EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000008687 (Gene tree)
Gene ID: 109532529
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 20018 bases
Position: chrKV880453.1:136020-156037
Accession: 109532529
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000006819	MMR_HSR1	PF01926.23	1.2e-08	1	1
ENSHCOP00000021664	MMR_HSR1	PF01926.23	1.3e-08	1	1
ENSHCOP00000006821	MMR_HSR1	PF01926.23	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000003026	-	4136	XM_019897384	ENSHCOP00000021664	492 (aa)	XP_019752943	UPI00094E1DB8
ENSHCOT00000003046	-	1356	-	ENSHCOP00000006819	451 (aa)	-	-
ENSHCOT00000003031	-	4100	XM_019897386	ENSHCOP00000006821	480 (aa)	XP_019752945	UPI00094E96C5

Gene Model

Click here to download ENSHCOG00000008687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008687's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000008687	srl	91	32.530	ENSHCOG00000017683	ehd2b	74	32.530
ENSHCOG00000008687	srl	82	33.512	ENSHCOG00000018418	ehd3	69	33.506
ENSHCOG00000008687	srl	65	35.836	ENSHCOG00000012768	-	53	35.836
ENSHCOG00000008687	srl	92	31.754	ENSHCOG00000021219	ehd4	74	31.754
ENSHCOG00000008687	srl	86	30.928	ENSHCOG00000006825	ehd1a	70	30.928
ENSHCOG00000008687	srl	98	74.505	ENSHCOG00000001012	SRL	50	74.505

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008687	srl	98	82.805	ENSG00000185739	SRL	99	83.607	Homo_sapiens
ENSHCOG00000008687	srl	99	96.652	ENSAPOG00000018093	srl	100	95.763	Acanthochromis_polyacanthus
ENSHCOG00000008687	srl	98	77.201	ENSAPOG00000012432	SRL	99	77.201	Acanthochromis_polyacanthus
ENSHCOG00000008687	srl	98	83.032	ENSAMEG00000010862	SRL	50	83.032	Ailuropoda_melanoleuca
ENSHCOG00000008687	srl	99	96.652	ENSACIG00000015799	srl	100	96.674	Amphilophus_citrinellus
ENSHCOG00000008687	srl	99	75.724	ENSACIG00000015419	SRL	100	75.724	Amphilophus_citrinellus
ENSHCOG00000008687	srl	98	77.252	ENSAOCG00000017049	SRL	100	75.652	Amphiprion_ocellaris
ENSHCOG00000008687	srl	96	97.235	ENSAOCG00000007574	srl	100	97.235	Amphiprion_ocellaris
ENSHCOG00000008687	srl	99	96.875	ENSAPEG00000006911	srl	100	95.975	Amphiprion_percula
ENSHCOG00000008687	srl	98	74.041	ENSAPEG00000006533	SRL	100	72.826	Amphiprion_percula
ENSHCOG00000008687	srl	99	75.162	ENSATEG00000009643	SRL	53	75.378	Anabas_testudineus
ENSHCOG00000008687	srl	99	97.098	ENSATEG00000024315	srl	100	96.186	Anabas_testudineus
ENSHCOG00000008687	srl	98	81.678	ENSACAG00000016380	SRL	90	80.691	Anolis_carolinensis
ENSHCOG00000008687	srl	99	74.026	ENSACLG00000024674	SRL	58	73.504	Astatotilapia_calliptera
