EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000007638 (Gene tree)
Gene ID: 109526412
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 11790 bases
Position: chrKV880257.1:221241-233030
Accession: 109526412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000005880	GTP_EFTU	PF00009.27	2.6e-63	1	1
ENSHCOP00000005893	GTP_EFTU	PF00009.27	4.8e-63	1	1
ENSHCOP00000005893	GTP_EFTU_D2	PF03144.25	2.2e-14	1	1
ENSHCOP00000005880	GTP_EFTU_D2	PF03144.25	2.4e-14	1	1
ENSHCOP00000005893	EFG_IV	PF03764.18	2e-36	1	1
ENSHCOP00000005880	EFG_IV	PF03764.18	1.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000004591	-	2418	XM_019887699	ENSHCOP00000005893	747 (aa)	XP_019743258	UPI00094E1AD8
ENSHCOT00000004617	-	1707	-	ENSHCOP00000005880	568 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000007638's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000007638's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000007638	gfm1	73	39.597	ENSHCOG00000001360	eef2b	72	39.597
ENSHCOG00000007638	gfm1	85	43.689	ENSHCOG00000008208	gfm2	98	44.660
ENSHCOG00000007638	gfm1	77	31.944	ENSHCOG00000004355	guf1	67	34.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000007638	gfm1	98	80.274	ENSG00000168827	GFM1	100	95.000	Homo_sapiens
ENSHCOG00000007638	gfm1	99	87.857	ENSAPOG00000016489	gfm1	98	86.773	Acanthochromis_polyacanthus
ENSHCOG00000007638	gfm1	97	80.909	ENSAMEG00000013542	GFM1	95	81.346	Ailuropoda_melanoleuca
ENSHCOG00000007638	gfm1	97	86.483	ENSACIG00000014465	gfm1	94	86.483	Amphilophus_citrinellus
ENSHCOG00000007638	gfm1	99	88.750	ENSAOCG00000006023	gfm1	100	87.684	Amphiprion_ocellaris
ENSHCOG00000007638	gfm1	99	88.571	ENSAPEG00000024499	gfm1	100	87.550	Amphiprion_percula
ENSHCOG00000007638	gfm1	100	88.636	ENSATEG00000013789	gfm1	100	88.636	Anabas_testudineus
ENSHCOG00000007638	gfm1	98	79.533	ENSAPLG00000005022	GFM1	100	80.414	Anas_platyrhynchos
ENSHCOG00000007638	gfm1	98	81.115	ENSACAG00000006829	GFM1	97	81.111	Anolis_carolinensis
ENSHCOG00000007638	gfm1	99	79.088	ENSANAG00000035983	GFM1	99	79.088	Aotus_nancymaae
ENSHCOG00000007638	gfm1	100	89.572	ENSACLG00000016586	gfm1	100	89.572	Astatotilapia_calliptera
ENSHCOG00000007638	gfm1	100	84.626	ENSAMXG00000013435	gfm1	98	85.753	Astyanax_mexicanus
ENSHCOG00000007638	gfm1	97	80.909	ENSBTAG00000027795	GFM1	97	79.917	Bos_taurus
ENSHCOG00000007638	gfm1	96	60.773	WBGene00009246	gfm-1	95	56.197	Caenorhabditis_elegans
ENSHCOG00000007638	gfm1	99	79.223	ENSCJAG00000000363	GFM1	99	79.223	Callithrix_jacchus
ENSHCOG00000007638	gfm1	97	81.091	ENSCAFG00000009006	GFM1	99	80.626	Canis_familiaris
ENSHCOG00000007638	gfm1	97	81.091	ENSCAFG00020005878	GFM1	98	81.206	Canis_lupus_dingo
