EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000007251 (Gene tree)
Gene ID
109531721
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Minus strand
Length
7574 bases
Position
chrKV880447.1:375001-382574
Accession
109531721
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000020823CPSF73-100_CPF11718.88.7e-5411
ENSHCOP00000020823Beta-CaspPF10996.89.5e-3411
ENSHCOP00000020823Lactamase_BPF00753.274.8e-1811
ENSHCOP00000020823RMMBLPF07521.121.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000005201-4789XM_019896171ENSHCOP00000020823686 (aa)XP_019751730UPI00094F2F7D
Gene Model
Click here to download ENSHCOG00000007251's gene model file
Pathways
Pathway IDPathway NameSource
hcq03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000007251's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000007251cpsf36539.427ENSHCOG00000013135ints117439.427
ENSHCOG00000007251cpsf310085.652ENSHCOG00000015957CPSF39985.652
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000007251cpsf39984.897ENSG00000119203CPSF310098.529Homo_sapiens
ENSHCOG00000007251cpsf39992.251ENSAPOG00000022087cpsf39992.251Acanthochromis_polyacanthus
ENSHCOG00000007251cpsf37496.457ENSAPOG00000012241CPSF39196.457Acanthochromis_polyacanthus
ENSHCOG00000007251cpsf39985.044ENSAMEG00000008493CPSF39985.044Ailuropoda_melanoleuca
ENSHCOG00000007251cpsf39188.141ENSACIG00000009846cpsf39981.606Amphilophus_citrinellus
ENSHCOG00000007251cpsf39184.762ENSACIG00000023663CPSF39978.986Amphilophus_citrinellus
ENSHCOG00000007251cpsf39987.083ENSAOCG00000010077CPSF39987.083Amphiprion_ocellaris
ENSHCOG00000007251cpsf39992.251ENSAOCG00000022056cpsf39992.765Amphiprion_ocellaris
ENSHCOG00000007251cpsf39992.398ENSAPEG00000019526cpsf39993.151Amphiprion_percula
ENSHCOG00000007251cpsf39987.083ENSAPEG00000021167CPSF39987.083Amphiprion_percula
ENSHCOG00000007251cpsf39991.667ENSATEG00000003959cpsf39991.667Anabas_testudineus
ENSHCOG00000007251cpsf39983.599ENSATEG00000014525CPSF39983.599Anabas_testudineus
ENSHCOG00000007251cpsf39784.799ENSAPLG00000006941CPSF39884.799Anas_platyrhynchos
ENSHCOG00000007251cpsf39282.677ENSACAG00000001759CPSF39982.677Anolis_carolinensis
ENSHCOG00000007251cpsf39979.765ENSANAG00000031254CPSF39980.210Aotus_nancymaae
ENSHCOG00000007251cpsf39184.762ENSACLG00000018846CPSF39978.841Astatotilapia_calliptera
ENSHCOG00000007251cpsf39692.273ENSACLG00000014484cpsf39992.273Astatotilapia_calliptera
ENSHCOG00000007251cpsf39986.792ENSAMXG00000004786cpsf39986.792Astyanax_mexicanus
ENSHCOG00000007251cpsf39985.044ENSBTAG00000019735CPSF39985.044Bos_taurus
ENSHCOG00000007251cpsf39058.044WBGene00013460cpsf-38958.044Caenorhabditis_elegans
ENSHCOG00000007251cpsf39984.751ENSCJAG00000006276CPSF39984.751Callithrix_jacchus
ENSHCOG00000007251cpsf39984.470ENSCAFG00000003375CPSF39684.470Canis_familiaris
ENSHCOG00000007251cpsf39088.350ENSCAFG00020026799CPSF39988.350Canis_lupus_dingo
ENSHCOG00000007251cpsf39985.044ENSCHIG00000013973CPSF39985.044Capra_hircus
ENSHCOG00000007251cpsf39984.897ENSTSYG00000002967CPSF39984.897Carlito_syrichta
