EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000007440 (Gene tree)
Gene ID: 109521122
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3789 bases
Position: chrKV880104.1:621749-625537
Accession: 109521122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000005639	MMR_HSR1	PF01926.23	3.5e-05	1	1
ENSHCOP00000020903	MMR_HSR1	PF01926.23	4.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000004996	-	603	-	ENSHCOP00000020903	200 (aa)	-	-
ENSHCOT00000005021	-	549	XM_019878787	ENSHCOP00000005639	182 (aa)	XP_019734346	-

Gene Model

Click here to download ENSHCOG00000007440's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000007440's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000007440	rab13	87	40.957	ENSHCOG00000012834	-	80	40.957
ENSHCOG00000007440	rab13	91	44.848	ENSHCOG00000019224	rab14	77	44.848
ENSHCOG00000007440	rab13	72	30.435	ENSHCOG00000011881	arl4d	68	30.435
ENSHCOG00000007440	rab13	87	44.304	ENSHCOG00000006550	-	76	44.304
ENSHCOG00000007440	rab13	82	36.000	ENSHCOG00000002043	rras2	80	36.420
ENSHCOG00000007440	rab13	100	53.297	ENSHCOG00000017086	RAB15	85	53.297
ENSHCOG00000007440	rab13	86	38.750	ENSHCOG00000020527	rab34a	62	37.805
ENSHCOG00000007440	rab13	93	44.118	ENSHCOG00000007187	rab25b	74	44.118
ENSHCOG00000007440	rab13	93	52.353	ENSHCOG00000017123	-	79	52.353
ENSHCOG00000007440	rab13	90	36.364	ENSHCOG00000013919	rab23	96	36.181
ENSHCOG00000007440	rab13	96	38.547	ENSHCOG00000016322	RAB7A	86	38.547
ENSHCOG00000007440	rab13	91	44.970	ENSHCOG00000015692	si:dkey-34d22.5	78	44.970
ENSHCOG00000007440	rab13	87	43.902	ENSHCOG00000009133	zgc:101559	69	43.902
ENSHCOG00000007440	rab13	90	43.452	ENSHCOG00000005802	RAB9A	78	43.452
ENSHCOG00000007440	rab13	64	53.448	ENSHCOG00000010707	rab30	64	52.542
ENSHCOG00000007440	rab13	93	56.805	ENSHCOG00000019468	rab1ba	84	56.805
ENSHCOG00000007440	rab13	88	42.236	ENSHCOG00000004662	rab5c	72	42.236
ENSHCOG00000007440	rab13	97	46.023	ENSHCOG00000000954	-	81	46.023
ENSHCOG00000007440	rab13	95	30.000	ENSHCOG00000002948	dnajc27	66	30.000
ENSHCOG00000007440	rab13	93	57.988	ENSHCOG00000001137	rab1ab	83	57.988
ENSHCOG00000007440	rab13	97	45.455	ENSHCOG00000000232	rab11al	82	45.251
ENSHCOG00000007440	rab13	90	46.951	ENSHCOG00000002217	rab18b	87	44.693
ENSHCOG00000007440	rab13	96	39.106	ENSHCOG00000004225	-	88	39.106
ENSHCOG00000007440	rab13	87	44.937	ENSHCOG00000014711	rab6ba	76	44.937
ENSHCOG00000007440	rab13	92	47.619	ENSHCOG00000014428	rab2a	79	47.619
ENSHCOG00000007440	rab13	97	46.328	ENSHCOG00000002423	rab11bb	81	46.328
ENSHCOG00000007440	rab13	97	46.893	ENSHCOG00000005652	rab11a	82	46.893
ENSHCOG00000007440	rab13	92	37.572	ENSHCOG00000011080	kras	95	32.990
ENSHCOG00000007440	rab13	93	57.988	ENSHCOG00000010023	-	83	57.988
ENSHCOG00000007440	rab13	92	36.471	ENSHCOG00000018456	si:ch73-116o1.2	81	36.471
ENSHCOG00000007440	rab13	84	35.714	ENSHCOG00000003667	rhebl1	83	35.948