ENSHCOG00000007638	gfm1	97	80.909	ENSCHIG00000015220	GFM1	95	81.066	Capra_hircus
ENSHCOG00000007638	gfm1	98	80.610	ENSTSYG00000002013	GFM1	99	78.877	Carlito_syrichta
ENSHCOG00000007638	gfm1	99	68.000	ENSCAPG00000005699	GFM1	97	70.376	Cavia_aperea
ENSHCOG00000007638	gfm1	98	80.251	ENSCPOG00000001194	GFM1	98	79.111	Cavia_porcellus
ENSHCOG00000007638	gfm1	98	79.533	ENSCCAG00000025561	GFM1	97	80.138	Cebus_capucinus
ENSHCOG00000007638	gfm1	99	79.541	ENSCATG00000037622	GFM1	99	79.357	Cercocebus_atys
ENSHCOG00000007638	gfm1	98	79.892	ENSCLAG00000002503	GFM1	97	79.098	Chinchilla_lanigera
ENSHCOG00000007638	gfm1	99	79.838	ENSCSAG00000012162	GFM1	98	79.838	Chlorocebus_sabaeus
ENSHCOG00000007638	gfm1	99	70.350	ENSCHOG00000004867	GFM1	98	70.350	Choloepus_hoffmanni
ENSHCOG00000007638	gfm1	100	79.144	ENSCPBG00000018367	GFM1	99	79.144	Chrysemys_picta_bellii
ENSHCOG00000007638	gfm1	95	59.601	ENSCING00000011960	-	96	57.531	Ciona_intestinalis
ENSHCOG00000007638	gfm1	95	61.553	ENSCSAVG00000008514	-	99	59.033	Ciona_savignyi
ENSHCOG00000007638	gfm1	98	80.274	ENSCANG00000031714	GFM1	99	79.223	Colobus_angolensis_palliatus
ENSHCOG00000007638	gfm1	97	80.692	ENSCGRG00001022095	GFM1	99	78.552	Cricetulus_griseus_chok1gshd
ENSHCOG00000007638	gfm1	97	80.692	ENSCGRG00000012043	GFM1	99	78.552	Cricetulus_griseus_crigri
ENSHCOG00000007638	gfm1	99	81.640	ENSCSEG00000017088	gfm1	99	82.158	Cynoglossus_semilaevis
ENSHCOG00000007638	gfm1	100	89.692	ENSCVAG00000004126	gfm1	100	89.692	Cyprinodon_variegatus
ENSHCOG00000007638	gfm1	100	82.219	ENSDARG00000063624	gfm1	100	82.219	Danio_rerio
ENSHCOG00000007638	gfm1	54	79.950	ENSDNOG00000016385	-	99	79.950	Dasypus_novemcinctus
ENSHCOG00000007638	gfm1	98	80.431	ENSDORG00000014165	Gfm1	97	79.041	Dipodomys_ordii
ENSHCOG00000007638	gfm1	95	70.610	FBgn0263133	mEFG1	95	67.842	Drosophila_melanogaster
ENSHCOG00000007638	gfm1	95	72.905	ENSETEG00000019197	GFM1	95	72.905	Echinops_telfairi
ENSHCOG00000007638	gfm1	89	64.103	ENSEBUG00000012794	gfm1	100	62.760	Eptatretus_burgeri
ENSHCOG00000007638	gfm1	95	60.140	ENSEEUG00000000429	GFM1	98	60.140	Erinaceus_europaeus
ENSHCOG00000007638	gfm1	100	84.893	ENSELUG00000014728	gfm1	100	84.893	Esox_lucius
ENSHCOG00000007638	gfm1	98	80.431	ENSFCAG00000013291	GFM1	97	80.082	Felis_catus
ENSHCOG00000007638	gfm1	90	80.149	ENSFALG00000007619	GFM1	99	80.149	Ficedula_albicollis
ENSHCOG00000007638	gfm1	98	80.251	ENSFDAG00000016559	GFM1	97	80.082	Fukomys_damarensis
ENSHCOG00000007638	gfm1	100	89.171	ENSFHEG00000006091	gfm1	100	89.171	Fundulus_heteroclitus
ENSHCOG00000007638	gfm1	98	87.120	ENSGMOG00000010161	gfm1	100	88.033	Gadus_morhua
ENSHCOG00000007638	gfm1	98	79.317	ENSGALG00000009634	GFM1	99	79.076	Gallus_gallus
