EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSHCOG00000008288 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
1145 bases
Position
chrKV879711.1:823065-824209
Accession
109518803
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000006480LSMPF01423.228.4e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000003615-180XM_019874891ENSHCOP0000000648059 (aa)XP_019730450-
Gene Model
Click here to download ENSHCOG00000008288's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008288's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000008288lsm57691.111ENSG00000106355LSM57391.111Homo_sapiens
ENSHCOG00000008288lsm510060.440ENSAPOG00000020779LSM510060.440Acanthochromis_polyacanthus
ENSHCOG00000008288lsm57693.333ENSAPOG00000011743LSM57393.333Acanthochromis_polyacanthus
ENSHCOG00000008288lsm510059.341ENSAMEG00000006700LSM510059.341Ailuropoda_melanoleuca
ENSHCOG00000008288lsm59396.364ENSACIG00000019185lsm59896.364Amphilophus_citrinellus
ENSHCOG00000008288lsm510060.440ENSAOCG00000001636lsm510060.440Amphiprion_ocellaris
ENSHCOG00000008288lsm510060.440ENSAPEG00000008151lsm510060.440Amphiprion_percula
ENSHCOG00000008288lsm57693.333ENSAPEG00000008201lsm57393.333Amphiprion_percula
ENSHCOG00000008288lsm510094.915ENSATEG00000020470lsm510094.915Anabas_testudineus
ENSHCOG00000008288lsm57390.698ENSAPLG00000008171LSM55890.698Anas_platyrhynchos
ENSHCOG00000008288lsm59856.667ENSANAG00000024192-9456.667Aotus_nancymaae
ENSHCOG00000008288lsm510060.440ENSANAG00000034409-10060.440Aotus_nancymaae
ENSHCOG00000008288lsm510059.494ENSANAG00000037758-10059.494Aotus_nancymaae
ENSHCOG00000008288lsm59359.770ENSACLG00000012891lsm59959.770Astatotilapia_calliptera
ENSHCOG00000008288lsm510058.511ENSAMXG00000035543lsm510058.511Astyanax_mexicanus
ENSHCOG00000008288lsm510059.341ENSBTAG00000002332LSM510059.341Bos_taurus
ENSHCOG00000008288lsm510045.055WBGene00003079lsm-510045.055Caenorhabditis_elegans
ENSHCOG00000008288lsm510059.341ENSCJAG00000047379LSM55759.341Callithrix_jacchus
ENSHCOG00000008288lsm59854.444ENSCJAG00000005678-10054.444Callithrix_jacchus
ENSHCOG00000008288lsm510058.242ENSCAFG00000019261-10058.242Canis_familiaris
ENSHCOG00000008288lsm510059.341ENSCAFG00020004946LSM510059.341Canis_lupus_dingo
ENSHCOG00000008288lsm57144.595ENSCHIG00000021428-9546.591Capra_hircus
ENSHCOG00000008288lsm510059.341ENSCHIG00000024539LSM510059.341Capra_hircus
ENSHCOG00000008288lsm510057.143ENSCHIG00000004079-10057.143Capra_hircus
ENSHCOG00000008288lsm510058.333ENSTSYG00000026530-9158.333Carlito_syrichta
ENSHCOG00000008288lsm510045.333ENSTSYG00000036637-10045.333Carlito_syrichta
ENSHCOG00000008288lsm510060.000ENSTSYG00000028728-10060.000Carlito_syrichta
ENSHCOG00000008288lsm510059.341ENSTSYG00000006449-10059.341Carlito_syrichta
ENSHCOG00000008288lsm57680.000ENSCAPG00000006980LSM56080.000Cavia_aperea
ENSHCOG00000008288lsm510093.220ENSCPOG00000036386LSM510093.220Cavia_porcellus
ENSHCOG00000008288lsm510062.025ENSCCAG00000032792-10062.025Cebus_capucinus