ENSHCOG00000008687	srl	99	96.429	ENSACLG00000027685	srl	100	95.127	Astatotilapia_calliptera
ENSHCOG00000008687	srl	99	92.188	ENSAMXG00000018789	srl	93	90.612	Astyanax_mexicanus
ENSHCOG00000008687	srl	93	76.905	ENSAMXG00000038693	SRL	100	73.068	Astyanax_mexicanus
ENSHCOG00000008687	srl	98	84.127	ENSBTAG00000001078	SRL	58	82.237	Bos_taurus
ENSHCOG00000008687	srl	98	82.805	ENSCJAG00000019750	SRL	99	79.618	Callithrix_jacchus
ENSHCOG00000008687	srl	98	83.032	ENSCAFG00000019233	SRL	85	80.786	Canis_familiaris
ENSHCOG00000008687	srl	98	83.032	ENSCAFG00020025024	SRL	56	81.678	Canis_lupus_dingo
ENSHCOG00000008687	srl	98	84.127	ENSCHIG00000017927	SRL	57	82.637	Capra_hircus
ENSHCOG00000008687	srl	98	83.258	ENSTSYG00000007919	SRL	99	84.309	Carlito_syrichta
ENSHCOG00000008687	srl	98	83.032	ENSCPOG00000012643	SRL	99	80.000	Cavia_porcellus
ENSHCOG00000008687	srl	98	77.149	ENSCCAG00000032646	SRL	100	84.169	Cebus_capucinus
ENSHCOG00000008687	srl	98	82.805	ENSCATG00000032227	-	99	79.618	Cercocebus_atys
ENSHCOG00000008687	srl	98	83.258	ENSCLAG00000016242	SRL	99	80.213	Chinchilla_lanigera
ENSHCOG00000008687	srl	85	85.714	ENSCHOG00000001618	SRL	52	85.714	Choloepus_hoffmanni
ENSHCOG00000008687	srl	98	85.751	ENSCPBG00000026371	SRL	99	80.538	Chrysemys_picta_bellii
ENSHCOG00000008687	srl	92	60.432	ENSCING00000005231	-	93	60.432	Ciona_intestinalis
ENSHCOG00000008687	srl	98	82.805	ENSCANG00000035872	SRL	99	83.607	Colobus_angolensis_palliatus
ENSHCOG00000008687	srl	98	83.484	ENSCGRG00001016630	Srl	100	79.873	Cricetulus_griseus_chok1gshd
ENSHCOG00000008687	srl	98	83.484	ENSCGRG00000005458	Srl	100	79.873	Cricetulus_griseus_crigri
ENSHCOG00000008687	srl	99	74.501	ENSCSEG00000011866	SRL	96	71.250	Cynoglossus_semilaevis
ENSHCOG00000008687	srl	99	95.991	ENSCSEG00000016151	srl	100	94.703	Cynoglossus_semilaevis
ENSHCOG00000008687	srl	99	75.381	ENSCVAG00000022465	SRL	61	75.381	Cyprinodon_variegatus
ENSHCOG00000008687	srl	99	95.089	ENSCVAG00000003513	srl	100	93.856	Cyprinodon_variegatus
ENSHCOG00000008687	srl	98	93.018	ENSDARG00000104587	srl	99	90.833	Danio_rerio
ENSHCOG00000008687	srl	84	78.906	ENSDARG00000112959	CABZ01072309.1	100	78.906	Danio_rerio
ENSHCOG00000008687	srl	99	82.222	ENSDNOG00000011643	SRL	54	82.222	Dasypus_novemcinctus
ENSHCOG00000008687	srl	98	83.258	ENSDORG00000014807	Srl	99	80.213	Dipodomys_ordii
ENSHCOG00000008687	srl	82	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSHCOG00000008687	srl	98	83.673	ENSEASG00005000942	SRL	55	81.798	Equus_asinus_asinus
ENSHCOG00000008687	srl	98	83.673	ENSECAG00000024219	SRL	99	81.064	Equus_caballus