ENSHCOG00000007638	gfm1	100	88.770	ENSGAFG00000012527	gfm1	100	88.770	Gambusia_affinis
ENSHCOG00000007638	gfm1	99	88.948	ENSGACG00000009864	gfm1	100	87.850	Gasterosteus_aculeatus
ENSHCOG00000007638	gfm1	98	80.274	ENSGGOG00000003085	GFM1	99	79.223	Gorilla_gorilla
ENSHCOG00000007638	gfm1	100	89.706	ENSHBUG00000002120	gfm1	100	89.706	Haplochromis_burtoni
ENSHCOG00000007638	gfm1	98	79.391	ENSHGLG00000016855	GFM1	98	78.484	Heterocephalus_glaber_female
ENSHCOG00000007638	gfm1	98	79.391	ENSHGLG00100013049	GFM1	98	78.484	Heterocephalus_glaber_male
ENSHCOG00000007638	gfm1	99	85.000	ENSIPUG00000005873	gfm1	100	83.556	Ictalurus_punctatus
ENSHCOG00000007638	gfm1	98	78.815	ENSSTOG00000010150	GFM1	99	77.688	Ictidomys_tridecemlineatus
ENSHCOG00000007638	gfm1	99	78.284	ENSJJAG00000016447	Gfm1	99	78.284	Jaculus_jaculus
ENSHCOG00000007638	gfm1	99	86.250	ENSKMAG00000020768	gfm1	100	84.626	Kryptolebias_marmoratus
ENSHCOG00000007638	gfm1	99	89.286	ENSLBEG00000021315	gfm1	100	90.157	Labrus_bergylta
ENSHCOG00000007638	gfm1	98	82.047	ENSLACG00000012295	GFM1	99	80.619	Latimeria_chalumnae
ENSHCOG00000007638	gfm1	97	80.028	ENSLOCG00000003778	gfm1	99	80.028	Lepisosteus_oculatus
ENSHCOG00000007638	gfm1	98	78.315	ENSLAFG00000010945	GFM1	99	78.042	Loxodonta_africana
ENSHCOG00000007638	gfm1	99	79.541	ENSMFAG00000035731	GFM1	99	79.491	Macaca_fascicularis
ENSHCOG00000007638	gfm1	99	79.541	ENSMMUG00000004961	GFM1	99	79.491	Macaca_mulatta
ENSHCOG00000007638	gfm1	100	79.095	ENSMNEG00000033245	GFM1	100	79.095	Macaca_nemestrina
ENSHCOG00000007638	gfm1	98	77.996	ENSMLEG00000030908	GFM1	99	78.912	Mandrillus_leucophaeus
ENSHCOG00000007638	gfm1	99	90.179	ENSMAMG00000011760	gfm1	100	88.636	Mastacembelus_armatus
ENSHCOG00000007638	gfm1	100	89.706	ENSMZEG00005016639	gfm1	100	89.706	Maylandia_zebra
ENSHCOG00000007638	gfm1	98	79.012	ENSMGAG00000010641	GFM1	98	79.012	Meleagris_gallopavo
ENSHCOG00000007638	gfm1	99	78.686	ENSMAUG00000000611	Gfm1	99	78.686	Mesocricetus_auratus
ENSHCOG00000007638	gfm1	98	80.137	ENSMICG00000049086	GFM1	96	80.137	Microcebus_murinus
ENSHCOG00000007638	gfm1	99	78.284	ENSMOCG00000000465	Gfm1	99	78.284	Microtus_ochrogaster
ENSHCOG00000007638	gfm1	97	89.669	ENSMMOG00000012538	gfm1	98	89.669	Mola_mola
ENSHCOG00000007638	gfm1	98	81.475	ENSMODG00000015673	GFM1	99	80.408	Monodelphis_domestica
ENSHCOG00000007638	gfm1	97	87.614	ENSMALG00000012508	gfm1	95	87.849	Monopterus_albus
ENSHCOG00000007638	gfm1	97	80.692	MGP_CAROLIEiJ_G0025052	Gfm1	99	78.150	Mus_caroli
ENSHCOG00000007638	gfm1	97	80.874	ENSMUSG00000027774	Gfm1	95	80.899	Mus_musculus
ENSHCOG00000007638	gfm1	97	81.056	MGP_PahariEiJ_G0026495	Gfm1	100	77.528	Mus_pahari
