EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000007894 (Gene tree)
Gene ID: 109516366
Gene Symbol: -
Alias: zgc:153698
Full Name: RNA binding motif single stranded interacting protein 3
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 230160 bases
Position: chrKV879956.1:522456-752615
Accession: 109516366
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000006156	RRM_1	PF00076.22	4.1e-31	1	2
ENSHCOP00000006156	RRM_1	PF00076.22	4.1e-31	2	2
ENSHCOP00000006146	RRM_1	PF00076.22	4.3e-31	1	2
ENSHCOP00000006146	RRM_1	PF00076.22	4.3e-31	2	2
ENSHCOP00000021234	RRM_1	PF00076.22	4.8e-31	1	2
ENSHCOP00000021234	RRM_1	PF00076.22	4.8e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000004140	-	2480	XM_019870862	ENSHCOP00000006156	399 (aa)	XP_019726421	UPI00094E91E6
ENSHCOT00000004158	-	2510	XM_019870860	ENSHCOP00000021234	417 (aa)	XP_019726419	UPI00094EEBF5
ENSHCOT00000004148	-	2387	-	ENSHCOP00000006146	368 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000007894's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000007894's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000007894	-	82	78.947	ENSHCOG00000020072	rbms2a	86	78.144
ENSHCOG00000007894	-	98	68.421	ENSHCOG00000019929	rbms2b	87	69.774
ENSHCOG00000007894	-	50	33.684	ENSHCOG00000012694	pabpc4	59	33.684
ENSHCOG00000007894	-	82	71.475	ENSHCOG00000016668	RBMS1	90	65.181
ENSHCOG00000007894	-	82	61.111	ENSHCOG00000020097	rbms1a	87	60.059
ENSHCOG00000007894	-	52	37.255	ENSHCOG00000005961	elavl2	68	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000007894	-	99	87.411	ENSG00000144642	RBMS3	100	89.394	Homo_sapiens
ENSHCOG00000007894	-	99	73.144	ENSAPOG00000007266	rbms3	93	80.052	Acanthochromis_polyacanthus
ENSHCOG00000007894	-	100	97.362	ENSAPOG00000003432	-	100	97.362	Acanthochromis_polyacanthus
ENSHCOG00000007894	-	72	83.553	ENSAMEG00000005947	RBMS3	99	83.553	Ailuropoda_melanoleuca
ENSHCOG00000007894	-	91	73.569	ENSACIG00000021113	RBMS3	98	72.606	Amphilophus_citrinellus
ENSHCOG00000007894	-	87	97.492	ENSACIG00000006987	-	87	97.492	Amphilophus_citrinellus
ENSHCOG00000007894	-	98	97.449	ENSAOCG00000024104	-	100	90.138	Amphiprion_ocellaris
ENSHCOG00000007894	-	99	81.030	ENSAOCG00000021274	rbms3	99	81.030	Amphiprion_ocellaris
ENSHCOG00000007894	-	84	83.851	ENSAPEG00000016299	rbms3	87	86.061	Amphiprion_percula
ENSHCOG00000007894	-	100	89.209	ENSAPEG00000009481	-	100	89.688	Amphiprion_percula
ENSHCOG00000007894	-	100	97.602	ENSATEG00000008433	-	100	97.602	Anabas_testudineus
ENSHCOG00000007894	-	99	81.412	ENSATEG00000024295	rbms3	99	81.882	Anabas_testudineus
ENSHCOG00000007894	-	99	85.082	ENSAPLG00000012270	RBMS3	99	84.382	Anas_platyrhynchos