ENSHCOG00000007251cpsf39685.435ENSCAPG00000013851CPSF39985.435Cavia_aperea
ENSHCOG00000007251cpsf39985.484ENSCPOG00000011299CPSF39985.484Cavia_porcellus
ENSHCOG00000007251cpsf39984.751ENSCCAG00000036730CPSF39984.751Cebus_capucinus
ENSHCOG00000007251cpsf39982.845ENSCATG00000014770CPSF39991.207Cercocebus_atys
ENSHCOG00000007251cpsf39985.484ENSCLAG00000002727CPSF39985.484Chinchilla_lanigera
ENSHCOG00000007251cpsf39976.979ENSCSAG00000007125CPSF39976.979Chlorocebus_sabaeus
ENSHCOG00000007251cpsf385100.000ENSCHOG00000000180CPSF38560.984Choloepus_hoffmanni
ENSHCOG00000007251cpsf39984.783ENSCPBG00000014074CPSF39984.783Chrysemys_picta_bellii
ENSHCOG00000007251cpsf39868.182ENSCING00000007214-9868.182Ciona_intestinalis
ENSHCOG00000007251cpsf39974.964ENSCANG00000034435CPSF39974.964Colobus_angolensis_palliatus
ENSHCOG00000007251cpsf39984.604ENSCGRG00001013134Cpsf39984.604Cricetulus_griseus_chok1gshd
ENSHCOG00000007251cpsf39984.604ENSCGRG00000018319Cpsf39984.604Cricetulus_griseus_crigri
ENSHCOG00000007251cpsf39986.232ENSCSEG00000002021CPSF39986.232Cynoglossus_semilaevis
ENSHCOG00000007251cpsf39986.938ENSCVAG00000015067CPSF39986.938Cyprinodon_variegatus
ENSHCOG00000007251cpsf39986.357ENSDARG00000027649cpsf39986.357Danio_rerio
ENSHCOG00000007251cpsf39983.895ENSDNOG00000008940CPSF39583.895Dasypus_novemcinctus
ENSHCOG00000007251cpsf39586.769ENSDORG00000014263Cpsf39986.769Dipodomys_ordii
ENSHCOG00000007251cpsf39866.962FBgn0261065Cpsf739966.962Drosophila_melanogaster
ENSHCOG00000007251cpsf39574.154ENSETEG00000003893CPSF39974.154Echinops_telfairi
ENSHCOG00000007251cpsf310074.648ENSEBUG00000009018cpsf39974.648Eptatretus_burgeri
ENSHCOG00000007251cpsf39985.044ENSEASG00005003970CPSF39985.044Equus_asinus_asinus
ENSHCOG00000007251cpsf39985.044ENSECAG00000019911CPSF39690.909Equus_caballus
ENSHCOG00000007251cpsf39970.088ENSEEUG00000015422CPSF39970.088Erinaceus_europaeus
ENSHCOG00000007251cpsf39989.099ENSELUG00000013775cpsf39989.099Esox_lucius
ENSHCOG00000007251cpsf39985.044ENSFCAG00000007852CPSF39985.044Felis_catus
ENSHCOG00000007251cpsf39384.520ENSFALG00000006572CPSF39984.520Ficedula_albicollis
ENSHCOG00000007251cpsf39984.773ENSFDAG00000006317CPSF39984.773Fukomys_damarensis
ENSHCOG00000007251cpsf39991.082ENSFHEG00000014774cpsf39991.082Fundulus_heteroclitus
ENSHCOG00000007251cpsf35866.993ENSFHEG00000012186CPSF39966.993Fundulus_heteroclitus
ENSHCOG00000007251cpsf39988.808ENSGMOG00000003157cpsf39988.808Gadus_morhua
ENSHCOG00000007251cpsf39985.174ENSGALG00000016424CPSF39985.174Gallus_gallus
ENSHCOG00000007251cpsf39987.791ENSGAFG00000008016CPSF39987.791Gambusia_affinis
ENSHCOG00000007251cpsf39189.423ENSGAFG00000019449cpsf39982.920Gambusia_affinis
ENSHCOG00000007251cpsf36879.744ENSGAGG00000025583CPSF39379.744Gopherus_agassizii
ENSHCOG00000007251cpsf39982.783ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSHCOG00000007251cpsf39991.959ENSHBUG00000001188cpsf39991.959Haplochromis_burtoni
ENSHCOG00000007251cpsf35877.723ENSHBUG00000014332CPSF39977.723Haplochromis_burtoni