ENSHCOG00000007638	gfm1	97	80.874	MGP_SPRETEiJ_G0025994	Gfm1	95	80.899	Mus_spretus
ENSHCOG00000007638	gfm1	98	80.072	ENSMPUG00000002859	GFM1	97	80.110	Mustela_putorius_furo
ENSHCOG00000007638	gfm1	98	80.137	ENSMLUG00000000452	GFM1	96	80.137	Myotis_lucifugus
ENSHCOG00000007638	gfm1	98	79.676	ENSNGAG00000012375	Gfm1	97	79.396	Nannospalax_galili
ENSHCOG00000007638	gfm1	99	90.536	ENSNBRG00000004631	gfm1	99	90.659	Neolamprologus_brichardi
ENSHCOG00000007638	gfm1	98	80.274	ENSNLEG00000004176	GFM1	99	79.223	Nomascus_leucogenys
ENSHCOG00000007638	gfm1	97	73.140	ENSMEUG00000007784	GFM1	99	71.765	Notamacropus_eugenii
ENSHCOG00000007638	gfm1	98	79.892	ENSOPRG00000009860	GFM1	97	80.305	Ochotona_princeps
ENSHCOG00000007638	gfm1	99	80.249	ENSODEG00000004316	GFM1	95	81.373	Octodon_degus
ENSHCOG00000007638	gfm1	100	89.840	ENSONIG00000003772	gfm1	100	89.840	Oreochromis_niloticus
ENSHCOG00000007638	gfm1	98	80.645	ENSOCUG00000013561	GFM1	95	81.538	Oryctolagus_cuniculus
ENSHCOG00000007638	gfm1	95	89.831	ENSORLG00000006487	gfm1	100	89.831	Oryzias_latipes
ENSHCOG00000007638	gfm1	100	88.235	ENSORLG00020003362	gfm1	100	88.235	Oryzias_latipes_hni
ENSHCOG00000007638	gfm1	100	88.235	ENSORLG00015005829	gfm1	100	88.235	Oryzias_latipes_hsok
ENSHCOG00000007638	gfm1	100	89.706	ENSOMEG00000012894	gfm1	100	89.706	Oryzias_melastigma
ENSHCOG00000007638	gfm1	98	80.969	ENSOGAG00000008298	GFM1	97	79.808	Otolemur_garnettii
ENSHCOG00000007638	gfm1	97	80.727	ENSOARG00000002409	GFM1	98	80.168	Ovis_aries
ENSHCOG00000007638	gfm1	98	80.274	ENSPPAG00000033881	GFM1	99	79.223	Pan_paniscus
ENSHCOG00000007638	gfm1	98	80.431	ENSPPRG00000009281	GFM1	97	80.082	Panthera_pardus
ENSHCOG00000007638	gfm1	98	80.431	ENSPTIG00000012416	GFM1	97	79.945	Panthera_tigris_altaica
ENSHCOG00000007638	gfm1	98	80.274	ENSPTRG00000015570	GFM1	99	79.223	Pan_troglodytes
ENSHCOG00000007638	gfm1	99	79.541	ENSPANG00000016512	GFM1	99	79.223	Papio_anubis
ENSHCOG00000007638	gfm1	99	83.715	ENSPKIG00000004876	gfm1	99	83.715	Paramormyrops_kingsleyae
ENSHCOG00000007638	gfm1	100	80.080	ENSPSIG00000012567	GFM1	99	80.080	Pelodiscus_sinensis
ENSHCOG00000007638	gfm1	98	87.050	ENSPMGG00000014068	gfm1	100	87.310	Periophthalmus_magnuspinnatus
ENSHCOG00000007638	gfm1	97	80.692	ENSPEMG00000008942	Gfm1	99	78.150	Peromyscus_maniculatus_bairdii
ENSHCOG00000007638	gfm1	99	80.036	ENSPCIG00000020195	GFM1	98	78.549	Phascolarctos_cinereus
ENSHCOG00000007638	gfm1	100	89.572	ENSPFOG00000011022	gfm1	100	89.572	Poecilia_formosa
ENSHCOG00000007638	gfm1	99	90.000	ENSPLAG00000019585	gfm1	100	89.326	Poecilia_latipinna
ENSHCOG00000007638	gfm1	100	89.439	ENSPMEG00000012376	gfm1	100	89.439	Poecilia_mexicana
ENSHCOG00000007638	gfm1	100	89.171	ENSPREG00000001332	gfm1	95	89.171	Poecilia_reticulata
