EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000008016 (Gene tree)
Gene ID: 109515689
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 2165 bases
Position: chrKV879951.1:1588080-1590244
Accession: 109515689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000021308	RRM_1	PF00076.22	7e-27	1	2
ENSHCOP00000021308	RRM_1	PF00076.22	7e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000003994	-	717	XM_019869654	ENSHCOP00000021308	238 (aa)	XP_019725213	-

Gene Model

Click here to download ENSHCOG00000008016's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG
hcq05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000008016	-	77	77.889	ENSHCOG00000018918	srsf1a	77	79.397
ENSHCOG00000008016	-	92	43.348	ENSHCOG00000017311	srsf9	76	48.925
ENSHCOG00000008016	-	89	32.895	ENSHCOG00000002740	srsf6a	74	36.441
ENSHCOG00000008016	-	65	37.079	ENSHCOG00000017557	srsf5a	67	34.928
ENSHCOG00000008016	-	63	41.573	ENSHCOG00000005592	srsf5b	58	43.750
ENSHCOG00000008016	-	93	34.274	ENSHCOG00000012540	srsf4	85	34.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008016	-	72	83.243	ENSACIG00000002623	-	95	83.784	Amphilophus_citrinellus
ENSHCOG00000008016	-	77	81.250	ENSACLG00000005676	-	77	83.333	Astatotilapia_calliptera
ENSHCOG00000008016	-	92	71.193	ENSACLG00000021693	-	80	78.922	Astatotilapia_calliptera
ENSHCOG00000008016	-	74	56.345	WBGene00004700	rsp-3	75	58.586	Caenorhabditis_elegans
ENSHCOG00000008016	-	51	66.142	ENSCING00000000257	-	76	65.625	Ciona_intestinalis
ENSHCOG00000008016	-	73	67.760	ENSCING00000007375	-	76	67.760	Ciona_intestinalis
ENSHCOG00000008016	-	51	59.690	ENSCSAVG00000003567	-	78	58.779	Ciona_savignyi
ENSHCOG00000008016	-	73	66.667	ENSCSAVG00000006093	-	91	66.667	Ciona_savignyi
ENSHCOG00000008016	-	73	64.550	FBgn0283477	SF2	73	66.138	Drosophila_melanogaster
ENSHCOG00000008016	-	95	66.953	ENSEBUG00000009582	-	82	74.737	Eptatretus_burgeri
ENSHCOG00000008016	-	78	80.597	ENSFHEG00000017425	-	97	80.851	Fundulus_heteroclitus
ENSHCOG00000008016	-	72	81.319	ENSGMOG00000010606	-	96	82.967	Gadus_morhua
ENSHCOG00000008016	-	77	81.865	ENSGAFG00000012721	-	78	82.902	Gambusia_affinis
ENSHCOG00000008016	-	79	80.488	ENSGAFG00000000609	-	80	80.693	Gambusia_affinis
ENSHCOG00000008016	-	72	82.320	ENSGACG00000011094	-	96	83.425	Gasterosteus_aculeatus
ENSHCOG00000008016	-	80	78.947	ENSHBUG00000015576	-	80	79.310	Haplochromis_burtoni
ENSHCOG00000008016	-	50	72.269	ENSHBUG00000015600	-	95	72.269	Haplochromis_burtoni
ENSHCOG00000008016	-	79	77.889	ENSMFAG00000034223	-	66	78.894	Macaca_fascicularis
ENSHCOG00000008016	-	77	81.250	ENSMZEG00005007947	-	77	83.333	Maylandia_zebra
ENSHCOG00000008016	-	77	81.683	ENSMZEG00005019071	-	98	80.000	Maylandia_zebra
ENSHCOG00000008016	-	77	80.102	ENSMMOG00000018849	-	78	80.612	Mola_mola
ENSHCOG00000008016	-	77	87.234	ENSNBRG00000008134	-	76	87.234	Neolamprologus_brichardi
ENSHCOG00000008016	-	77	81.250	ENSNBRG00000019981	-	77	83.333	Neolamprologus_brichardi
ENSHCOG00000008016	-	67	63.253	ENSOPRG00000004745	-	98	63.253	Ochotona_princeps
ENSHCOG00000008016	-	79	79.327	ENSONIG00000004857	-	80	80.976	Oreochromis_niloticus
ENSHCOG00000008016	-	54	62.857	ENSOANG00000007320	-	54	81.111	Ornithorhynchus_anatinus
ENSHCOG00000008016	-	69	49.412	ENSOCUG00000026856	-	97	51.163	Oryctolagus_cuniculus
ENSHCOG00000008016	-	77	83.756	ENSORLG00000005314	-	76	84.264	Oryzias_latipes
ENSHCOG00000008016	-	77	83.756	ENSORLG00015015497	-	76	84.264	Oryzias_latipes_hsok
ENSHCOG00000008016	-	77	82.178	ENSOMEG00000017711	-	76	82.673	Oryzias_melastigma
ENSHCOG00000008016	-	77	80.102	ENSPLAG00000019553	-	92	81.081	Poecilia_latipinna
ENSHCOG00000008016	-	72	81.768	ENSPLAG00000019613	-	71	82.873	Poecilia_latipinna
ENSHCOG00000008016	-	79	81.281	ENSPREG00000016792	-	79	81.500	Poecilia_reticulata
ENSHCOG00000008016	-	77	80.882	ENSPNYG00000020651	-	77	81.373	Pundamilia_nyererei
ENSHCOG00000008016	-	77	81.250	ENSPNYG00000017115	-	77	83.333	Pundamilia_nyererei
ENSHCOG00000008016	-	84	82.938	ENSSFOG00015004989	-	71	83.333	Scleropages_formosus
ENSHCOG00000008016	-	79	80.214	ENSSDUG00000003887	-	80	78.972	Seriola_dumerili
ENSHCOG00000008016	-	77	81.579	ENSTRUG00000017058	-	79	83.158	Takifugu_rubripes
ENSHCOG00000008016	-	77	78.010	ENSTNIG00000009993	-	79	80.105	Tetraodon_nigroviridis
ENSHCOG00000008016	-	77	80.102	ENSXCOG00000009643	-	77	82.540	Xiphophorus_couchianus
ENSHCOG00000008016	-	79	86.458	ENSXCOG00000017888	-	78	86.243	Xiphophorus_couchianus
ENSHCOG00000008016	-	79	80.882	ENSXMAG00000010797	-	80	81.095	Xiphophorus_maculatus