EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000007122 (Gene tree)
Gene ID: 109519600
Gene Symbol: smfn
Alias: zgc:73191
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 15249 bases
Position: chrKV880076.1:745984-761232
Accession: 109519600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000005444	RNase_T	PF00929.24	2.3e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000005362	-	537	XM_019876235	ENSHCOP00000005444	178 (aa)	XP_019731794	-

Gene Model

Click here to download ENSHCOG00000007122's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000007122's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000007122	smfn	93	79.518	ENSG00000076043	REXO2	93	77.841	Homo_sapiens
ENSHCOG00000007122	smfn	59	82.727	ENSAPOG00000011971	smfn	95	82.727	Acanthochromis_polyacanthus
ENSHCOG00000007122	smfn	93	79.518	ENSAMEG00000013263	REXO2	76	76.667	Ailuropoda_melanoleuca
ENSHCOG00000007122	smfn	98	81.006	ENSACIG00000023553	smfn	97	81.006	Amphilophus_citrinellus
ENSHCOG00000007122	smfn	69	81.250	ENSAOCG00000011565	smfn	78	81.250	Amphiprion_ocellaris
ENSHCOG00000007122	smfn	98	81.667	ENSAPEG00000012435	smfn	67	81.667	Amphiprion_percula
ENSHCOG00000007122	smfn	98	81.111	ENSATEG00000015385	smfn	65	81.111	Anabas_testudineus
ENSHCOG00000007122	smfn	98	75.556	ENSAPLG00000005045	REXO2	89	75.556	Anas_platyrhynchos
ENSHCOG00000007122	smfn	94	71.856	ENSACAG00000011631	REXO2	78	71.856	Anolis_carolinensis
ENSHCOG00000007122	smfn	93	80.120	ENSANAG00000020834	REXO2	76	77.222	Aotus_nancymaae
ENSHCOG00000007122	smfn	65	64.655	ENSANAG00000027457	-	93	60.606	Aotus_nancymaae
ENSHCOG00000007122	smfn	98	84.270	ENSACLG00000024566	smfn	94	84.270	Astatotilapia_calliptera
ENSHCOG00000007122	smfn	93	79.518	ENSBTAG00000005843	REXO2	76	76.667	Bos_taurus
ENSHCOG00000007122	smfn	93	46.988	WBGene00007429	C08B6.8	88	55.072	Caenorhabditis_elegans
ENSHCOG00000007122	smfn	93	78.916	ENSCJAG00000012434	REXO2	76	76.111	Callithrix_jacchus
ENSHCOG00000007122	smfn	93	78.313	ENSCAFG00000013511	REXO2	76	75.556	Canis_familiaris
ENSHCOG00000007122	smfn	93	79.518	ENSCAFG00020002513	REXO2	76	76.667	Canis_lupus_dingo
ENSHCOG00000007122	smfn	93	79.518	ENSCHIG00000009264	REXO2	76	76.667	Capra_hircus
ENSHCOG00000007122	smfn	93	80.120	ENSTSYG00000002237	REXO2	76	77.222	Carlito_syrichta
ENSHCOG00000007122	smfn	93	70.482	ENSTSYG00000027948	-	92	68.333	Carlito_syrichta
ENSHCOG00000007122	smfn	93	80.120	ENSCAPG00000006093	REXO2	96	77.222	Cavia_aperea
ENSHCOG00000007122	smfn	93	80.120	ENSCPOG00000010548	REXO2	76	77.222	Cavia_porcellus
ENSHCOG00000007122	smfn	93	79.518	ENSCCAG00000034979	REXO2	76	76.667	Cebus_capucinus
ENSHCOG00000007122	smfn	93	79.518	ENSCATG00000015278	REXO2	73	77.841	Cercocebus_atys
ENSHCOG00000007122	smfn	93	80.120	ENSCLAG00000011195	REXO2	76	77.222	Chinchilla_lanigera