ENSHCOG00000007440	rab13	86	31.250	ENSHCOG00000015161	-	75	31.250
ENSHCOG00000007440	rab13	97	43.182	ENSHCOG00000013095	rab25a	95	39.801
ENSHCOG00000007440	rab13	58	30.769	ENSHCOG00000016255	arl3l2	61	30.769
ENSHCOG00000007440	rab13	94	50.000	ENSHCOG00000012376	rab12	71	50.000
ENSHCOG00000007440	rab13	91	45.455	ENSHCOG00000013180	-	77	45.455
ENSHCOG00000007440	rab13	90	40.237	ENSHCOG00000005024	rab9b	83	40.237
ENSHCOG00000007440	rab13	87	45.570	ENSHCOG00000013130	rab6bb	76	45.570
ENSHCOG00000007440	rab13	88	41.566	ENSHCOG00000001145	rab22a	83	41.566
ENSHCOG00000007440	rab13	79	37.241	ENSHCOG00000013807	rheb	79	36.735
ENSHCOG00000007440	rab13	90	46.386	ENSHCOG00000003981	RAB39B	78	46.386
ENSHCOG00000007440	rab13	64	30.769	ENSHCOG00000015600	arl3	62	30.769
ENSHCOG00000007440	rab13	97	45.198	ENSHCOG00000000985	-	80	47.239
ENSHCOG00000007440	rab13	87	43.038	ENSHCOG00000004404	rab41	75	43.038
ENSHCOG00000007440	rab13	89	33.333	ENSHCOG00000009757	ran	74	33.333
ENSHCOG00000007440	rab13	94	40.217	ENSHCOG00000003569	rab33ba	76	40.217
ENSHCOG00000007440	rab13	96	37.755	ENSHCOG00000020238	-	91	37.500
ENSHCOG00000007440	rab13	94	40.102	ENSHCOG00000004726	rab33a	84	40.102
ENSHCOG00000007440	rab13	90	38.235	ENSHCOG00000004086	rab9a	83	38.235
ENSHCOG00000007440	rab13	93	49.112	ENSHCOG00000006538	si:dkey-16l2.16	80	49.112
ENSHCOG00000007440	rab13	88	32.164	ENSHCOG00000019709	rasl11a	69	32.164
ENSHCOG00000007440	rab13	93	44.186	ENSHCOG00000019732	-	81	44.186

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000007440	rab13	95	86.127	ENSG00000143545	RAB13	99	73.762	Homo_sapiens
ENSHCOG00000007440	rab13	99	96.111	ENSACIG00000008584	rab13	87	96.111	Amphilophus_citrinellus
ENSHCOG00000007440	rab13	95	86.705	ENSANAG00000030247	-	99	74.020	Aotus_nancymaae
ENSHCOG00000007440	rab13	97	96.045	ENSAMXG00000030712	rab13	100	87.624	Astyanax_mexicanus
ENSHCOG00000007440	rab13	95	86.127	ENSBTAG00000017604	RAB13	85	86.127	Bos_taurus
ENSHCOG00000007440	rab13	88	48.148	WBGene00019317	K02E10.1	74	48.148	Caenorhabditis_elegans
ENSHCOG00000007440	rab13	97	84.659	ENSCJAG00000009933	-	99	73.039	Callithrix_jacchus
ENSHCOG00000007440	rab13	95	86.127	ENSCHIG00000022271	-	85	86.127	Capra_hircus
ENSHCOG00000007440	rab13	97	85.227	ENSCPOG00000011491	-	87	85.227	Cavia_porcellus
ENSHCOG00000007440	rab13	95	86.127	ENSCCAG00000028502	-	99	73.762	Cebus_capucinus
ENSHCOG00000007440	rab13	95	86.127	ENSCATG00000041779	-	99	73.762	Cercocebus_atys
ENSHCOG00000007440	rab13	98	83.708	ENSCLAG00000006603	-	99	72.772	Chinchilla_lanigera
ENSHCOG00000007440	rab13	95	86.127	ENSCANG00000036573	-	99	73.762	Colobus_angolensis_palliatus
ENSHCOG00000007440	rab13	95	86.127	ENSCGRG00001021505	Rab13	99	73.529	Cricetulus_griseus_chok1gshd
ENSHCOG00000007440	rab13	95	86.127	ENSCGRG00000012126	Rab13	99	73.529	Cricetulus_griseus_crigri
ENSHCOG00000007440	rab13	99	95.556	ENSCSEG00000002358	rab13	100	88.000	Cynoglossus_semilaevis