ENSHCOG00000008687	srl	99	86.928	ENSELUG00000015616	srl	100	87.526	Esox_lucius
ENSHCOG00000008687	srl	98	82.805	ENSFCAG00000022075	SRL	99	80.042	Felis_catus
ENSHCOG00000008687	srl	98	83.636	ENSFALG00000004328	SRL	63	83.636	Ficedula_albicollis
ENSHCOG00000008687	srl	98	83.484	ENSFDAG00000006199	SRL	99	80.638	Fukomys_damarensis
ENSHCOG00000008687	srl	99	94.866	ENSFHEG00000011239	srl	100	93.432	Fundulus_heteroclitus
ENSHCOG00000008687	srl	98	76.577	ENSFHEG00000011854	SRL	99	76.802	Fundulus_heteroclitus
ENSHCOG00000008687	srl	98	90.529	ENSGMOG00000014954	srl	100	92.511	Gadus_morhua
ENSHCOG00000008687	srl	98	83.636	ENSGALG00000038884	SRL	99	81.720	Gallus_gallus
ENSHCOG00000008687	srl	99	77.506	ENSGAFG00000016984	SRL	100	77.506	Gambusia_affinis
ENSHCOG00000008687	srl	99	95.089	ENSGAFG00000000010	srl	100	93.644	Gambusia_affinis
ENSHCOG00000008687	srl	98	93.187	ENSGACG00000011332	srl	100	95.385	Gasterosteus_aculeatus
ENSHCOG00000008687	srl	98	82.805	ENSGGOG00000011312	-	99	79.406	Gorilla_gorilla
ENSHCOG00000008687	srl	99	74.459	ENSHBUG00000015710	SRL	58	73.932	Haplochromis_burtoni
ENSHCOG00000008687	srl	99	96.429	ENSHBUG00000007581	srl	100	95.127	Haplochromis_burtoni
ENSHCOG00000008687	srl	98	83.258	ENSHGLG00000015271	SRL	99	80.213	Heterocephalus_glaber_female
ENSHCOG00000008687	srl	98	83.258	ENSHGLG00100019378	SRL	99	80.213	Heterocephalus_glaber_male
ENSHCOG00000008687	srl	97	69.954	ENSIPUG00000011609	SRL	95	69.954	Ictalurus_punctatus
ENSHCOG00000008687	srl	99	91.071	ENSIPUG00000012513	srl	99	90.000	Ictalurus_punctatus
ENSHCOG00000008687	srl	98	83.484	ENSSTOG00000021151	-	99	80.213	Ictidomys_tridecemlineatus
ENSHCOG00000008687	srl	98	83.258	ENSJJAG00000016400	Srl	100	80.127	Jaculus_jaculus
ENSHCOG00000008687	srl	98	76.417	ENSKMAG00000019537	SRL	100	76.417	Kryptolebias_marmoratus
ENSHCOG00000008687	srl	97	96.119	ENSKMAG00000014115	srl	93	96.912	Kryptolebias_marmoratus
ENSHCOG00000008687	srl	99	95.730	ENSLBEG00000026643	srl	100	93.856	Labrus_bergylta
ENSHCOG00000008687	srl	98	75.339	ENSLBEG00000013811	SRL	99	73.856	Labrus_bergylta
ENSHCOG00000008687	srl	98	83.937	ENSLACG00000002825	SRL	100	82.965	Latimeria_chalumnae
ENSHCOG00000008687	srl	99	88.667	ENSLOCG00000002644	srl	99	86.325	Lepisosteus_oculatus
ENSHCOG00000008687	srl	98	82.579	ENSLAFG00000006329	SRL	52	81.457	Loxodonta_africana
ENSHCOG00000008687	srl	94	84.597	ENSMFAG00000037383	SRL	99	83.607	Macaca_fascicularis
ENSHCOG00000008687	srl	98	82.805	ENSMNEG00000019236	-	97	80.786	Macaca_nemestrina
ENSHCOG00000008687	srl	98	75.566	ENSMLEG00000032156	SRL	99	72.824	Mandrillus_leucophaeus