ENSHCOG00000007122	smfn	93	79.518	ENSCSAG00000002754	REXO2	73	77.841	Chlorocebus_sabaeus
ENSHCOG00000007122	smfn	93	78.313	ENSCHOG00000000642	-	76	75.556	Choloepus_hoffmanni
ENSHCOG00000007122	smfn	51	79.121	ENSCHOG00000013497	REXO2	65	79.121	Choloepus_hoffmanni
ENSHCOG00000007122	smfn	74	73.723	ENSCPBG00000009359	REXO2	94	73.723	Chrysemys_picta_bellii
ENSHCOG00000007122	smfn	93	60.241	ENSCING00000009858	-	80	60.241	Ciona_intestinalis
ENSHCOG00000007122	smfn	93	79.518	ENSCANG00000034756	REXO2	73	77.841	Colobus_angolensis_palliatus
ENSHCOG00000007122	smfn	93	77.711	ENSCGRG00001013673	-	88	75.556	Cricetulus_griseus_chok1gshd
ENSHCOG00000007122	smfn	93	76.506	ENSCGRG00001010922	-	88	73.889	Cricetulus_griseus_chok1gshd
ENSHCOG00000007122	smfn	93	79.518	ENSCGRG00001019814	-	76	76.667	Cricetulus_griseus_chok1gshd
ENSHCOG00000007122	smfn	93	79.518	ENSCGRG00000006235	Rexo2	76	76.667	Cricetulus_griseus_crigri
ENSHCOG00000007122	smfn	98	76.667	ENSCSEG00000007214	smfn	65	76.667	Cynoglossus_semilaevis
ENSHCOG00000007122	smfn	94	80.357	ENSCVAG00000012008	smfn	91	80.357	Cyprinodon_variegatus
ENSHCOG00000007122	smfn	98	76.271	ENSDARG00000009806	smfn	68	76.271	Danio_rerio
ENSHCOG00000007122	smfn	90	80.625	ENSDNOG00000046533	REXO2	77	80.625	Dasypus_novemcinctus
ENSHCOG00000007122	smfn	93	62.048	ENSDORG00000025142	-	78	60.221	Dipodomys_ordii
ENSHCOG00000007122	smfn	93	80.120	ENSDORG00000011255	Rexo2	76	77.222	Dipodomys_ordii
ENSHCOG00000007122	smfn	94	51.497	FBgn0039115	CG10214	79	51.497	Drosophila_melanogaster
ENSHCOG00000007122	smfn	98	70.857	ENSEBUG00000013964	REXO2	60	70.857	Eptatretus_burgeri
ENSHCOG00000007122	smfn	93	79.518	ENSEASG00005006674	REXO2	76	76.667	Equus_asinus_asinus
ENSHCOG00000007122	smfn	93	79.518	ENSECAG00000005988	REXO2	76	76.667	Equus_caballus
ENSHCOG00000007122	smfn	94	80.240	ENSELUG00000020072	smfn	58	80.240	Esox_lucius
ENSHCOG00000007122	smfn	93	79.518	ENSFCAG00000018632	REXO2	76	76.667	Felis_catus
ENSHCOG00000007122	smfn	98	76.111	ENSFALG00000010044	REXO2	89	76.111	Ficedula_albicollis
ENSHCOG00000007122	smfn	93	80.120	ENSFDAG00000011764	REXO2	76	77.222	Fukomys_damarensis
ENSHCOG00000007122	smfn	94	79.042	ENSGMOG00000006370	smfn	87	79.042	Gadus_morhua
ENSHCOG00000007122	smfn	98	76.667	ENSGALG00000035980	REXO2	77	76.667	Gallus_gallus
ENSHCOG00000007122	smfn	98	77.778	ENSGAFG00000015349	smfn	64	77.778	Gambusia_affinis
ENSHCOG00000007122	smfn	94	82.738	ENSGACG00000020096	smfn	83	82.738	Gasterosteus_aculeatus
ENSHCOG00000007122	smfn	94	78.443	ENSGAGG00000021126	REXO2	73	78.443	Gopherus_agassizii
ENSHCOG00000007122	smfn	93	79.518	ENSGGOG00000023267	REXO2	73	77.841	Gorilla_gorilla
ENSHCOG00000007122	smfn	68	87.903	ENSHBUG00000020097	REXO2	61	87.903	Haplochromis_burtoni
