EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000008683 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 10149 bases
Position: chrKV880534.1:1528847-1538995
Accession: 109511437
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000021655	RNA_bind	PF08675.11	2.7e-32	1	1
ENSHCOP00000021655	CAF1	PF04857.20	7e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000003054	-	1725	XM_019862550	ENSHCOP00000021655	574 (aa)	XP_019718109	-

Gene Model

Click here to download ENSHCOG00000008683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008683's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008683	parn	91	73.913	ENSG00000140694	PARN	99	70.357	Homo_sapiens
ENSHCOG00000008683	parn	91	72.642	ENSAMEG00000011208	PARN	82	72.642	Ailuropoda_melanoleuca
ENSHCOG00000008683	parn	95	79.964	ENSACIG00000000619	parn	86	79.354	Amphilophus_citrinellus
ENSHCOG00000008683	parn	99	81.076	ENSAOCG00000003465	parn	83	81.076	Amphiprion_ocellaris
ENSHCOG00000008683	parn	90	80.153	ENSAPEG00000010661	parn	100	80.153	Amphiprion_percula
ENSHCOG00000008683	parn	99	81.424	ENSATEG00000004661	parn	83	81.424	Anabas_testudineus
ENSHCOG00000008683	parn	98	69.474	ENSAPLG00000013914	PARN	88	69.825	Anas_platyrhynchos
ENSHCOG00000008683	parn	98	69.702	ENSACAG00000004973	PARN	87	69.702	Anolis_carolinensis
ENSHCOG00000008683	parn	91	73.724	ENSANAG00000031516	PARN	80	84.615	Aotus_nancymaae
ENSHCOG00000008683	parn	94	84.066	ENSACLG00000004742	parn	80	84.066	Astatotilapia_calliptera
ENSHCOG00000008683	parn	92	78.612	ENSAMXG00000012390	parn	86	75.188	Astyanax_mexicanus
ENSHCOG00000008683	parn	91	71.537	ENSBTAG00000018097	PARN	84	69.892	Bos_taurus
ENSHCOG00000008683	parn	91	73.913	ENSCJAG00000015866	PARN	80	84.615	Callithrix_jacchus
ENSHCOG00000008683	parn	91	72.779	ENSCAFG00000018795	PARN	82	72.779	Canis_familiaris
ENSHCOG00000008683	parn	91	73.157	ENSCAFG00020024126	PARN	82	73.157	Canis_lupus_dingo
ENSHCOG00000008683	parn	95	70.736	ENSCHIG00000018143	PARN	87	70.736	Capra_hircus
ENSHCOG00000008683	parn	80	47.689	ENSCAPG00000007984	PARN	78	47.689	Cavia_aperea
ENSHCOG00000008683	parn	91	72.779	ENSCPOG00000002263	PARN	82	72.779	Cavia_porcellus
ENSHCOG00000008683	parn	91	73.724	ENSCCAG00000030367	PARN	80	84.615	Cebus_capucinus
ENSHCOG00000008683	parn	91	73.913	ENSCATG00000041368	PARN	91	84.615	Cercocebus_atys
ENSHCOG00000008683	parn	93	70.536	ENSCLAG00000015406	PARN	87	70.035	Chinchilla_lanigera
ENSHCOG00000008683	parn	91	74.102	ENSCSAG00000008142	PARN	82	74.102	Chlorocebus_sabaeus
ENSHCOG00000008683	parn	93	54.286	ENSCHOG00000007014	PARN	88	54.286	Choloepus_hoffmanni
ENSHCOG00000008683	parn	87	68.824	ENSCPBG00000006609	PARN	87	68.824	Chrysemys_picta_bellii
ENSHCOG00000008683	parn	87	41.825	ENSCING00000010142	-	98	41.825	Ciona_intestinalis
ENSHCOG00000008683	parn	91	62.362	ENSCANG00000028849	-	68	84.615	Colobus_angolensis_palliatus
ENSHCOG00000008683	parn	91	72.401	ENSCGRG00001012096	Parn	83	72.401	Cricetulus_griseus_chok1gshd
ENSHCOG00000008683	parn	91	72.401	ENSCGRG00000004939	Parn	83	72.401	Cricetulus_griseus_crigri