ENSHCOG00000007440	rab13	97	95.480	ENSDARG00000034771	rab13	100	87.000	Danio_rerio
ENSHCOG00000007440	rab13	95	87.283	ENSDORG00000001591	Rab13	99	74.257	Dipodomys_ordii
ENSHCOG00000007440	rab13	97	84.659	ENSEASG00005000683	-	99	73.267	Equus_asinus_asinus
ENSHCOG00000007440	rab13	97	84.659	ENSECAG00000016551	RAB13	99	73.267	Equus_caballus
ENSHCOG00000007440	rab13	97	80.682	ENSEEUG00000001233	-	100	71.921	Erinaceus_europaeus
ENSHCOG00000007440	rab13	97	92.655	ENSELUG00000012801	rab13	100	85.000	Esox_lucius
ENSHCOG00000007440	rab13	97	83.523	ENSFCAG00000045269	-	99	71.569	Felis_catus
ENSHCOG00000007440	rab13	72	89.313	ENSFDAG00000014469	-	99	89.313	Fukomys_damarensis
ENSHCOG00000007440	rab13	99	94.444	ENSFHEG00000021221	rab13	98	94.444	Fundulus_heteroclitus
ENSHCOG00000007440	rab13	97	95.480	ENSGACG00000011925	rab13	99	88.500	Gasterosteus_aculeatus
ENSHCOG00000007440	rab13	97	84.659	ENSGAGG00000000742	-	100	74.752	Gopherus_agassizii
ENSHCOG00000007440	rab13	95	86.127	ENSGGOG00000023693	RAB13	99	73.762	Gorilla_gorilla
ENSHCOG00000007440	rab13	98	82.584	ENSHGLG00000008749	RAB13	99	72.139	Heterocephalus_glaber_female
ENSHCOG00000007440	rab13	98	82.584	ENSHGLG00100013608	RAB13	99	72.139	Heterocephalus_glaber_male
ENSHCOG00000007440	rab13	98	93.855	ENSIPUG00000003199	rab13	100	84.577	Ictalurus_punctatus
ENSHCOG00000007440	rab13	95	87.283	ENSSTOG00000011222	-	99	74.146	Ictidomys_tridecemlineatus
ENSHCOG00000007440	rab13	97	85.227	ENSJJAG00000010575	Rab13	99	73.267	Jaculus_jaculus
ENSHCOG00000007440	rab13	98	92.737	ENSKMAG00000001908	rab13	99	87.097	Kryptolebias_marmoratus
ENSHCOG00000007440	rab13	97	96.610	ENSLBEG00000026779	rab13	100	89.000	Labrus_bergylta
ENSHCOG00000007440	rab13	98	76.966	ENSLACG00000008103	-	100	76.966	Latimeria_chalumnae
ENSHCOG00000007440	rab13	95	86.127	ENSMFAG00000041018	RAB13	99	73.762	Macaca_fascicularis
ENSHCOG00000007440	rab13	95	86.127	ENSMNEG00000028951	-	99	73.762	Macaca_nemestrina
ENSHCOG00000007440	rab13	95	86.127	ENSMLEG00000042247	-	99	73.762	Mandrillus_leucophaeus
ENSHCOG00000007440	rab13	99	95.028	ENSMAMG00000014602	rab13	100	88.500	Mastacembelus_armatus
ENSHCOG00000007440	rab13	95	85.549	ENSMAUG00000015713	Rab13	99	73.529	Mesocricetus_auratus
ENSHCOG00000007440	rab13	96	85.714	ENSMICG00000010340	-	99	74.627	Microcebus_murinus
ENSHCOG00000007440	rab13	95	86.705	ENSMOCG00000021448	Rab13	99	74.752	Microtus_ochrogaster
ENSHCOG00000007440	rab13	97	84.746	ENSMODG00000017295	-	74	84.746	Monodelphis_domestica
ENSHCOG00000007440	rab13	95	84.393	MGP_CAROLIEiJ_G0025227	Rab13	99	72.772	Mus_caroli
ENSHCOG00000007440	rab13	95	84.393	ENSMUSG00000027935	Rab13	99	73.134	Mus_musculus
ENSHCOG00000007440	rab13	95	84.393	MGP_PahariEiJ_G0026671	Rab13	100	71.707	Mus_pahari
ENSHCOG00000007440	rab13	95	85.549	ENSNGAG00000010309	Rab13	99	73.892	Nannospalax_galili
