EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000006884 (Gene tree)
Gene ID: 109520244
Gene Symbol: si:ch211-256m1.8
Alias: -
Full Name: uncharacterized LOC109520244
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 9737 bases
Position: chrKV880085.1:212406-222142
Accession: 109520244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000005241	tRNA-synt_2	PF00152.20	5.1e-28	1	1
ENSHCOP00000005250	tRNA-synt_2	PF00152.20	6.7e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000005697	-	4988	-	ENSHCOP00000005241	1350 (aa)	-	-
ENSHCOT00000005691	-	5411	XM_019877345	ENSHCOP00000005250	1577 (aa)	XP_019732904	UPI00094E51BB

Gene Model

Click here to download ENSHCOG00000006884's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq00250	Alanine, aspartate and glutamate metabolism	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000006884's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000006884	si:ch211-256m1.8	100	74.115	ENSAPOG00000007012	si:ch211-256m1.8	100	72.963	Acanthochromis_polyacanthus
ENSHCOG00000006884	si:ch211-256m1.8	100	74.189	ENSAOCG00000012258	si:ch211-256m1.8	100	73.152	Amphiprion_ocellaris
ENSHCOG00000006884	si:ch211-256m1.8	100	74.041	ENSAPEG00000002724	si:ch211-256m1.8	100	73.026	Amphiprion_percula
ENSHCOG00000006884	si:ch211-256m1.8	100	75.959	ENSATEG00000006278	si:ch211-256m1.8	100	74.668	Anabas_testudineus
ENSHCOG00000006884	si:ch211-256m1.8	100	74.446	ENSACLG00000011503	si:ch211-256m1.8	100	73.182	Astatotilapia_calliptera
ENSHCOG00000006884	si:ch211-256m1.8	100	65.764	ENSAMXG00000038245	si:ch211-256m1.8	100	64.765	Astyanax_mexicanus
ENSHCOG00000006884	si:ch211-256m1.8	99	71.956	ENSCSEG00000006255	si:ch211-256m1.8	100	70.518	Cynoglossus_semilaevis
ENSHCOG00000006884	si:ch211-256m1.8	100	71.302	ENSCVAG00000003376	si:ch211-256m1.8	100	71.058	Cyprinodon_variegatus
ENSHCOG00000006884	si:ch211-256m1.8	100	65.436	ENSDARG00000055172	si:ch211-256m1.8	100	63.021	Danio_rerio
ENSHCOG00000006884	si:ch211-256m1.8	100	68.268	ENSELUG00000010546	si:ch211-256m1.8	100	66.604	Esox_lucius
ENSHCOG00000006884	si:ch211-256m1.8	100	71.228	ENSFHEG00000005847	si:ch211-256m1.8	100	70.234	Fundulus_heteroclitus
ENSHCOG00000006884	si:ch211-256m1.8	100	71.524	ENSGAFG00000010269	si:ch211-256m1.8	100	71.311	Gambusia_affinis
ENSHCOG00000006884	si:ch211-256m1.8	100	74.372	ENSHBUG00000014407	si:ch211-256m1.8	100	73.118	Haplochromis_burtoni
ENSHCOG00000006884	si:ch211-256m1.8	100	65.710	ENSIPUG00000022659	si:ch211-256m1.8	100	64.083	Ictalurus_punctatus
ENSHCOG00000006884	si:ch211-256m1.8	100	71.727	ENSKMAG00000016377	si:ch211-256m1.8	100	71.727	Kryptolebias_marmoratus
ENSHCOG00000006884	si:ch211-256m1.8	99	74.668	ENSLBEG00000010639	si:ch211-256m1.8	100	73.594	Labrus_bergylta
ENSHCOG00000006884	si:ch211-256m1.8	100	60.499	ENSLOCG00000011127	si:ch211-256m1.8	100	58.621	Lepisosteus_oculatus