ENSHCOG00000008683	parn	94	80.256	ENSCSEG00000002064	parn	96	76.995	Cynoglossus_semilaevis
ENSHCOG00000008683	parn	95	81.455	ENSCVAG00000014848	parn	80	81.455	Cyprinodon_variegatus
ENSHCOG00000008683	parn	98	69.056	ENSDARG00000102634	parn	87	69.056	Danio_rerio
ENSHCOG00000008683	parn	91	72.968	ENSDNOG00000000833	PARN	92	72.968	Dasypus_novemcinctus
ENSHCOG00000008683	parn	67	74.783	ENSETEG00000014828	-	63	74.783	Echinops_telfairi
ENSHCOG00000008683	parn	91	72.968	ENSEASG00005011400	PARN	82	72.968	Equus_asinus_asinus
ENSHCOG00000008683	parn	91	72.590	ENSECAG00000017792	PARN	82	72.590	Equus_caballus
ENSHCOG00000008683	parn	76	66.827	ENSEEUG00000010370	PARN	68	66.827	Erinaceus_europaeus
ENSHCOG00000008683	parn	93	78.165	ENSELUG00000013139	parn	72	78.165	Esox_lucius
ENSHCOG00000008683	parn	91	73.157	ENSFCAG00000044961	PARN	82	73.157	Felis_catus
ENSHCOG00000008683	parn	97	69.858	ENSFALG00000003911	PARN	86	70.213	Ficedula_albicollis
ENSHCOG00000008683	parn	91	73.157	ENSFDAG00000009234	PARN	86	69.908	Fukomys_damarensis
ENSHCOG00000008683	parn	95	73.455	ENSFHEG00000013738	parn	81	88.462	Fundulus_heteroclitus
ENSHCOG00000008683	parn	94	78.125	ENSGMOG00000003231	parn	99	78.125	Gadus_morhua
ENSHCOG00000008683	parn	97	70.390	ENSGALG00000003091	PARN	87	70.390	Gallus_gallus
ENSHCOG00000008683	parn	95	79.603	ENSGAFG00000011061	parn	81	79.603	Gambusia_affinis
ENSHCOG00000008683	parn	94	80.331	ENSGACG00000019501	parn	87	80.331	Gasterosteus_aculeatus
ENSHCOG00000008683	parn	51	69.416	ENSGAGG00000023281	PARN	72	69.416	Gopherus_agassizii
ENSHCOG00000008683	parn	91	74.669	ENSGGOG00000025224	PARN	80	84.615	Gorilla_gorilla
ENSHCOG00000008683	parn	94	84.249	ENSHBUG00000017906	parn	99	77.909	Haplochromis_burtoni
ENSHCOG00000008683	parn	97	70.390	ENSHGLG00000010886	PARN	87	70.390	Heterocephalus_glaber_female
ENSHCOG00000008683	parn	97	70.390	ENSHGLG00100014659	PARN	87	70.390	Heterocephalus_glaber_male
ENSHCOG00000008683	parn	93	67.416	ENSIPUG00000012401	parn	80	67.416	Ictalurus_punctatus
ENSHCOG00000008683	parn	97	69.858	ENSSTOG00000007519	PARN	88	69.858	Ictidomys_tridecemlineatus
ENSHCOG00000008683	parn	93	70.534	ENSJJAG00000023049	Parn	86	70.534	Jaculus_jaculus
ENSHCOG00000008683	parn	94	81.170	ENSKMAG00000009462	parn	80	81.170	Kryptolebias_marmoratus
ENSHCOG00000008683	parn	99	79.514	ENSLBEG00000009167	parn	89	79.514	Labrus_bergylta
ENSHCOG00000008683	parn	89	68.893	ENSLACG00000004207	PARN	99	70.546	Latimeria_chalumnae
ENSHCOG00000008683	parn	94	76.503	ENSLOCG00000000715	parn	79	76.503	Lepisosteus_oculatus
ENSHCOG00000008683	parn	91	73.724	ENSLAFG00000015036	PARN	83	73.724	Loxodonta_africana
ENSHCOG00000008683	parn	91	70.132	ENSMFAG00000044852	PARN	81	72.842	Macaca_fascicularis
ENSHCOG00000008683	parn	91	74.102	ENSMMUG00000018849	PARN	82	74.102	Macaca_mulatta
ENSHCOG00000008683	parn	91	74.102	ENSMNEG00000045108	PARN	82	74.102	Macaca_nemestrina
ENSHCOG00000008683	parn	91	74.102	ENSMLEG00000031743	PARN	82	74.102	Mandrillus_leucophaeus
ENSHCOG00000008683	parn	94	84.066	ENSMAMG00000006939	parn	79	84.066	Mastacembelus_armatus