ENSHCOG00000007122	smfn	93	79.518	ENSHGLG00000013556	REXO2	76	76.667	Heterocephalus_glaber_female
ENSHCOG00000007122	smfn	93	80.120	ENSHGLG00100005257	REXO2	76	77.222	Heterocephalus_glaber_male
ENSHCOG00000007122	smfn	98	77.778	ENSIPUG00000020440	rexo2	66	77.778	Ictalurus_punctatus
ENSHCOG00000007122	smfn	93	80.120	ENSSTOG00000012465	REXO2	76	77.222	Ictidomys_tridecemlineatus
ENSHCOG00000007122	smfn	93	80.120	ENSJJAG00000013710	-	76	77.222	Jaculus_jaculus
ENSHCOG00000007122	smfn	99	53.107	ENSJJAG00000022605	-	68	53.107	Jaculus_jaculus
ENSHCOG00000007122	smfn	94	83.234	ENSKMAG00000016795	smfn	59	83.234	Kryptolebias_marmoratus
ENSHCOG00000007122	smfn	100	76.966	ENSLBEG00000006021	smfn	94	76.966	Labrus_bergylta
ENSHCOG00000007122	smfn	98	67.778	ENSLACG00000018623	REXO2	74	67.778	Latimeria_chalumnae
ENSHCOG00000007122	smfn	98	78.333	ENSLOCG00000002389	smfn	86	78.333	Lepisosteus_oculatus
ENSHCOG00000007122	smfn	93	79.518	ENSLAFG00000012451	REXO2	76	76.667	Loxodonta_africana
ENSHCOG00000007122	smfn	93	79.518	ENSMFAG00000041155	REXO2	73	77.841	Macaca_fascicularis
ENSHCOG00000007122	smfn	93	79.518	ENSMMUG00000012269	REXO2	73	77.841	Macaca_mulatta
ENSHCOG00000007122	smfn	93	79.518	ENSMNEG00000033379	REXO2	73	77.841	Macaca_nemestrina
ENSHCOG00000007122	smfn	93	79.518	ENSMLEG00000036571	REXO2	73	77.841	Mandrillus_leucophaeus
ENSHCOG00000007122	smfn	98	84.358	ENSMAMG00000021209	smfn	65	84.358	Mastacembelus_armatus
ENSHCOG00000007122	smfn	98	84.270	ENSMZEG00005020730	REXO2	69	84.270	Maylandia_zebra
ENSHCOG00000007122	smfn	98	84.270	ENSMZEG00005023224	-	69	84.270	Maylandia_zebra
ENSHCOG00000007122	smfn	79	78.873	ENSMGAG00000003026	REXO2	87	78.873	Meleagris_gallopavo
ENSHCOG00000007122	smfn	93	79.518	ENSMAUG00000014576	Rexo2	76	76.667	Mesocricetus_auratus
ENSHCOG00000007122	smfn	93	80.120	ENSMICG00000010094	REXO2	76	77.222	Microcebus_murinus
ENSHCOG00000007122	smfn	98	76.667	ENSMOCG00000009016	Rexo2	76	76.667	Microtus_ochrogaster
ENSHCOG00000007122	smfn	96	80.117	ENSMMOG00000006430	smfn	64	80.117	Mola_mola
ENSHCOG00000007122	smfn	98	77.778	ENSMODG00000013913	REXO2	76	77.778	Monodelphis_domestica
ENSHCOG00000007122	smfn	98	78.333	ENSMALG00000018130	smfn	51	78.333	Monopterus_albus
ENSHCOG00000007122	smfn	93	78.313	MGP_CAROLIEiJ_G0032166	Rexo2	76	75.556	Mus_caroli
ENSHCOG00000007122	smfn	93	78.313	ENSMUSG00000032026	Rexo2	77	74.863	Mus_musculus
ENSHCOG00000007122	smfn	93	78.313	MGP_PahariEiJ_G0015034	Rexo2	77	74.863	Mus_pahari
ENSHCOG00000007122	smfn	93	78.313	MGP_SPRETEiJ_G0033305	Rexo2	77	74.863	Mus_spretus
ENSHCOG00000007122	smfn	93	79.518	ENSMPUG00000003947	REXO2	76	76.667	Mustela_putorius_furo
ENSHCOG00000007122	smfn	93	78.916	ENSMLUG00000009030	REXO2	76	76.111	Myotis_lucifugus