ENSHCOG00000007894	-	99	88.095	ENSACAG00000028664	RBMS3	99	88.333	Anolis_carolinensis
ENSHCOG00000007894	-	99	84.793	ENSANAG00000021899	RBMS3	99	84.793	Aotus_nancymaae
ENSHCOG00000007894	-	99	80.660	ENSACLG00000018506	rbms3	99	81.132	Astatotilapia_calliptera
ENSHCOG00000007894	-	98	96.939	ENSACLG00000008976	-	94	88.636	Astatotilapia_calliptera
ENSHCOG00000007894	-	63	86.580	ENSAMXG00000043770	-	100	85.271	Astyanax_mexicanus
ENSHCOG00000007894	-	99	89.157	ENSAMXG00000020388	rbms3	99	89.157	Astyanax_mexicanus
ENSHCOG00000007894	-	99	88.361	ENSBTAG00000044062	RBMS3	99	88.361	Bos_taurus
ENSHCOG00000007894	-	99	84.793	ENSCJAG00000004312	RBMS3	99	84.793	Callithrix_jacchus
ENSHCOG00000007894	-	99	84.211	ENSCAFG00000005464	RBMS3	99	84.211	Canis_familiaris
ENSHCOG00000007894	-	99	84.211	ENSCAFG00020024980	RBMS3	99	84.211	Canis_lupus_dingo
ENSHCOG00000007894	-	99	87.886	ENSCHIG00000009144	RBMS3	99	87.886	Capra_hircus
ENSHCOG00000007894	-	79	85.196	ENSTSYG00000002615	RBMS3	99	85.196	Carlito_syrichta
ENSHCOG00000007894	-	92	83.060	ENSCAPG00000017783	RBMS3	95	82.086	Cavia_aperea
ENSHCOG00000007894	-	99	87.740	ENSCPOG00000006457	RBMS3	99	87.740	Cavia_porcellus
ENSHCOG00000007894	-	99	84.793	ENSCCAG00000008671	RBMS3	99	84.793	Cebus_capucinus
ENSHCOG00000007894	-	100	84.439	ENSCATG00000013222	RBMS3	100	84.439	Cercocebus_atys
ENSHCOG00000007894	-	99	86.936	ENSCLAG00000005866	RBMS3	99	86.936	Chinchilla_lanigera
ENSHCOG00000007894	-	68	86.716	ENSCSAG00000009655	RBMS3	99	86.716	Chlorocebus_sabaeus
ENSHCOG00000007894	-	87	85.311	ENSCHOG00000000758	RBMS3	86	85.311	Choloepus_hoffmanni
ENSHCOG00000007894	-	99	87.857	ENSCPBG00000022678	RBMS3	99	87.857	Chrysemys_picta_bellii
ENSHCOG00000007894	-	99	84.562	ENSCANG00000032137	RBMS3	99	84.562	Colobus_angolensis_palliatus
ENSHCOG00000007894	-	99	85.817	ENSCGRG00001007243	Rbms3	99	85.817	Cricetulus_griseus_chok1gshd
ENSHCOG00000007894	-	99	85.817	ENSCGRG00000004599	Rbms3	99	85.817	Cricetulus_griseus_crigri
ENSHCOG00000007894	-	100	96.403	ENSCSEG00000014677	-	94	97.942	Cynoglossus_semilaevis
ENSHCOG00000007894	-	99	80.516	ENSCSEG00000010011	RBMS3	99	80.986	Cynoglossus_semilaevis
ENSHCOG00000007894	-	100	97.122	ENSCVAG00000022814	-	100	97.389	Cyprinodon_variegatus
ENSHCOG00000007894	-	99	82.185	ENSCVAG00000022354	rbms3	99	82.185	Cyprinodon_variegatus
ENSHCOG00000007894	-	99	88.434	ENSDARG00000044574	rbms3	95	94.161	Danio_rerio
ENSHCOG00000007894	-	99	86.936	ENSDNOG00000016645	RBMS3	96	86.936	Dasypus_novemcinctus
ENSHCOG00000007894	-	99	86.698	ENSDORG00000007220	Rbms3	99	86.698	Dipodomys_ordii