ENSHCOG00000007251cpsf39984.875ENSHGLG00000000666CPSF39984.875Heterocephalus_glaber_female
ENSHCOG00000007251cpsf39984.875ENSHGLG00100007765CPSF39984.875Heterocephalus_glaber_male
ENSHCOG00000007251cpsf39986.502ENSIPUG00000023488cpsf39986.502Ictalurus_punctatus
ENSHCOG00000007251cpsf39984.604ENSSTOG00000004476CPSF39984.604Ictidomys_tridecemlineatus
ENSHCOG00000007251cpsf39984.018ENSJJAG00000023415Cpsf39984.018Jaculus_jaculus
ENSHCOG00000007251cpsf39986.357ENSKMAG00000007317CPSF39986.357Kryptolebias_marmoratus
ENSHCOG00000007251cpsf39991.959ENSKMAG00000002806cpsf39991.959Kryptolebias_marmoratus
ENSHCOG00000007251cpsf35486.559ENSLBEG00000015018-9986.559Labrus_bergylta
ENSHCOG00000007251cpsf39984.380ENSLBEG00000020569cpsf39684.380Labrus_bergylta
ENSHCOG00000007251cpsf39688.128ENSLBEG00000013492CPSF39988.128Labrus_bergylta
ENSHCOG00000007251cpsf39979.536ENSLACG00000008308CPSF39979.536Latimeria_chalumnae
ENSHCOG00000007251cpsf39986.831ENSLOCG00000016823cpsf39986.831Lepisosteus_oculatus
ENSHCOG00000007251cpsf39883.652ENSLAFG00000009467CPSF39983.652Loxodonta_africana
ENSHCOG00000007251cpsf39984.751ENSMFAG00000001339CPSF39593.568Macaca_fascicularis
ENSHCOG00000007251cpsf38790.909ENSMMUG00000018038CPSF39293.568Macaca_mulatta
ENSHCOG00000007251cpsf39096.429ENSMNEG00000039447CPSF39996.429Macaca_nemestrina
ENSHCOG00000007251cpsf39984.897ENSMLEG00000026825CPSF39396.154Mandrillus_leucophaeus
ENSHCOG00000007251cpsf39184.311ENSMAMG00000008835CPSF39978.582Mastacembelus_armatus
ENSHCOG00000007251cpsf39990.351ENSMAMG00000003076cpsf39990.351Mastacembelus_armatus
ENSHCOG00000007251cpsf39987.083ENSMZEG00005006258CPSF39987.083Maylandia_zebra
ENSHCOG00000007251cpsf39991.959ENSMZEG00005014358cpsf39991.959Maylandia_zebra
ENSHCOG00000007251cpsf39685.285ENSMGAG00000013995CPSF39985.285Meleagris_gallopavo
ENSHCOG00000007251cpsf35474.400ENSMAUG00000000166Cpsf39974.400Mesocricetus_auratus
ENSHCOG00000007251cpsf39980.117ENSMICG00000002363CPSF39980.117Microcebus_murinus
ENSHCOG00000007251cpsf39982.448ENSMOCG00000020067Cpsf39982.448Microtus_ochrogaster
ENSHCOG00000007251cpsf38070.238ENSMMOG00000011923CPSF38476.786Mola_mola
ENSHCOG00000007251cpsf39384.844ENSMMOG00000018212CPSF39884.844Mola_mola
ENSHCOG00000007251cpsf39983.454ENSMODG00000014703CPSF39983.454Monodelphis_domestica
ENSHCOG00000007251cpsf39283.019ENSMALG00000011474CPSF39983.019Monopterus_albus
ENSHCOG00000007251cpsf39991.667ENSMALG00000016416cpsf39991.667Monopterus_albus
ENSHCOG00000007251cpsf39984.897MGP_CAROLIEiJ_G0017640Cpsf39984.897Mus_caroli
ENSHCOG00000007251cpsf39984.897ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSHCOG00000007251cpsf39984.751MGP_PahariEiJ_G0029397Cpsf39984.751Mus_pahari
ENSHCOG00000007251cpsf39984.897MGP_SPRETEiJ_G0018481Cpsf39984.897Mus_spretus
ENSHCOG00000007251cpsf39985.022ENSMPUG00000013213CPSF39985.022Mustela_putorius_furo
ENSHCOG00000007251cpsf39984.919ENSMLUG00000010636CPSF39984.919Myotis_lucifugus