ENSHCOG00000007638	gfm1	99	79.012	ENSPPYG00000014244	GFM1	99	78.954	Pongo_abelii
ENSHCOG00000007638	gfm1	94	79.090	ENSPCAG00000008934	GFM1	100	79.090	Procavia_capensis
ENSHCOG00000007638	gfm1	98	80.431	ENSPCOG00000022259	GFM1	96	80.583	Propithecus_coquereli
ENSHCOG00000007638	gfm1	98	80.431	ENSPVAG00000013605	GFM1	97	79.945	Pteropus_vampyrus
ENSHCOG00000007638	gfm1	99	90.714	ENSPNYG00000006037	gfm1	99	90.797	Pundamilia_nyererei
ENSHCOG00000007638	gfm1	100	84.358	ENSPNAG00000001237	gfm1	100	84.358	Pygocentrus_nattereri
ENSHCOG00000007638	gfm1	97	81.421	ENSRNOG00000012873	Gfm1	95	81.320	Rattus_norvegicus
ENSHCOG00000007638	gfm1	98	80.274	ENSRBIG00000031363	GFM1	99	79.223	Rhinopithecus_bieti
ENSHCOG00000007638	gfm1	98	80.411	ENSRROG00000031081	GFM1	99	79.357	Rhinopithecus_roxellana
ENSHCOG00000007638	gfm1	95	58.487	YLR069C	-	93	54.875	Saccharomyces_cerevisiae
ENSHCOG00000007638	gfm1	99	79.088	ENSSBOG00000023252	GFM1	99	79.088	Saimiri_boliviensis_boliviensis
ENSHCOG00000007638	gfm1	98	80.755	ENSSHAG00000017772	GFM1	99	79.622	Sarcophilus_harrisii
ENSHCOG00000007638	gfm1	99	83.779	ENSSFOG00015003117	gfm1	98	84.218	Scleropages_formosus
ENSHCOG00000007638	gfm1	100	88.102	ENSSMAG00000013221	gfm1	100	88.102	Scophthalmus_maximus
ENSHCOG00000007638	gfm1	100	90.241	ENSSDUG00000018665	gfm1	100	90.241	Seriola_dumerili
ENSHCOG00000007638	gfm1	100	90.241	ENSSLDG00000020606	gfm1	100	90.241	Seriola_lalandi_dorsalis
ENSHCOG00000007638	gfm1	98	77.698	ENSSPUG00000018686	GFM1	97	78.333	Sphenodon_punctatus
ENSHCOG00000007638	gfm1	100	90.241	ENSSPAG00000008800	gfm1	100	90.241	Stegastes_partitus
ENSHCOG00000007638	gfm1	97	80.182	ENSSSCG00000025651	GFM1	96	79.092	Sus_scrofa
ENSHCOG00000007638	gfm1	100	86.631	ENSTRUG00000009244	gfm1	100	86.631	Takifugu_rubripes
ENSHCOG00000007638	gfm1	100	87.834	ENSTNIG00000007729	gfm1	100	87.834	Tetraodon_nigroviridis
ENSHCOG00000007638	gfm1	89	72.090	ENSTBEG00000017404	GFM1	89	72.090	Tupaia_belangeri
ENSHCOG00000007638	gfm1	97	80.727	ENSTTRG00000001735	GFM1	99	77.926	Tursiops_truncatus
ENSHCOG00000007638	gfm1	98	80.610	ENSUAMG00000026381	GFM1	96	80.583	Ursus_americanus
ENSHCOG00000007638	gfm1	98	80.610	ENSUMAG00000011268	GFM1	96	80.583	Ursus_maritimus
ENSHCOG00000007638	gfm1	98	77.158	ENSVPAG00000009444	GFM1	97	76.891	Vicugna_pacos
ENSHCOG00000007638	gfm1	99	79.501	ENSVVUG00000020091	GFM1	99	80.328	Vulpes_vulpes
ENSHCOG00000007638	gfm1	97	83.636	ENSXETG00000032551	GFM1	95	84.432	Xenopus_tropicalis
ENSHCOG00000007638	gfm1	71	85.468	ENSXCOG00000012590	gfm1	97	81.967	Xiphophorus_couchianus
ENSHCOG00000007638	gfm1	100	89.572	ENSXMAG00000000261	gfm1	100	89.572	Xiphophorus_maculatus