ENSHCOG00000007894	-	84	70.000	ENSETEG00000009485	-	80	70.000	Echinops_telfairi
ENSHCOG00000007894	-	75	54.122	ENSEBUG00000005830	rbms3	85	56.107	Eptatretus_burgeri
ENSHCOG00000007894	-	99	87.173	ENSEASG00005006152	RBMS3	99	87.173	Equus_asinus_asinus
ENSHCOG00000007894	-	99	87.173	ENSECAG00000017871	RBMS3	99	87.173	Equus_caballus
ENSHCOG00000007894	-	90	78.589	ENSEEUG00000014337	RBMS3	100	78.589	Erinaceus_europaeus
ENSHCOG00000007894	-	99	78.774	ENSELUG00000002862	rbms3	99	78.774	Esox_lucius
ENSHCOG00000007894	-	96	95.039	ENSELUG00000006905	-	98	95.885	Esox_lucius
ENSHCOG00000007894	-	99	86.936	ENSFCAG00000002130	RBMS3	99	86.936	Felis_catus
ENSHCOG00000007894	-	99	87.619	ENSFALG00000009165	RBMS3	99	87.619	Ficedula_albicollis
ENSHCOG00000007894	-	99	86.461	ENSFDAG00000008278	RBMS3	99	86.461	Fukomys_damarensis
ENSHCOG00000007894	-	96	75.069	ENSFHEG00000004787	RBMS3	94	75.000	Fundulus_heteroclitus
ENSHCOG00000007894	-	94	87.940	ENSGMOG00000002600	-	96	87.940	Gadus_morhua
ENSHCOG00000007894	-	99	87.619	ENSGALG00000011439	RBMS3	99	87.619	Gallus_gallus
ENSHCOG00000007894	-	99	81.754	ENSGAFG00000000168	rbms3	99	81.754	Gambusia_affinis
ENSHCOG00000007894	-	100	97.362	ENSGAFG00000003329	-	100	97.362	Gambusia_affinis
ENSHCOG00000007894	-	68	87.132	ENSGAGG00000004039	RBMS3	99	87.132	Gopherus_agassizii
ENSHCOG00000007894	-	99	84.793	ENSGGOG00000007228	RBMS3	99	84.793	Gorilla_gorilla
ENSHCOG00000007894	-	98	96.939	ENSHBUG00000019785	-	96	92.841	Haplochromis_burtoni
ENSHCOG00000007894	-	63	84.015	ENSHBUG00000021196	rbms3	94	84.015	Haplochromis_burtoni
ENSHCOG00000007894	-	99	86.936	ENSHGLG00000002170	RBMS3	99	86.936	Heterocephalus_glaber_female
ENSHCOG00000007894	-	99	86.936	ENSHGLG00100014278	RBMS3	99	86.936	Heterocephalus_glaber_male
ENSHCOG00000007894	-	99	89.157	ENSIPUG00000017680	rbms3	99	89.157	Ictalurus_punctatus
ENSHCOG00000007894	-	99	87.173	ENSSTOG00000006324	RBMS3	99	87.173	Ictidomys_tridecemlineatus
ENSHCOG00000007894	-	98	85.101	ENSJJAG00000014708	Rbms3	99	83.848	Jaculus_jaculus
ENSHCOG00000007894	-	100	96.643	ENSKMAG00000012586	-	100	96.643	Kryptolebias_marmoratus
ENSHCOG00000007894	-	99	80.140	ENSKMAG00000020500	rbms3	99	80.140	Kryptolebias_marmoratus
ENSHCOG00000007894	-	63	74.340	ENSLBEG00000006677	rbms3	97	74.340	Labrus_bergylta
ENSHCOG00000007894	-	100	95.923	ENSLBEG00000027388	-	100	95.923	Labrus_bergylta
ENSHCOG00000007894	-	99	89.737	ENSLACG00000010581	RBMS3	99	89.976	Latimeria_chalumnae
ENSHCOG00000007894	-	73	91.034	ENSLOCG00000002328	rbms3	99	91.034	Lepisosteus_oculatus
ENSHCOG00000007894	-	99	83.982	ENSLAFG00000000354	RBMS3	99	83.982	Loxodonta_africana
