EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000008656 (Gene tree)
Gene ID: 109524416
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 2716 bases
Position: chrKV880218.1:2972710-2975425
Accession: 109524416
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000021635	Gar1	PF04410.14	1.4e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000003112	-	663	XM_019884292	ENSHCOP00000021635	220 (aa)	XP_019739851	-

Gene Model

Click here to download ENSHCOG00000008656's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008656's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008656	gar1	70	78.767	ENSACAG00000010031	GAR1	50	89.623	Anolis_carolinensis
ENSHCOG00000008656	gar1	78	75.893	ENSCHIG00000011049	-	54	79.439	Capra_hircus
ENSHCOG00000008656	gar1	50	94.495	ENSFHEG00000008068	gar1	50	94.444	Fundulus_heteroclitus
ENSHCOG00000008656	gar1	58	89.844	ENSHBUG00000023860	gar1	50	94.898	Haplochromis_burtoni
ENSHCOG00000008656	gar1	50	93.578	ENSIPUG00000003194	gar1	51	93.519	Ictalurus_punctatus
ENSHCOG00000008656	gar1	50	89.908	ENSSTOG00000005577	GAR1	71	94.545	Ictidomys_tridecemlineatus
ENSHCOG00000008656	gar1	50	93.578	ENSKMAG00000010402	gar1	51	93.519	Kryptolebias_marmoratus
ENSHCOG00000008656	gar1	95	72.727	ENSLACG00000003306	GAR1	64	88.679	Latimeria_chalumnae
ENSHCOG00000008656	gar1	52	93.043	ENSPMEG00000009320	gar1	52	94.444	Poecilia_mexicana
ENSHCOG00000008656	gar1	64	90.071	ENSPNYG00000020926	gar1	71	80.000	Pundamilia_nyererei
ENSHCOG00000008656	gar1	50	93.578	ENSPNAG00000019686	gar1	68	77.381	Pygocentrus_nattereri
ENSHCOG00000008656	gar1	66	90.345	ENSSLDG00000023264	gar1	51	96.296	Seriola_lalandi_dorsalis
ENSHCOG00000008656	gar1	69	78.146	ENSSPUG00000008707	GAR1	59	91.509	Sphenodon_punctatus