ENSHCOG00000008288lsm510059.341ENSCCAG00000000821-10059.341Cebus_capucinus
ENSHCOG00000008288lsm510057.143ENSCCAG00000032123-10057.143Cebus_capucinus
ENSHCOG00000008288lsm510057.143ENSCCAG00000037334-10057.143Cebus_capucinus
ENSHCOG00000008288lsm510059.341ENSCCAG00000037808-10059.341Cebus_capucinus
ENSHCOG00000008288lsm59850.000ENSCATG00000014790-10050.000Cercocebus_atys
ENSHCOG00000008288lsm57691.111ENSCATG00000040218LSM57391.111Cercocebus_atys
ENSHCOG00000008288lsm510052.222ENSCLAG00000005062-9052.222Chinchilla_lanigera
ENSHCOG00000008288lsm510093.220ENSCLAG00000000202LSM510093.220Chinchilla_lanigera
ENSHCOG00000008288lsm57352.000ENSCHOG00000005335LSM59952.000Choloepus_hoffmanni
ENSHCOG00000008288lsm510059.341ENSCPBG00000013685LSM510059.341Chrysemys_picta_bellii
ENSHCOG00000008288lsm59253.488ENSCING00000020625-9753.488Ciona_intestinalis
ENSHCOG00000008288lsm59253.488ENSCSAVG00000001439-9853.488Ciona_savignyi
ENSHCOG00000008288lsm57691.111ENSCANG00000039909LSM57391.111Colobus_angolensis_palliatus
ENSHCOG00000008288lsm510093.220ENSCGRG00001015461Lsm510093.220Cricetulus_griseus_chok1gshd
ENSHCOG00000008288lsm57691.111ENSCGRG00000007677Lsm56091.111Cricetulus_griseus_crigri
ENSHCOG00000008288lsm510093.220ENSCSEG00000015286lsm510093.220Cynoglossus_semilaevis
ENSHCOG00000008288lsm57693.333ENSCVAG00000004262lsm510060.440Cyprinodon_variegatus
ENSHCOG00000008288lsm57693.333ENSDARG00000071573lsm57393.333Danio_rerio
ENSHCOG00000008288lsm59352.874ENSDNOG00000049495-9652.874Dasypus_novemcinctus
ENSHCOG00000008288lsm510059.341ENSDNOG00000034958LSM510059.341Dasypus_novemcinctus
ENSHCOG00000008288lsm510093.220ENSDORG00000009422Lsm510093.220Dipodomys_ordii
ENSHCOG00000008288lsm510053.659ENSETEG00000010651-10053.659Echinops_telfairi
ENSHCOG00000008288lsm59850.000ENSETEG00000001469-9950.000Echinops_telfairi
ENSHCOG00000008288lsm55888.235ENSETEG00000016074-5288.235Echinops_telfairi
ENSHCOG00000008288lsm510059.341ENSETEG00000018068LSM510059.341Echinops_telfairi
ENSHCOG00000008288lsm57665.306ENSETEG00000000777-9948.780Echinops_telfairi
ENSHCOG00000008288lsm510056.044ENSEBUG00000008540lsm510056.044Eptatretus_burgeri
ENSHCOG00000008288lsm510059.341ENSEASG00005003500LSM510059.341Equus_asinus_asinus
ENSHCOG00000008288lsm510054.217ENSECAG00000018445LSM510054.217Equus_caballus
ENSHCOG00000008288lsm57684.444ENSEEUG00000004102LSM57584.444Erinaceus_europaeus
ENSHCOG00000008288lsm510060.440ENSELUG00000007792lsm510060.440Esox_lucius
ENSHCOG00000008288lsm510059.341ENSFCAG00000000230LSM510059.341Felis_catus
ENSHCOG00000008288lsm57691.111ENSFALG00000001892LSM55491.111Ficedula_albicollis
ENSHCOG00000008288lsm510093.220ENSFDAG00000008767LSM510093.220Fukomys_damarensis
ENSHCOG00000008288lsm58177.083ENSFHEG00000004011lsm55577.083Fundulus_heteroclitus
ENSHCOG00000008288lsm59860.000ENSGMOG00000018235lsm510060.000Gadus_morhua
ENSHCOG00000008288lsm510059.341ENSGALG00000041625LSM510059.341Gallus_gallus