ENSHCOG00000007122	smfn	93	80.723	ENSNGAG00000008819	Rexo2	88	77.778	Nannospalax_galili
ENSHCOG00000007122	smfn	98	82.584	ENSNBRG00000006529	smfn	95	82.584	Neolamprologus_brichardi
ENSHCOG00000007122	smfn	93	79.518	ENSNLEG00000029745	REXO2	73	77.841	Nomascus_leucogenys
ENSHCOG00000007122	smfn	98	77.222	ENSMEUG00000011558	REXO2	83	77.222	Notamacropus_eugenii
ENSHCOG00000007122	smfn	63	80.357	ENSOPRG00000011076	REXO2	53	76.190	Ochotona_princeps
ENSHCOG00000007122	smfn	93	80.120	ENSODEG00000009750	-	96	77.222	Octodon_degus
ENSHCOG00000007122	smfn	90	63.975	ENSODEG00000016046	-	79	63.975	Octodon_degus
ENSHCOG00000007122	smfn	98	84.270	ENSONIG00000001954	smfn	77	84.270	Oreochromis_niloticus
ENSHCOG00000007122	smfn	93	78.916	ENSOANG00000001754	REXO2	76	76.111	Ornithorhynchus_anatinus
ENSHCOG00000007122	smfn	93	80.120	ENSOCUG00000004274	REXO2	72	77.222	Oryctolagus_cuniculus
ENSHCOG00000007122	smfn	98	78.333	ENSORLG00000005119	smfn	58	78.333	Oryzias_latipes
ENSHCOG00000007122	smfn	98	78.333	ENSORLG00020010121	smfn	58	78.333	Oryzias_latipes_hni
ENSHCOG00000007122	smfn	98	78.333	ENSORLG00015015699	smfn	58	78.333	Oryzias_latipes_hsok
ENSHCOG00000007122	smfn	72	79.688	ENSOMEG00000008940	-	90	79.688	Oryzias_melastigma
ENSHCOG00000007122	smfn	96	78.363	ENSOMEG00000016878	REXO2	63	78.363	Oryzias_melastigma
ENSHCOG00000007122	smfn	93	80.120	ENSOGAG00000016860	REXO2	76	77.222	Otolemur_garnettii
ENSHCOG00000007122	smfn	93	79.518	ENSOARG00000001040	REXO2	85	76.667	Ovis_aries
ENSHCOG00000007122	smfn	93	79.518	ENSPPAG00000039849	REXO2	73	77.841	Pan_paniscus
ENSHCOG00000007122	smfn	93	79.518	ENSPPRG00000007255	REXO2	76	76.667	Panthera_pardus
ENSHCOG00000007122	smfn	93	79.518	ENSPTIG00000015578	REXO2	96	76.667	Panthera_tigris_altaica
ENSHCOG00000007122	smfn	93	79.518	ENSPTRG00000004306	REXO2	73	77.841	Pan_troglodytes
ENSHCOG00000007122	smfn	93	79.518	ENSPANG00000010675	REXO2	73	77.841	Papio_anubis
ENSHCOG00000007122	smfn	98	79.444	ENSPKIG00000000911	smfn	77	83.108	Paramormyrops_kingsleyae
ENSHCOG00000007122	smfn	98	75.556	ENSPSIG00000005151	REXO2	65	75.556	Pelodiscus_sinensis
ENSHCOG00000007122	smfn	98	77.778	ENSPMGG00000007442	smfn	96	77.778	Periophthalmus_magnuspinnatus
ENSHCOG00000007122	smfn	78	73.381	ENSPEMG00000001421	Rexo2	71	68.627	Peromyscus_maniculatus_bairdii
ENSHCOG00000007122	smfn	64	77.193	ENSPMAG00000001022	REXO2	98	77.193	Petromyzon_marinus
ENSHCOG00000007122	smfn	98	78.333	ENSPFOG00000017861	smfn	89	78.333	Poecilia_formosa
ENSHCOG00000007122	smfn	92	74.847	ENSPLAG00000007327	REXO2	62	74.847	Poecilia_latipinna
ENSHCOG00000007122	smfn	98	78.333	ENSPMEG00000017343	smfn	64	78.333	Poecilia_mexicana
ENSHCOG00000007122	smfn	98	77.778	ENSPREG00000016438	smfn	64	77.778	Poecilia_reticulata
ENSHCOG00000007122	smfn	93	79.518	ENSPPYG00000003895	REXO2	73	77.841	Pongo_abelii