ENSHCOG00000007894	-	99	87.173	ENSMFAG00000033300	RBMS3	99	87.173	Macaca_fascicularis
ENSHCOG00000007894	-	99	87.173	ENSMMUG00000004404	RBMS3	99	87.173	Macaca_mulatta
ENSHCOG00000007894	-	99	84.562	ENSMNEG00000035839	RBMS3	99	84.562	Macaca_nemestrina
ENSHCOG00000007894	-	100	84.439	ENSMLEG00000029464	RBMS3	100	84.439	Mandrillus_leucophaeus
ENSHCOG00000007894	-	99	81.455	ENSMAMG00000024043	rbms3	99	82.864	Mastacembelus_armatus
ENSHCOG00000007894	-	98	96.684	ENSMAMG00000002176	-	88	96.692	Mastacembelus_armatus
ENSHCOG00000007894	-	98	96.939	ENSMZEG00005026469	-	96	94.159	Maylandia_zebra
ENSHCOG00000007894	-	99	80.660	ENSMZEG00005006308	rbms3	99	81.132	Maylandia_zebra
ENSHCOG00000007894	-	99	85.817	ENSMAUG00000016436	Rbms3	99	85.817	Mesocricetus_auratus
ENSHCOG00000007894	-	99	84.793	ENSMICG00000049249	RBMS3	99	84.793	Microcebus_murinus
ENSHCOG00000007894	-	99	85.577	ENSMOCG00000006997	Rbms3	99	85.577	Microtus_ochrogaster
ENSHCOG00000007894	-	100	95.683	ENSMMOG00000015071	-	100	95.683	Mola_mola
ENSHCOG00000007894	-	84	84.688	ENSMMOG00000008471	RBMS3	89	86.970	Mola_mola
ENSHCOG00000007894	-	99	80.225	ENSMODG00000015125	RBMS3	99	79.418	Monodelphis_domestica
ENSHCOG00000007894	-	100	96.882	ENSMALG00000009155	-	100	96.882	Monopterus_albus
ENSHCOG00000007894	-	99	81.221	ENSMALG00000019536	RBMS3	99	79.529	Monopterus_albus
ENSHCOG00000007894	-	99	85.096	MGP_CAROLIEiJ_G0032783	Rbms3	100	90.821	Mus_caroli
ENSHCOG00000007894	-	99	85.577	ENSMUSG00000039607	Rbms3	100	91.787	Mus_musculus
ENSHCOG00000007894	-	99	85.372	MGP_PahariEiJ_G0015650	Rbms3	100	91.787	Mus_pahari
ENSHCOG00000007894	-	99	85.577	MGP_SPRETEiJ_G0033930	Rbms3	100	91.787	Mus_spretus
ENSHCOG00000007894	-	99	84.211	ENSMPUG00000011956	RBMS3	99	84.211	Mustela_putorius_furo
ENSHCOG00000007894	-	99	87.648	ENSMLUG00000000659	RBMS3	99	87.648	Myotis_lucifugus
ENSHCOG00000007894	-	99	87.500	ENSNGAG00000014039	Rbms3	99	87.500	Nannospalax_galili
ENSHCOG00000007894	-	100	96.643	ENSNBRG00000018065	-	100	96.643	Neolamprologus_brichardi
ENSHCOG00000007894	-	99	84.793	ENSNLEG00000004129	RBMS3	99	84.793	Nomascus_leucogenys
ENSHCOG00000007894	-	99	78.082	ENSMEUG00000004772	RBMS3	99	78.082	Notamacropus_eugenii
ENSHCOG00000007894	-	99	84.296	ENSOPRG00000006808	RBMS3	85	84.296	Ochotona_princeps
ENSHCOG00000007894	-	99	87.411	ENSODEG00000003651	RBMS3	99	87.411	Octodon_degus
ENSHCOG00000007894	-	99	75.355	ENSONIG00000007172	rbms3	99	75.829	Oreochromis_niloticus
ENSHCOG00000007894	-	99	85.219	ENSOANG00000010529	RBMS3	99	85.219	Ornithorhynchus_anatinus
ENSHCOG00000007894	-	99	83.524	ENSOCUG00000004840	RBMS3	99	83.524	Oryctolagus_cuniculus