ENSHCOG00000006884	si:ch211-256m1.8	99	75.537	ENSMAMG00000005651	si:ch211-256m1.8	99	73.874	Mastacembelus_armatus
ENSHCOG00000006884	si:ch211-256m1.8	100	74.520	ENSMZEG00005006924	si:ch211-256m1.8	100	73.245	Maylandia_zebra
ENSHCOG00000006884	si:ch211-256m1.8	100	70.892	ENSMMOG00000001736	si:ch211-256m1.8	100	70.321	Mola_mola
ENSHCOG00000006884	si:ch211-256m1.8	100	74.520	ENSNBRG00000005143	si:ch211-256m1.8	100	72.992	Neolamprologus_brichardi
ENSHCOG00000006884	si:ch211-256m1.8	100	70.679	ENSORLG00000022248	si:ch211-256m1.8	100	70.019	Oryzias_latipes
ENSHCOG00000006884	si:ch211-256m1.8	100	70.310	ENSORLG00020000214	si:ch211-256m1.8	100	69.703	Oryzias_latipes_hni
ENSHCOG00000006884	si:ch211-256m1.8	100	70.436	ENSORLG00015020297	si:ch211-256m1.8	100	70.274	Oryzias_latipes_hsok
ENSHCOG00000006884	si:ch211-256m1.8	100	71.492	ENSOMEG00000004519	si:ch211-256m1.8	100	71.305	Oryzias_melastigma
ENSHCOG00000006884	si:ch211-256m1.8	95	66.311	ENSPKIG00000007399	si:ch211-256m1.8	99	66.311	Paramormyrops_kingsleyae
ENSHCOG00000006884	si:ch211-256m1.8	99	69.617	ENSPMGG00000007698	si:ch211-256m1.8	100	65.741	Periophthalmus_magnuspinnatus
ENSHCOG00000006884	si:ch211-256m1.8	100	72.485	ENSPFOG00000005178	si:ch211-256m1.8	100	72.198	Poecilia_formosa
ENSHCOG00000006884	si:ch211-256m1.8	100	72.337	ENSPLAG00000006872	si:ch211-256m1.8	100	72.071	Poecilia_latipinna
ENSHCOG00000006884	si:ch211-256m1.8	100	72.411	ENSPMEG00000021815	si:ch211-256m1.8	100	72.008	Poecilia_mexicana
ENSHCOG00000006884	si:ch211-256m1.8	100	72.189	ENSPREG00000018669	si:ch211-256m1.8	100	71.628	Poecilia_reticulata
ENSHCOG00000006884	si:ch211-256m1.8	100	74.298	ENSPNYG00000018038	si:ch211-256m1.8	100	73.055	Pundamilia_nyererei
ENSHCOG00000006884	si:ch211-256m1.8	100	65.934	ENSPNAG00000003552	si:ch211-256m1.8	99	64.362	Pygocentrus_nattereri
ENSHCOG00000006884	si:ch211-256m1.8	100	65.007	ENSPNAG00000018965	-	99	63.631	Pygocentrus_nattereri
ENSHCOG00000006884	si:ch211-256m1.8	100	65.735	ENSSFOG00015008344	si:ch211-256m1.8	100	63.980	Scleropages_formosus
ENSHCOG00000006884	si:ch211-256m1.8	99	75.480	ENSSMAG00000007562	si:ch211-256m1.8	100	74.100	Scophthalmus_maximus
ENSHCOG00000006884	si:ch211-256m1.8	100	77.515	ENSSDUG00000018180	si:ch211-256m1.8	100	76.694	Seriola_dumerili
ENSHCOG00000006884	si:ch211-256m1.8	100	77.367	ENSSLDG00000020310	si:ch211-256m1.8	100	76.314	Seriola_lalandi_dorsalis
ENSHCOG00000006884	si:ch211-256m1.8	100	73.565	ENSSPAG00000013419	si:ch211-256m1.8	100	73.565	Stegastes_partitus
ENSHCOG00000006884	si:ch211-256m1.8	100	67.576	ENSTRUG00000023803	si:ch211-256m1.8	100	66.414	Takifugu_rubripes
ENSHCOG00000006884	si:ch211-256m1.8	100	72.189	ENSXCOG00000017726	si:ch211-256m1.8	100	71.881	Xiphophorus_couchianus
ENSHCOG00000006884	si:ch211-256m1.8	100	72.115	ENSXMAG00000026576	si:ch211-256m1.8	100	71.881	Xiphophorus_maculatus