ENSHCOG00000008687	srl	98	75.330	ENSMAMG00000013756	SRL	53	75.330	Mastacembelus_armatus
ENSHCOG00000008687	srl	99	96.205	ENSMAMG00000023322	srl	99	93.590	Mastacembelus_armatus
ENSHCOG00000008687	srl	99	74.242	ENSMZEG00005004010	SRL	59	73.718	Maylandia_zebra
ENSHCOG00000008687	srl	99	96.429	ENSMZEG00005004548	srl	100	95.127	Maylandia_zebra
ENSHCOG00000008687	srl	98	83.864	ENSMGAG00000009342	SRL	97	83.551	Meleagris_gallopavo
ENSHCOG00000008687	srl	99	82.222	ENSMICG00000032307	SRL	99	80.384	Microcebus_murinus
ENSHCOG00000008687	srl	98	82.805	ENSMOCG00000008208	Srl	100	79.237	Microtus_ochrogaster
ENSHCOG00000008687	srl	99	95.312	ENSMMOG00000013970	srl	100	95.333	Mola_mola
ENSHCOG00000008687	srl	98	73.846	ENSMMOG00000021572	SRL	99	74.286	Mola_mola
ENSHCOG00000008687	srl	98	84.127	ENSMODG00000016380	-	51	83.149	Monodelphis_domestica
ENSHCOG00000008687	srl	93	77.327	ENSMALG00000000670	SRL	98	77.327	Monopterus_albus
ENSHCOG00000008687	srl	99	96.205	ENSMALG00000005039	srl	99	96.205	Monopterus_albus
ENSHCOG00000008687	srl	98	83.710	MGP_CAROLIEiJ_G0020400	Srl	99	80.638	Mus_caroli
ENSHCOG00000008687	srl	98	83.710	ENSMUSG00000022519	Srl	99	80.638	Mus_musculus
ENSHCOG00000008687	srl	98	83.710	MGP_SPRETEiJ_G0021294	Srl	99	80.638	Mus_spretus
ENSHCOG00000008687	srl	98	83.032	ENSMPUG00000015025	SRL	54	83.032	Mustela_putorius_furo
ENSHCOG00000008687	srl	98	83.937	ENSMLUG00000030733	SRL	58	82.314	Myotis_lucifugus
ENSHCOG00000008687	srl	99	83.111	ENSNGAG00000019741	Srl	99	80.638	Nannospalax_galili
ENSHCOG00000008687	srl	99	73.593	ENSNBRG00000002422	SRL	56	75.926	Neolamprologus_brichardi
ENSHCOG00000008687	srl	99	95.982	ENSNBRG00000023775	srl	100	94.703	Neolamprologus_brichardi
ENSHCOG00000008687	srl	98	76.923	ENSNLEG00000029051	SRL	99	73.673	Nomascus_leucogenys
ENSHCOG00000008687	srl	98	76.923	ENSOPRG00000000477	-	53	75.938	Ochotona_princeps
ENSHCOG00000008687	srl	98	83.258	ENSODEG00000013256	SRL	99	80.000	Octodon_degus
ENSHCOG00000008687	srl	99	96.429	ENSONIG00000005192	srl	100	95.041	Oreochromis_niloticus
ENSHCOG00000008687	srl	98	82.579	ENSOCUG00000025140	SRL	50	80.786	Oryctolagus_cuniculus
ENSHCOG00000008687	srl	98	74.775	ENSORLG00000015064	SRL	97	74.775	Oryzias_latipes
ENSHCOG00000008687	srl	99	96.205	ENSORLG00000008291	srl	98	94.549	Oryzias_latipes
ENSHCOG00000008687	srl	98	75.000	ENSORLG00020018173	SRL	97	75.000	Oryzias_latipes_hni
ENSHCOG00000008687	srl	99	96.652	ENSORLG00020019784	srl	86	94.969	Oryzias_latipes_hni
ENSHCOG00000008687	srl	98	75.000	ENSORLG00015019063	SRL	97	75.169	Oryzias_latipes_hsok