ENSHCOG00000007894	-	99	80.569	ENSORLG00000005370	RBMS3	99	80.569	Oryzias_latipes
ENSHCOG00000007894	-	100	96.403	ENSORLG00000002306	-	100	96.403	Oryzias_latipes
ENSHCOG00000007894	-	99	80.569	ENSORLG00020022674	RBMS3	99	80.569	Oryzias_latipes_hni
ENSHCOG00000007894	-	100	96.643	ENSORLG00020008496	-	100	96.643	Oryzias_latipes_hni
ENSHCOG00000007894	-	100	96.643	ENSORLG00015015719	-	100	96.643	Oryzias_latipes_hsok
ENSHCOG00000007894	-	99	80.806	ENSORLG00015005509	rbms3	99	80.806	Oryzias_latipes_hsok
ENSHCOG00000007894	-	98	96.438	ENSOMEG00000007677	-	100	96.345	Oryzias_melastigma
ENSHCOG00000007894	-	99	81.280	ENSOMEG00000014805	RBMS3	99	81.280	Oryzias_melastigma
ENSHCOG00000007894	-	99	84.211	ENSOARG00000014684	RBMS3	99	84.211	Ovis_aries
ENSHCOG00000007894	-	99	84.793	ENSPPAG00000036519	RBMS3	99	84.793	Pan_paniscus
ENSHCOG00000007894	-	99	84.101	ENSPPRG00000002761	RBMS3	99	84.101	Panthera_pardus
ENSHCOG00000007894	-	99	86.698	ENSPTIG00000011568	RBMS3	99	86.698	Panthera_tigris_altaica
ENSHCOG00000007894	-	99	87.411	ENSPTRG00000014709	RBMS3	99	87.411	Pan_troglodytes
ENSHCOG00000007894	-	100	84.439	ENSPANG00000010234	RBMS3	100	84.439	Papio_anubis
ENSHCOG00000007894	-	50	93.237	ENSPKIG00000016025	-	73	93.237	Paramormyrops_kingsleyae
ENSHCOG00000007894	-	62	90.698	ENSPKIG00000007989	-	100	90.698	Paramormyrops_kingsleyae
ENSHCOG00000007894	-	99	87.619	ENSPSIG00000005269	RBMS3	99	87.619	Pelodiscus_sinensis
ENSHCOG00000007894	-	96	96.606	ENSPMGG00000021683	-	100	96.606	Periophthalmus_magnuspinnatus
ENSHCOG00000007894	-	84	83.962	ENSPMGG00000021544	rbms3	86	85.455	Periophthalmus_magnuspinnatus
ENSHCOG00000007894	-	99	82.892	ENSPEMG00000001117	Rbms3	99	82.892	Peromyscus_maniculatus_bairdii
ENSHCOG00000007894	-	80	93.243	ENSPCIG00000006106	RBMS3	88	89.671	Phascolarctos_cinereus
ENSHCOG00000007894	-	99	81.991	ENSPFOG00000017887	rbms3	99	81.991	Poecilia_formosa
ENSHCOG00000007894	-	80	80.124	ENSPLAG00000016866	-	82	80.124	Poecilia_latipinna
ENSHCOG00000007894	-	100	97.362	ENSPMEG00000002993	-	100	97.362	Poecilia_mexicana
ENSHCOG00000007894	-	98	97.704	ENSPREG00000018221	-	97	95.238	Poecilia_reticulata
ENSHCOG00000007894	-	100	80.378	ENSPREG00000011880	rbms3	100	80.378	Poecilia_reticulata
ENSHCOG00000007894	-	99	71.396	ENSPPYG00000014050	RBMS3	82	71.396	Pongo_abelii
ENSHCOG00000007894	-	99	64.760	ENSPCAG00000006307	RBMS3	99	64.760	Procavia_capensis
ENSHCOG00000007894	-	99	85.023	ENSPCOG00000017136	RBMS3	99	85.023	Propithecus_coquereli
ENSHCOG00000007894	-	89	85.399	ENSPVAG00000014037	RBMS3	99	75.744	Pteropus_vampyrus
ENSHCOG00000007894	-	100	96.882	ENSPNYG00000012624	-	100	96.882	Pundamilia_nyererei