ENSHCOG00000008288lsm57693.333ENSGAFG00000016824lsm57393.333Gambusia_affinis
ENSHCOG00000008288lsm510059.341ENSGACG00000005528lsm510059.341Gasterosteus_aculeatus
ENSHCOG00000008288lsm510059.341ENSGAGG00000015593LSM510059.341Gopherus_agassizii
ENSHCOG00000008288lsm510059.341ENSGGOG00000043469LSM510059.341Gorilla_gorilla
ENSHCOG00000008288lsm59359.770ENSHBUG00000013773lsm59959.770Haplochromis_burtoni
ENSHCOG00000008288lsm510093.220ENSHGLG00000011765LSM510093.220Heterocephalus_glaber_female
ENSHCOG00000008288lsm510088.136ENSHGLG00100015610LSM510088.136Heterocephalus_glaber_male
ENSHCOG00000008288lsm510059.341ENSIPUG00000021095LSM510059.341Ictalurus_punctatus
ENSHCOG00000008288lsm510093.220ENSSTOG00000012662LSM510093.220Ictidomys_tridecemlineatus
ENSHCOG00000008288lsm57677.778ENSSTOG00000033886-5177.778Ictidomys_tridecemlineatus
ENSHCOG00000008288lsm510057.895ENSJJAG00000016144-9257.895Jaculus_jaculus
ENSHCOG00000008288lsm510089.831ENSJJAG00000012145-10089.831Jaculus_jaculus
ENSHCOG00000008288lsm58048.101ENSJJAG00000004475-10048.101Jaculus_jaculus
ENSHCOG00000008288lsm510061.538ENSKMAG00000021861lsm510061.538Kryptolebias_marmoratus
ENSHCOG00000008288lsm510051.648ENSLBEG00000009235LSM57051.648Labrus_bergylta
ENSHCOG00000008288lsm510060.440ENSLACG00000022448LSM510060.440Latimeria_chalumnae
ENSHCOG00000008288lsm510060.440ENSLOCG00000012903lsm510060.440Lepisosteus_oculatus
ENSHCOG00000008288lsm510059.494ENSLAFG00000027938-10059.494Loxodonta_africana
ENSHCOG00000008288lsm510059.341ENSLAFG00000029579LSM510059.341Loxodonta_africana
ENSHCOG00000008288lsm510059.341ENSMFAG00000038508LSM510059.341Macaca_fascicularis
ENSHCOG00000008288lsm510057.143ENSMFAG00000030152-10057.143Macaca_fascicularis
ENSHCOG00000008288lsm510057.143ENSMMUG00000030131-10057.143Macaca_mulatta
ENSHCOG00000008288lsm59851.111ENSMMUG00000039822-10051.111Macaca_mulatta
ENSHCOG00000008288lsm510057.143ENSMNEG00000037935-10057.143Macaca_nemestrina
ENSHCOG00000008288lsm57691.111ENSMNEG00000015331LSM57391.111Macaca_nemestrina
ENSHCOG00000008288lsm59749.438ENSMLEG00000034037-10049.438Mandrillus_leucophaeus
ENSHCOG00000008288lsm510059.341ENSMLEG00000024945LSM510059.341Mandrillus_leucophaeus
ENSHCOG00000008288lsm510058.242ENSMAMG00000012869lsm510058.242Mastacembelus_armatus
ENSHCOG00000008288lsm59359.770ENSMZEG00005019554lsm59959.770Maylandia_zebra
ENSHCOG00000008288lsm510059.341ENSMGAG00000012117LSM510059.341Meleagris_gallopavo
ENSHCOG00000008288lsm510093.220ENSMAUG00000012222Lsm510093.220Mesocricetus_auratus
ENSHCOG00000008288lsm510058.242ENSMAUG00000008132-10058.242Mesocricetus_auratus
ENSHCOG00000008288lsm510059.341ENSMICG00000005353LSM510059.341Microcebus_murinus
ENSHCOG00000008288lsm59870.270ENSMICG00000033928-9670.270Microcebus_murinus
ENSHCOG00000008288lsm510093.220ENSMOCG00000012018Lsm510093.220Microtus_ochrogaster
ENSHCOG00000008288lsm57693.333ENSMMOG00000004026lsm55293.333Mola_mola
ENSHCOG00000008288lsm57691.111ENSMODG00000013274-7391.111Monodelphis_domestica