ENSHCOG00000007440	rab13	99	95.556	ENSNBRG00000004124	rab13	100	87.500	Neolamprologus_brichardi
ENSHCOG00000007440	rab13	97	84.659	ENSNLEG00000028944	-	90	84.659	Nomascus_leucogenys
ENSHCOG00000007440	rab13	97	84.746	ENSMEUG00000009667	-	99	73.762	Notamacropus_eugenii
ENSHCOG00000007440	rab13	97	83.523	ENSODEG00000010443	-	99	72.772	Octodon_degus
ENSHCOG00000007440	rab13	70	88.976	ENSODEG00000012634	-	100	88.976	Octodon_degus
ENSHCOG00000007440	rab13	99	96.667	ENSONIG00000006340	rab13	89	96.667	Oreochromis_niloticus
ENSHCOG00000007440	rab13	95	85.549	ENSOCUG00000006286	-	97	85.549	Oryctolagus_cuniculus
ENSHCOG00000007440	rab13	100	96.154	ENSOMEG00000008210	rab13	100	89.000	Oryzias_melastigma
ENSHCOG00000007440	rab13	97	83.523	ENSOGAG00000016969	-	99	73.267	Otolemur_garnettii
ENSHCOG00000007440	rab13	95	86.127	ENSPPAG00000028435	-	99	73.762	Pan_paniscus
ENSHCOG00000007440	rab13	97	83.523	ENSPPRG00000008865	-	99	71.569	Panthera_pardus
ENSHCOG00000007440	rab13	95	86.127	ENSPTRG00000001370	RAB13	99	73.762	Pan_troglodytes
ENSHCOG00000007440	rab13	95	86.127	ENSPANG00000004479	-	99	73.762	Papio_anubis
ENSHCOG00000007440	rab13	100	93.956	ENSPMGG00000007680	rab13	100	88.000	Periophthalmus_magnuspinnatus
ENSHCOG00000007440	rab13	69	78.788	ENSPEMG00000017353	-	99	78.788	Peromyscus_maniculatus_bairdii
ENSHCOG00000007440	rab13	97	84.746	ENSPCIG00000029350	-	99	73.762	Phascolarctos_cinereus
ENSHCOG00000007440	rab13	99	94.444	ENSPLAG00000005832	RAB13	97	93.407	Poecilia_latipinna
ENSHCOG00000007440	rab13	98	94.972	ENSPREG00000017567	rab13	100	86.500	Poecilia_reticulata
ENSHCOG00000007440	rab13	95	86.127	ENSPPYG00000000790	-	99	73.762	Pongo_abelii
ENSHCOG00000007440	rab13	97	85.227	ENSPCOG00000012189	-	99	74.627	Propithecus_coquereli
ENSHCOG00000007440	rab13	95	84.971	ENSPVAG00000011095	-	99	73.632	Pteropus_vampyrus
ENSHCOG00000007440	rab13	98	96.648	ENSPNAG00000004189	rab13	95	96.648	Pygocentrus_nattereri
ENSHCOG00000007440	rab13	95	84.971	ENSRNOG00000016733	Rab13	99	72.549	Rattus_norvegicus
ENSHCOG00000007440	rab13	95	86.127	ENSRBIG00000008552	-	99	73.762	Rhinopithecus_bieti
ENSHCOG00000007440	rab13	95	86.127	ENSRROG00000036885	-	99	73.762	Rhinopithecus_roxellana
ENSHCOG00000007440	rab13	95	86.127	ENSSBOG00000020342	-	99	74.129	Saimiri_boliviensis_boliviensis
ENSHCOG00000007440	rab13	97	85.311	ENSSHAG00000011866	-	99	74.257	Sarcophilus_harrisii
ENSHCOG00000007440	rab13	95	86.127	ENSSSCG00000006564	-	99	73.039	Sus_scrofa
ENSHCOG00000007440	rab13	97	97.727	ENSTRUG00000024177	rab13	100	90.000	Takifugu_rubripes
ENSHCOG00000007440	rab13	95	86.705	ENSTBEG00000012734	-	99	74.752	Tupaia_belangeri
ENSHCOG00000007440	rab13	95	86.127	ENSTTRG00000011183	-	99	73.039	Tursiops_truncatus
ENSHCOG00000007440	rab13	77	78.571	ENSXETG00000020729	rab13	100	67.500	Xenopus_tropicalis
ENSHCOG00000007440	rab13	100	92.857	ENSXCOG00000019533	rab13	97	92.857	Xiphophorus_couchianus