ENSHCOG00000008683	parn	94	84.249	ENSMZEG00005013590	parn	99	77.797	Maylandia_zebra
ENSHCOG00000008683	parn	96	67.979	ENSMGAG00000001004	PARN	86	67.979	Meleagris_gallopavo
ENSHCOG00000008683	parn	91	65.799	ENSMAUG00000008025	Parn	83	65.799	Mesocricetus_auratus
ENSHCOG00000008683	parn	93	72.727	ENSMICG00000016053	PARN	80	82.692	Microcebus_murinus
ENSHCOG00000008683	parn	84	74.385	ENSMOCG00000022211	Parn	99	73.975	Microtus_ochrogaster
ENSHCOG00000008683	parn	99	74.503	ENSMMOG00000011333	parn	99	74.503	Mola_mola
ENSHCOG00000008683	parn	84	75.306	ENSMODG00000004915	PARN	98	75.306	Monodelphis_domestica
ENSHCOG00000008683	parn	99	81.100	ENSMALG00000019426	parn	99	81.100	Monopterus_albus
ENSHCOG00000008683	parn	91	71.834	MGP_CAROLIEiJ_G0020466	Parn	83	71.834	Mus_caroli
ENSHCOG00000008683	parn	54	30.124	ENSMUSG00000073460	Pnldc1	95	30.124	Mus_musculus
ENSHCOG00000008683	parn	91	71.834	ENSMUSG00000022685	Parn	91	80.000	Mus_musculus
ENSHCOG00000008683	parn	91	71.834	MGP_PahariEiJ_G0016172	Parn	83	71.834	Mus_pahari
ENSHCOG00000008683	parn	94	69.355	MGP_SPRETEiJ_G0021361	Parn	88	69.355	Mus_spretus
ENSHCOG00000008683	parn	91	73.157	ENSMPUG00000014464	PARN	82	73.157	Mustela_putorius_furo
ENSHCOG00000008683	parn	83	72.951	ENSMLUG00000005414	PARN	99	72.951	Myotis_lucifugus
ENSHCOG00000008683	parn	99	77.778	ENSNBRG00000006805	parn	99	77.778	Neolamprologus_brichardi
ENSHCOG00000008683	parn	91	74.102	ENSNLEG00000010241	PARN	80	84.615	Nomascus_leucogenys
ENSHCOG00000008683	parn	80	65.833	ENSMEUG00000008178	-	74	65.833	Notamacropus_eugenii
ENSHCOG00000008683	parn	90	68.251	ENSOPRG00000012187	PARN	83	68.251	Ochotona_princeps
ENSHCOG00000008683	parn	91	66.541	ENSODEG00000001617	PARN	84	66.541	Octodon_degus
ENSHCOG00000008683	parn	94	84.249	ENSONIG00000000151	parn	87	79.545	Oreochromis_niloticus
ENSHCOG00000008683	parn	91	74.102	ENSOCUG00000000322	PARN	83	74.102	Oryctolagus_cuniculus
ENSHCOG00000008683	parn	94	80.952	ENSORLG00020010313	parn	81	80.952	Oryzias_latipes_hni
ENSHCOG00000008683	parn	94	80.586	ENSORLG00015000300	parn	81	80.586	Oryzias_latipes_hsok
ENSHCOG00000008683	parn	96	79.391	ENSOMEG00000019555	parn	94	77.465	Oryzias_melastigma
ENSHCOG00000008683	parn	83	74.029	ENSOGAG00000014626	PARN	99	73.824	Otolemur_garnettii
ENSHCOG00000008683	parn	83	74.795	ENSOARG00000007574	PARN	99	74.795	Ovis_aries
ENSHCOG00000008683	parn	91	73.724	ENSPPAG00000031438	PARN	80	84.615	Pan_paniscus
ENSHCOG00000008683	parn	91	73.157	ENSPPRG00000018583	PARN	82	73.157	Panthera_pardus
ENSHCOG00000008683	parn	91	73.157	ENSPTIG00000012135	PARN	82	73.157	Panthera_tigris_altaica
ENSHCOG00000008683	parn	91	73.724	ENSPTRG00000007792	PARN	80	84.615	Pan_troglodytes
ENSHCOG00000008683	parn	91	71.645	ENSPANG00000020099	PARN	69	84.615	Papio_anubis
ENSHCOG00000008683	parn	94	75.551	ENSPKIG00000022807	parn	86	70.270	Paramormyrops_kingsleyae
ENSHCOG00000008683	parn	97	70.035	ENSPSIG00000014804	PARN	87	70.035	Pelodiscus_sinensis
ENSHCOG00000008683	parn	94	76.812	ENSPMGG00000014431	parn	76	77.596	Periophthalmus_magnuspinnatus