ENSHCOG00000008288lsm57686.667ENSMALG00000010343lsm57386.667Monopterus_albus
ENSHCOG00000008288lsm510093.220MGP_CAROLIEiJ_G0028421Lsm510093.220Mus_caroli
ENSHCOG00000008288lsm510093.220ENSMUSG00000091625Lsm510093.220Mus_musculus
ENSHCOG00000008288lsm510093.220MGP_PahariEiJ_G0022171Lsm510093.220Mus_pahari
ENSHCOG00000008288lsm510093.220MGP_SPRETEiJ_G0029423Lsm510093.220Mus_spretus
ENSHCOG00000008288lsm510059.341ENSMLUG00000017028LSM510059.341Myotis_lucifugus
ENSHCOG00000008288lsm59861.250ENSNGAG00000022569-9661.250Nannospalax_galili
ENSHCOG00000008288lsm510059.770ENSNGAG00000017707-10059.770Nannospalax_galili
ENSHCOG00000008288lsm510093.220ENSNGAG00000024142Lsm510093.220Nannospalax_galili
ENSHCOG00000008288lsm57693.333ENSNBRG00000011386lsm56093.333Neolamprologus_brichardi
ENSHCOG00000008288lsm510059.341ENSNLEG00000015268LSM510059.341Nomascus_leucogenys
ENSHCOG00000008288lsm57691.111ENSOPRG00000002443LSM56091.111Ochotona_princeps
ENSHCOG00000008288lsm510059.341ENSODEG00000019072-10059.341Octodon_degus
ENSHCOG00000008288lsm510093.220ENSODEG00000008258-10093.220Octodon_degus
ENSHCOG00000008288lsm56951.220ENSOANG00000014540-5551.220Ornithorhynchus_anatinus
ENSHCOG00000008288lsm510059.341ENSOCUG00000029043LSM510059.341Oryctolagus_cuniculus
ENSHCOG00000008288lsm510059.341ENSORLG00000027725lsm55859.341Oryzias_latipes
ENSHCOG00000008288lsm57691.111ENSORLG00020003019lsm58654.023Oryzias_latipes_hni
ENSHCOG00000008288lsm510059.341ENSORLG00015003338lsm510059.341Oryzias_latipes_hsok
ENSHCOG00000008288lsm57691.111ENSOMEG00000001078lsm510058.242Oryzias_melastigma
ENSHCOG00000008288lsm510059.341ENSOGAG00000013892LSM510059.341Otolemur_garnettii
ENSHCOG00000008288lsm510059.341ENSOARG00000006944LSM510059.341Ovis_aries
ENSHCOG00000008288lsm510059.341ENSPPAG00000003697-10059.341Pan_paniscus
ENSHCOG00000008288lsm510059.341ENSPPRG00000002550LSM510059.341Panthera_pardus
ENSHCOG00000008288lsm510059.341ENSPTIG00000015604LSM510059.341Panthera_tigris_altaica
ENSHCOG00000008288lsm510059.341ENSPTRG00000019057LSM510059.341Pan_troglodytes
ENSHCOG00000008288lsm510047.126ENSPTRG00000049488-10051.724Pan_troglodytes
ENSHCOG00000008288lsm59851.111ENSPANG00000032538-10051.111Papio_anubis
ENSHCOG00000008288lsm510059.341ENSPANG00000032179-10059.341Papio_anubis
ENSHCOG00000008288lsm510056.044ENSPANG00000033477-10056.044Papio_anubis
ENSHCOG00000008288lsm510061.538ENSPKIG00000011910lsm510061.538Paramormyrops_kingsleyae
ENSHCOG00000008288lsm57390.698ENSPSIG00000014796LSM55890.698Pelodiscus_sinensis
ENSHCOG00000008288lsm57693.333ENSPMGG00000011699lsm57393.333Periophthalmus_magnuspinnatus
ENSHCOG00000008288lsm510043.902ENSPEMG00000022375-10043.902Peromyscus_maniculatus_bairdii
ENSHCOG00000008288lsm510060.440ENSPFOG00000001433lsm510060.440Poecilia_formosa
ENSHCOG00000008288lsm510060.440ENSPLAG00000009665lsm510060.440Poecilia_latipinna
ENSHCOG00000008288lsm510060.440ENSPMEG00000022265lsm510060.440Poecilia_mexicana
