EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000007436 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 20138 bases
Position: chrKV880076.1:135407-155544
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000005725	RVT_1	PF00078.27	4.7e-17	1	1
ENSHCOP00000005713	RVT_1	PF00078.27	1.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000004898	-	2856	-	ENSHCOP00000005713	951 (aa)	-	-
ENSHCOT00000004878	-	2973	-	ENSHCOP00000005725	990 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000007436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000007436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000007436	-	96	70.000	ENSHCOG00000000471	-	83	70.000
ENSHCOG00000007436	-	99	55.755	ENSHCOG00000007389	-	94	55.755
ENSHCOG00000007436	-	98	58.025	ENSHCOG00000007397	-	92	58.025

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000007436	-	74	34.746	ENSACIG00000013116	-	80	34.951	Amphilophus_citrinellus
ENSHCOG00000007436	-	66	30.000	ENSACIG00000010787	-	70	30.000	Amphilophus_citrinellus
ENSHCOG00000007436	-	74	34.751	ENSACIG00000009025	-	91	34.751	Amphilophus_citrinellus
ENSHCOG00000007436	-	77	32.584	ENSACIG00000007038	-	90	30.819	Amphilophus_citrinellus
ENSHCOG00000007436	-	86	32.716	ENSACIG00000012161	-	83	32.716	Amphilophus_citrinellus
ENSHCOG00000007436	-	94	57.143	ENSAMXG00000042811	-	83	57.143	Astyanax_mexicanus
ENSHCOG00000007436	-	95	51.351	ENSCPBG00000003842	-	77	51.351	Chrysemys_picta_bellii
ENSHCOG00000007436	-	54	30.629	ENSCVAG00000004138	-	68	32.955	Cyprinodon_variegatus
ENSHCOG00000007436	-	85	50.649	ENSELUG00000004618	-	79	50.649	Esox_lucius
ENSHCOG00000007436	-	64	46.753	ENSELUG00000004597	-	74	46.753	Esox_lucius
ENSHCOG00000007436	-	74	41.772	ENSFHEG00000022106	-	85	33.948	Fundulus_heteroclitus
ENSHCOG00000007436	-	59	30.462	ENSFHEG00000002865	-	51	30.277	Fundulus_heteroclitus
ENSHCOG00000007436	-	77	32.032	ENSFHEG00000007211	-	84	31.064	Fundulus_heteroclitus
ENSHCOG00000007436	-	77	32.990	ENSFHEG00000002853	-	76	32.990	Fundulus_heteroclitus
ENSHCOG00000007436	-	52	31.810	ENSGMOG00000005227	-	98	31.810	Gadus_morhua
ENSHCOG00000007436	-	57	36.963	ENSLBEG00000004576	-	73	36.963	Labrus_bergylta
ENSHCOG00000007436	-	64	39.474	ENSLBEG00000003745	-	80	38.095	Labrus_bergylta
ENSHCOG00000007436	-	57	36.207	ENSLBEG00000006732	-	71	42.857	Labrus_bergylta
ENSHCOG00000007436	-	71	31.091	ENSLACG00000006357	-	97	31.091	Latimeria_chalumnae
ENSHCOG00000007436	-	55	30.217	ENSLACG00000009240	-	100	30.217	Latimeria_chalumnae
ENSHCOG00000007436	-	95	40.741	ENSLOCG00000011928	-	90	40.741	Lepisosteus_oculatus
ENSHCOG00000007436	-	94	41.975	ENSLOCG00000017064	-	89	41.975	Lepisosteus_oculatus
ENSHCOG00000007436	-	93	40.000	ENSMAMG00000019985	-	81	40.000	Mastacembelus_armatus
ENSHCOG00000007436	-	95	37.363	ENSONIG00000020875	-	89	30.056	Oreochromis_niloticus
ENSHCOG00000007436	-	79	42.857	ENSOMEG00000015368	-	90	42.857	Oryzias_melastigma
ENSHCOG00000007436	-	75	32.512	ENSPMGG00000017392	-	87	32.512	Periophthalmus_magnuspinnatus
ENSHCOG00000007436	-	70	30.357	ENSPMGG00000001593	-	64	32.184	Periophthalmus_magnuspinnatus
ENSHCOG00000007436	-	65	43.662	ENSPLAG00000022994	-	66	43.662	Poecilia_latipinna
ENSHCOG00000007436	-	65	43.836	ENSPLAG00000011810	-	66	43.836	Poecilia_latipinna
ENSHCOG00000007436	-	75	47.761	ENSPLAG00000011817	-	79	47.761	Poecilia_latipinna
ENSHCOG00000007436	-	64	46.479	ENSPLAG00000023379	-	83	46.479	Poecilia_latipinna
ENSHCOG00000007436	-	98	30.019	ENSPMEG00000003431	-	81	46.269	Poecilia_mexicana
ENSHCOG00000007436	-	63	46.479	ENSPMEG00000008574	-	62	46.479	Poecilia_mexicana
ENSHCOG00000007436	-	99	30.620	ENSPREG00000005456	-	89	30.620	Poecilia_reticulata
ENSHCOG00000007436	-	75	49.254	ENSPREG00000012484	-	60	49.254	Poecilia_reticulata
ENSHCOG00000007436	-	98	31.044	ENSPREG00000005756	-	93	31.044	Poecilia_reticulata
ENSHCOG00000007436	-	95	37.662	ENSPNAG00000007038	-	90	31.797	Pygocentrus_nattereri
ENSHCOG00000007436	-	97	30.819	ENSPNAG00000016635	-	89	30.819	Pygocentrus_nattereri
ENSHCOG00000007436	-	82	30.387	ENSPNAG00000017596	-	79	39.844	Pygocentrus_nattereri
ENSHCOG00000007436	-	96	30.656	ENSPNAG00000021754	-	89	30.656	Pygocentrus_nattereri
ENSHCOG00000007436	-	65	47.761	ENSXCOG00000008881	-	79	47.761	Xiphophorus_couchianus
ENSHCOG00000007436	-	95	42.353	ENSXCOG00000013093	-	84	42.353	Xiphophorus_couchianus
ENSHCOG00000007436	-	75	47.761	ENSXMAG00000028672	-	74	47.761	Xiphophorus_maculatus