ENSHCOG00000008683	parn	92	69.259	ENSPEMG00000018439	Parn	85	69.259	Peromyscus_maniculatus_bairdii
ENSHCOG00000008683	parn	88	64.844	ENSPMAG00000003956	parn	97	64.844	Petromyzon_marinus
ENSHCOG00000008683	parn	72	65.802	ENSPCIG00000001259	PARN	80	84.615	Phascolarctos_cinereus
ENSHCOG00000008683	parn	95	80.182	ENSPFOG00000012823	parn	81	80.182	Poecilia_formosa
ENSHCOG00000008683	parn	95	80.364	ENSPLAG00000006395	parn	81	80.364	Poecilia_latipinna
ENSHCOG00000008683	parn	95	80.000	ENSPMEG00000007711	parn	81	80.000	Poecilia_mexicana
ENSHCOG00000008683	parn	95	79.566	ENSPREG00000000147	parn	81	79.566	Poecilia_reticulata
ENSHCOG00000008683	parn	91	74.011	ENSPPYG00000007123	PARN	82	74.011	Pongo_abelii
ENSHCOG00000008683	parn	86	63.583	ENSPCAG00000001741	PARN	82	64.370	Procavia_capensis
ENSHCOG00000008683	parn	93	70.130	ENSPCOG00000019292	PARN	80	82.692	Propithecus_coquereli
ENSHCOG00000008683	parn	91	70.265	ENSPVAG00000002547	PARN	83	70.265	Pteropus_vampyrus
ENSHCOG00000008683	parn	94	84.249	ENSPNYG00000006835	parn	99	76.370	Pundamilia_nyererei
ENSHCOG00000008683	parn	84	77.755	ENSPNAG00000018905	parn	80	77.755	Pygocentrus_nattereri
ENSHCOG00000008683	parn	92	70.980	ENSRNOG00000002912	Parn	96	79.592	Rattus_norvegicus
ENSHCOG00000008683	parn	91	72.023	ENSSBOG00000034726	PARN	82	72.023	Saimiri_boliviensis_boliviensis
ENSHCOG00000008683	parn	71	73.381	ENSSHAG00000008493	PARN	93	73.381	Sarcophilus_harrisii
ENSHCOG00000008683	parn	96	73.741	ENSSFOG00015014165	parn	89	73.481	Scleropages_formosus
ENSHCOG00000008683	parn	94	82.084	ENSSMAG00000000685	parn	99	70.962	Scophthalmus_maximus
ENSHCOG00000008683	parn	94	83.212	ENSSDUG00000014555	parn	80	83.577	Seriola_dumerili
ENSHCOG00000008683	parn	74	73.793	ENSSARG00000014339	PARN	75	73.793	Sorex_araneus
ENSHCOG00000008683	parn	51	31.104	ENSSPUG00000004627	PNLDC1	91	31.416	Sphenodon_punctatus
ENSHCOG00000008683	parn	97	71.201	ENSSPUG00000007719	PARN	87	71.201	Sphenodon_punctatus
ENSHCOG00000008683	parn	99	81.250	ENSSPAG00000007095	parn	99	72.295	Stegastes_partitus
ENSHCOG00000008683	parn	91	72.779	ENSSSCG00000007878	PARN	73	72.779	Sus_scrofa
ENSHCOG00000008683	parn	97	69.681	ENSTGUG00000004971	PARN	87	70.035	Taeniopygia_guttata
ENSHCOG00000008683	parn	94	80.616	ENSTNIG00000008252	parn	87	81.341	Tetraodon_nigroviridis
ENSHCOG00000008683	parn	82	60.168	ENSTBEG00000010407	PARN	81	60.168	Tupaia_belangeri
ENSHCOG00000008683	parn	83	73.922	ENSTTRG00000002843	PARN	77	73.922	Tursiops_truncatus
ENSHCOG00000008683	parn	75	65.446	ENSUAMG00000008283	PARN	90	65.446	Ursus_americanus
ENSHCOG00000008683	parn	91	73.346	ENSUMAG00000004527	PARN	82	73.346	Ursus_maritimus
ENSHCOG00000008683	parn	91	70.510	ENSVPAG00000008968	PARN	85	70.510	Vicugna_pacos
ENSHCOG00000008683	parn	91	73.157	ENSVVUG00000019509	PARN	82	73.157	Vulpes_vulpes
ENSHCOG00000008683	parn	91	71.536	ENSXETG00000010994	parn	99	71.863	Xenopus_tropicalis
ENSHCOG00000008683	parn	94	75.137	ENSXCOG00000015990	parn	92	75.137	Xiphophorus_couchianus
ENSHCOG00000008683	parn	95	79.455	ENSXMAG00000014783	parn	81	79.455	Xiphophorus_maculatus