ENSHCOG00000008288lsm57693.333ENSPREG00000022452lsm57393.333Poecilia_reticulata
ENSHCOG00000008288lsm510057.143ENSPPYG00000017661LSM510057.143Pongo_abelii
ENSHCOG00000008288lsm58355.556ENSPCAG00000013740LSM510055.556Procavia_capensis
ENSHCOG00000008288lsm510059.341ENSPVAG00000009786LSM510059.341Pteropus_vampyrus
ENSHCOG00000008288lsm59359.770ENSPNYG00000022236lsm59959.770Pundamilia_nyererei
ENSHCOG00000008288lsm510059.341ENSPNAG00000001887lsm510059.341Pygocentrus_nattereri
ENSHCOG00000008288lsm510059.341ENSRNOG00000042126Lsm510059.341Rattus_norvegicus
ENSHCOG00000008288lsm510057.609ENSRNOG00000027305AABR07065089.110057.609Rattus_norvegicus
ENSHCOG00000008288lsm57691.111ENSRBIG00000027803-7391.111Rhinopithecus_bieti
ENSHCOG00000008288lsm510059.341ENSRBIG00000030340-10059.341Rhinopithecus_bieti
ENSHCOG00000008288lsm510059.341ENSRBIG00000030714-10059.341Rhinopithecus_bieti
ENSHCOG00000008288lsm510058.242ENSRBIG00000024431-10058.242Rhinopithecus_bieti
ENSHCOG00000008288lsm510059.341ENSRROG00000004655-10059.341Rhinopithecus_roxellana
ENSHCOG00000008288lsm510059.341ENSRROG00000023884-10059.341Rhinopithecus_roxellana
ENSHCOG00000008288lsm57691.111ENSRROG00000042782-7391.111Rhinopithecus_roxellana
ENSHCOG00000008288lsm510059.494ENSSBOG00000034794-10059.494Saimiri_boliviensis_boliviensis
ENSHCOG00000008288lsm510057.143ENSSBOG00000019124-10057.143Saimiri_boliviensis_boliviensis
ENSHCOG00000008288lsm510059.341ENSSBOG00000012312LSM510059.341Saimiri_boliviensis_boliviensis
ENSHCOG00000008288lsm510061.538ENSSFOG00015010099lsm510061.538Scleropages_formosus
ENSHCOG00000008288lsm510093.220ENSSMAG00000007895lsm510093.220Scophthalmus_maximus
ENSHCOG00000008288lsm57693.333ENSSDUG00000010762lsm57393.333Seriola_dumerili
ENSHCOG00000008288lsm510096.610ENSSLDG00000025242lsm510096.610Seriola_lalandi_dorsalis
ENSHCOG00000008288lsm57691.111ENSSPUG00000002690LSM57391.111Sphenodon_punctatus
ENSHCOG00000008288lsm510094.915ENSSPAG00000005435lsm510094.915Stegastes_partitus
ENSHCOG00000008288lsm57691.111ENSSSCG00000026064-10059.341Sus_scrofa
ENSHCOG00000008288lsm510057.143ENSTGUG00000017539LSM510057.143Taeniopygia_guttata
ENSHCOG00000008288lsm57651.220ENSTRUG00000017749lsm56451.220Takifugu_rubripes
ENSHCOG00000008288lsm59260.465ENSTNIG00000008695lsm59860.465Tetraodon_nigroviridis
ENSHCOG00000008288lsm510059.341ENSTBEG00000004876LSM510059.341Tupaia_belangeri
ENSHCOG00000008288lsm510059.341ENSTTRG00000004237LSM510059.341Tursiops_truncatus
ENSHCOG00000008288lsm59858.889ENSUMAG00000002625LSM56558.889Ursus_maritimus
ENSHCOG00000008288lsm510059.341ENSVPAG00000009985LSM510059.341Vicugna_pacos
ENSHCOG00000008288lsm510059.341ENSVVUG00000021311LSM510059.341Vulpes_vulpes
ENSHCOG00000008288lsm58552.439ENSXETG00000026465lsm510052.439Xenopus_tropicalis
ENSHCOG00000008288lsm57693.333ENSXCOG00000015348lsm57393.333Xiphophorus_couchianus
ENSHCOG00000008288lsm510060.440ENSXMAG00000029988lsm510060.440Xiphophorus_maculatus

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