ENSHCOG00000007122	smfn	93	78.916	ENSPCAG00000005237	REXO2	76	76.111	Procavia_capensis
ENSHCOG00000007122	smfn	82	80.822	ENSPCOG00000027639	REXO2	75	80.822	Propithecus_coquereli
ENSHCOG00000007122	smfn	78	78.986	ENSPVAG00000005295	REXO2	64	75.658	Pteropus_vampyrus
ENSHCOG00000007122	smfn	98	83.708	ENSPNYG00000018401	smfn	69	83.708	Pundamilia_nyererei
ENSHCOG00000007122	smfn	98	77.222	ENSPNAG00000005290	smfn	66	77.222	Pygocentrus_nattereri
ENSHCOG00000007122	smfn	93	78.313	ENSRNOG00000018939	Rexo2	76	75.556	Rattus_norvegicus
ENSHCOG00000007122	smfn	93	79.518	ENSRBIG00000037809	REXO2	73	77.841	Rhinopithecus_bieti
ENSHCOG00000007122	smfn	93	79.518	ENSRROG00000038928	REXO2	73	77.841	Rhinopithecus_roxellana
ENSHCOG00000007122	smfn	94	43.429	YLR059C	REX2	65	43.429	Saccharomyces_cerevisiae
ENSHCOG00000007122	smfn	93	80.120	ENSSBOG00000028651	REXO2	76	77.222	Saimiri_boliviensis_boliviensis
ENSHCOG00000007122	smfn	98	77.778	ENSSHAG00000008008	REXO2	77	77.778	Sarcophilus_harrisii
ENSHCOG00000007122	smfn	98	75.556	ENSSFOG00015022414	smfn	96	75.556	Scleropages_formosus
ENSHCOG00000007122	smfn	98	79.444	ENSSMAG00000003168	smfn	65	79.444	Scophthalmus_maximus
ENSHCOG00000007122	smfn	98	82.778	ENSSDUG00000015624	smfn	63	82.778	Seriola_dumerili
ENSHCOG00000007122	smfn	98	82.222	ENSSLDG00000014005	smfn	63	82.222	Seriola_lalandi_dorsalis
ENSHCOG00000007122	smfn	71	81.890	ENSSARG00000014530	REXO2	100	81.890	Sorex_araneus
ENSHCOG00000007122	smfn	83	71.053	ENSSPUG00000006005	REXO2	82	71.053	Sphenodon_punctatus
ENSHCOG00000007122	smfn	98	81.667	ENSSPAG00000001530	smfn	97	81.667	Stegastes_partitus
ENSHCOG00000007122	smfn	93	79.518	ENSSSCG00000015056	REXO2	76	76.667	Sus_scrofa
ENSHCOG00000007122	smfn	98	75.556	ENSTGUG00000000121	REXO2	77	75.556	Taeniopygia_guttata
ENSHCOG00000007122	smfn	98	79.661	ENSTRUG00000021529	smfn	66	79.661	Takifugu_rubripes
ENSHCOG00000007122	smfn	98	80.556	ENSTNIG00000008588	smfn	80	80.556	Tetraodon_nigroviridis
ENSHCOG00000007122	smfn	93	80.120	ENSTBEG00000017040	REXO2	76	77.222	Tupaia_belangeri
ENSHCOG00000007122	smfn	93	78.916	ENSTTRG00000014928	REXO2	76	76.111	Tursiops_truncatus
ENSHCOG00000007122	smfn	93	71.429	ENSUAMG00000019096	REXO2	75	80.137	Ursus_americanus
ENSHCOG00000007122	smfn	93	79.518	ENSUMAG00000003770	REXO2	76	76.667	Ursus_maritimus
ENSHCOG00000007122	smfn	93	59.036	ENSVPAG00000006301	REXO2	95	57.627	Vicugna_pacos
ENSHCOG00000007122	smfn	93	79.518	ENSVVUG00000025223	REXO2	76	76.667	Vulpes_vulpes
ENSHCOG00000007122	smfn	98	76.667	ENSXETG00000012648	rexo2	74	76.243	Xenopus_tropicalis
ENSHCOG00000007122	smfn	99	77.966	ENSXCOG00000018838	smfn	90	77.966	Xiphophorus_couchianus
ENSHCOG00000007122	smfn	99	77.401	ENSXMAG00000021125	smfn	57	77.401	Xiphophorus_maculatus