ENSHCOG00000007894	-	99	80.425	ENSPNYG00000010546	rbms3	99	80.896	Pundamilia_nyererei
ENSHCOG00000007894	-	99	89.157	ENSPNAG00000001800	rbms3	99	89.157	Pygocentrus_nattereri
ENSHCOG00000007894	-	99	85.817	ENSRNOG00000025881	Rbms3	99	85.817	Rattus_norvegicus
ENSHCOG00000007894	-	99	84.332	ENSRBIG00000035863	RBMS3	99	84.332	Rhinopithecus_bieti
ENSHCOG00000007894	-	92	86.316	ENSRROG00000027512	RBMS3	94	85.013	Rhinopithecus_roxellana
ENSHCOG00000007894	-	99	84.793	ENSSBOG00000020232	RBMS3	99	84.793	Saimiri_boliviensis_boliviensis
ENSHCOG00000007894	-	91	90.774	ENSSHAG00000002411	RBMS3	96	89.017	Sarcophilus_harrisii
ENSHCOG00000007894	-	100	92.806	ENSSFOG00015008578	rbms3	100	92.806	Scleropages_formosus
ENSHCOG00000007894	-	99	77.752	ENSSMAG00000004997	rbms3	99	82.289	Scophthalmus_maximus
ENSHCOG00000007894	-	97	92.060	ENSSMAG00000020065	-	97	92.060	Scophthalmus_maximus
ENSHCOG00000007894	-	99	81.221	ENSSDUG00000013656	RBMS3	99	81.690	Seriola_dumerili
ENSHCOG00000007894	-	100	97.362	ENSSDUG00000019287	-	100	97.362	Seriola_dumerili
ENSHCOG00000007894	-	99	80.886	ENSSLDG00000020276	RBMS3	99	81.352	Seriola_lalandi_dorsalis
ENSHCOG00000007894	-	100	97.362	ENSSLDG00000013224	-	100	97.362	Seriola_lalandi_dorsalis
ENSHCOG00000007894	-	80	78.041	ENSSARG00000000695	RBMS3	94	73.429	Sorex_araneus
ENSHCOG00000007894	-	72	86.348	ENSSPUG00000017197	RBMS3	97	85.235	Sphenodon_punctatus
ENSHCOG00000007894	-	99	80.796	ENSSPAG00000020693	rbms3	99	81.265	Stegastes_partitus
ENSHCOG00000007894	-	98	97.449	ENSSPAG00000003983	-	100	88.991	Stegastes_partitus
ENSHCOG00000007894	-	99	87.411	ENSSSCG00000036381	RBMS3	99	87.411	Sus_scrofa
ENSHCOG00000007894	-	80	85.152	ENSTGUG00000003572	RBMS3	99	85.152	Taeniopygia_guttata
ENSHCOG00000007894	-	99	79.577	ENSTRUG00000021719	RBMS3	99	79.577	Takifugu_rubripes
ENSHCOG00000007894	-	100	85.511	ENSTRUG00000007482	-	100	85.919	Takifugu_rubripes
ENSHCOG00000007894	-	80	93.581	ENSTBEG00000005362	RBMS3	94	86.571	Tupaia_belangeri
ENSHCOG00000007894	-	99	83.982	ENSTTRG00000006202	RBMS3	99	83.982	Tursiops_truncatus
ENSHCOG00000007894	-	99	84.211	ENSUMAG00000000263	RBMS3	99	84.211	Ursus_maritimus
ENSHCOG00000007894	-	91	76.178	ENSVPAG00000003842	RBMS3	94	74.872	Vicugna_pacos
ENSHCOG00000007894	-	92	86.162	ENSVVUG00000004660	RBMS3	94	91.743	Vulpes_vulpes
ENSHCOG00000007894	-	73	82.237	ENSXETG00000032055	RBMS3	98	82.237	Xenopus_tropicalis
ENSHCOG00000007894	-	96	82.005	ENSXCOG00000019600	-	98	81.675	Xiphophorus_couchianus
ENSHCOG00000007894	-	100	97.602	ENSXMAG00000014382	-	100	97.602	Xiphophorus_maculatus
ENSHCOG00000007894	-	99	79.905	ENSXMAG00000021783	rbms3	99	79.196	Xiphophorus_maculatus