ENSHCOG00000007251cpsf39984.457ENSNGAG00000019836Cpsf39984.457Nannospalax_galili
ENSHCOG00000007251cpsf39184.762ENSNBRG00000010525CPSF39978.841Neolamprologus_brichardi
ENSHCOG00000007251cpsf39991.813ENSNBRG00000004770cpsf39991.813Neolamprologus_brichardi
ENSHCOG00000007251cpsf39984.751ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSHCOG00000007251cpsf39954.692ENSMEUG00000013117-9954.692Notamacropus_eugenii
ENSHCOG00000007251cpsf39976.505ENSOPRG00000008902CPSF39976.505Ochotona_princeps
ENSHCOG00000007251cpsf39985.630ENSODEG00000003129CPSF39985.630Octodon_degus
ENSHCOG00000007251cpsf39992.251ENSONIG00000018812cpsf39992.251Oreochromis_niloticus
ENSHCOG00000007251cpsf38182.416ENSOANG00000008577CPSF39982.416Ornithorhynchus_anatinus
ENSHCOG00000007251cpsf39985.044ENSOCUG00000003728CPSF39985.044Oryctolagus_cuniculus
ENSHCOG00000007251cpsf39991.520ENSORLG00000018854cpsf39991.520Oryzias_latipes
ENSHCOG00000007251cpsf39991.667ENSORLG00020013331cpsf39991.667Oryzias_latipes_hni
ENSHCOG00000007251cpsf39991.520ENSORLG00015011017cpsf39991.520Oryzias_latipes_hsok
ENSHCOG00000007251cpsf39991.082ENSOMEG00000010647cpsf39591.082Oryzias_melastigma
ENSHCOG00000007251cpsf39975.073ENSOGAG00000001680CPSF39975.073Otolemur_garnettii
ENSHCOG00000007251cpsf39985.044ENSOARG00000015073CPSF39985.044Ovis_aries
ENSHCOG00000007251cpsf39984.897ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSHCOG00000007251cpsf39984.897ENSPPRG00000016790CPSF39985.044Panthera_pardus
ENSHCOG00000007251cpsf39885.125ENSPTIG00000003920CPSF39985.272Panthera_tigris_altaica
ENSHCOG00000007251cpsf39984.897ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSHCOG00000007251cpsf39984.751ENSPANG00000016798CPSF39593.568Papio_anubis
ENSHCOG00000007251cpsf39987.064ENSPKIG00000023646cpsf39987.064Paramormyrops_kingsleyae
ENSHCOG00000007251cpsf39984.164ENSPSIG00000016144CPSF39984.164Pelodiscus_sinensis
ENSHCOG00000007251cpsf35879.950ENSPMGG00000015311CPSF39979.950Periophthalmus_magnuspinnatus
ENSHCOG00000007251cpsf38289.594ENSPMGG00000006141-9983.814Periophthalmus_magnuspinnatus
ENSHCOG00000007251cpsf39984.457ENSPEMG00000017668Cpsf39984.604Peromyscus_maniculatus_bairdii
ENSHCOG00000007251cpsf37987.706ENSPMAG00000004841cpsf310087.706Petromyzon_marinus
ENSHCOG00000007251cpsf39684.084ENSPCIG00000009823CPSF39884.816Phascolarctos_cinereus
ENSHCOG00000007251cpsf39991.387ENSPFOG00000015922cpsf39991.387Poecilia_formosa
ENSHCOG00000007251cpsf39987.355ENSPFOG00000010418-9987.355Poecilia_formosa
ENSHCOG00000007251cpsf39991.387ENSPLAG00000000882cpsf39991.387Poecilia_latipinna
ENSHCOG00000007251cpsf35880.893ENSPLAG00000021300-9980.893Poecilia_latipinna
ENSHCOG00000007251cpsf39991.533ENSPMEG00000018309cpsf39991.533Poecilia_mexicana
ENSHCOG00000007251cpsf39981.686ENSPREG00000004482CPSF39981.686Poecilia_reticulata
ENSHCOG00000007251cpsf39189.263ENSPREG00000014875cpsf39982.774Poecilia_reticulata
ENSHCOG00000007251cpsf39980.645ENSPPYG00000012666CPSF39980.645Pongo_abelii
ENSHCOG00000007251cpsf38564.353ENSPCAG00000015042CPSF38964.353Procavia_capensis
ENSHCOG00000007251cpsf38885.911ENSPCOG00000023016CPSF39985.911Propithecus_coquereli
ENSHCOG00000007251cpsf39984.875ENSPVAG00000005324CPSF39984.875Pteropus_vampyrus
ENSHCOG00000007251cpsf39991.959ENSPNYG00000004405cpsf39991.959Pundamilia_nyererei
ENSHCOG00000007251cpsf37990.590ENSPNYG00000021047CPSF39183.223Pundamilia_nyererei
ENSHCOG00000007251cpsf39986.647ENSPNAG00000023060cpsf39986.647Pygocentrus_nattereri
ENSHCOG00000007251cpsf39984.875ENSRNOG00000052418Cpsf39984.875Rattus_norvegicus
ENSHCOG00000007251cpsf39979.912ENSRBIG00000041615CPSF39980.805Rhinopithecus_bieti
ENSHCOG00000007251cpsf39984.897ENSRROG00000033792CPSF39984.897Rhinopithecus_roxellana
ENSHCOG00000007251cpsf38542.576YLR277CYSH18542.576Saccharomyces_cerevisiae
ENSHCOG00000007251cpsf39681.381ENSSBOG00000027263CPSF39781.381Saimiri_boliviensis_boliviensis
ENSHCOG00000007251cpsf39984.457ENSSHAG00000007024CPSF39984.457Sarcophilus_harrisii
ENSHCOG00000007251cpsf39987.209ENSSFOG00015002108cpsf39987.209Scleropages_formosus
ENSHCOG00000007251cpsf39687.823ENSSMAG00000020534CPSF39787.823Scophthalmus_maximus
ENSHCOG00000007251cpsf39991.813ENSSDUG00000002828cpsf39791.813Seriola_dumerili
ENSHCOG00000007251cpsf39987.083ENSSDUG00000018498CPSF39987.083Seriola_dumerili
ENSHCOG00000007251cpsf39987.083ENSSLDG00000005234CPSF39987.083Seriola_lalandi_dorsalis
ENSHCOG00000007251cpsf39991.667ENSSLDG00000008469cpsf39791.667Seriola_lalandi_dorsalis
ENSHCOG00000007251cpsf38982.552ENSSARG00000005186CPSF39082.552Sorex_araneus
ENSHCOG00000007251cpsf39683.731ENSSPUG00000015525CPSF39783.731Sphenodon_punctatus
ENSHCOG00000007251cpsf39991.959ENSSPAG00000018579cpsf39991.959Stegastes_partitus
ENSHCOG00000007251cpsf39986.502ENSSPAG00000002906CPSF39986.502Stegastes_partitus
ENSHCOG00000007251cpsf39985.044ENSSSCG00000020799CPSF39985.044Sus_scrofa
ENSHCOG00000007251cpsf39985.066ENSTGUG00000013016CPSF39985.066Taeniopygia_guttata
ENSHCOG00000007251cpsf35871.287ENSTRUG00000013905CPSF39971.287Takifugu_rubripes
ENSHCOG00000007251cpsf39991.813ENSTRUG00000007030cpsf39891.813Takifugu_rubripes
ENSHCOG00000007251cpsf38490.110ENSTBEG00000002707CPSF38490.110Tupaia_belangeri
ENSHCOG00000007251cpsf38673.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSHCOG00000007251cpsf39685.498ENSUAMG00000007535CPSF39585.498Ursus_americanus
ENSHCOG00000007251cpsf39384.520ENSUMAG00000003676CPSF39490.681Ursus_maritimus
ENSHCOG00000007251cpsf39285.804ENSVPAG00000008041CPSF310085.804Vicugna_pacos
ENSHCOG00000007251cpsf39985.044ENSVVUG00000002194CPSF39985.044Vulpes_vulpes
ENSHCOG00000007251cpsf310083.792ENSXETG00000008263cpsf39983.792Xenopus_tropicalis
ENSHCOG00000007251cpsf39991.095ENSXCOG00000019695cpsf39991.095Xiphophorus_couchianus
ENSHCOG00000007251cpsf35379.730ENSXCOG00000000957-8779.730Xiphophorus_couchianus
ENSHCOG00000007251cpsf39987.791ENSXMAG00000027291CPSF39987.791Xiphophorus_maculatus
ENSHCOG00000007251cpsf39991.387ENSXMAG00000009784cpsf39991.420Xiphophorus_maculatus

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