ENSHCOG00000008687	srl	99	96.205	ENSORLG00015009342	srl	98	94.549	Oryzias_latipes_hsok
ENSHCOG00000008687	srl	98	73.684	ENSOMEG00000005682	SRL	53	73.961	Oryzias_melastigma
ENSHCOG00000008687	srl	99	95.982	ENSOMEG00000010006	srl	100	94.492	Oryzias_melastigma
ENSHCOG00000008687	srl	99	82.444	ENSOGAG00000029266	SRL	56	81.798	Otolemur_garnettii
ENSHCOG00000008687	srl	98	84.127	ENSOARG00000003074	SRL	60	79.707	Ovis_aries
ENSHCOG00000008687	srl	98	82.805	ENSPPAG00000024919	-	99	83.607	Pan_paniscus
ENSHCOG00000008687	srl	98	82.805	ENSPPRG00000010274	SRL	98	84.834	Panthera_pardus
ENSHCOG00000008687	srl	98	82.805	ENSPTIG00000015162	SRL	98	84.834	Panthera_tigris_altaica
ENSHCOG00000008687	srl	98	82.805	ENSPTRG00000007712	SRL	99	83.607	Pan_troglodytes
ENSHCOG00000008687	srl	98	82.805	ENSPANG00000013804	SRL	98	80.786	Papio_anubis
ENSHCOG00000008687	srl	99	79.596	ENSPKIG00000024974	SRL	95	77.778	Paramormyrops_kingsleyae
ENSHCOG00000008687	srl	99	91.964	ENSPKIG00000006405	srl	100	91.158	Paramormyrops_kingsleyae
ENSHCOG00000008687	srl	98	83.070	ENSPSIG00000008586	SRL	50	83.070	Pelodiscus_sinensis
ENSHCOG00000008687	srl	98	75.169	ENSPMGG00000023505	-	100	75.169	Periophthalmus_magnuspinnatus
ENSHCOG00000008687	srl	99	94.831	ENSPMGG00000021081	srl	99	92.795	Periophthalmus_magnuspinnatus
ENSHCOG00000008687	srl	98	83.032	ENSPEMG00000015842	Srl	100	79.661	Peromyscus_maniculatus_bairdii
ENSHCOG00000008687	srl	93	67.661	ENSPMAG00000004786	srl	99	68.192	Petromyzon_marinus
ENSHCOG00000008687	srl	98	84.127	ENSPCIG00000012128	SRL	99	83.149	Phascolarctos_cinereus
ENSHCOG00000008687	srl	99	93.661	ENSPFOG00000011408	srl	98	92.484	Poecilia_formosa
ENSHCOG00000008687	srl	99	76.392	ENSPLAG00000002932	SRL	100	76.392	Poecilia_latipinna
ENSHCOG00000008687	srl	99	95.312	ENSPLAG00000008017	srl	99	93.696	Poecilia_latipinna
ENSHCOG00000008687	srl	99	95.312	ENSPMEG00000006745	srl	99	93.696	Poecilia_mexicana
ENSHCOG00000008687	srl	99	74.675	ENSPMEG00000005890	SRL	61	74.194	Poecilia_mexicana
ENSHCOG00000008687	srl	99	77.232	ENSPREG00000000315	SRL	100	77.283	Poecilia_reticulata
ENSHCOG00000008687	srl	99	95.536	ENSPREG00000007751	srl	99	95.536	Poecilia_reticulata
ENSHCOG00000008687	srl	93	84.726	ENSPPYG00000007053	SRL	98	84.726	Pongo_abelii
ENSHCOG00000008687	srl	98	83.673	ENSPCAG00000003378	-	50	83.673	Procavia_capensis
ENSHCOG00000008687	srl	99	82.444	ENSPCOG00000023135	SRL	99	84.309	Propithecus_coquereli
ENSHCOG00000008687	srl	98	83.258	ENSPVAG00000006586	SRL	56	82.119	Pteropus_vampyrus
ENSHCOG00000008687	srl	99	96.205	ENSPNYG00000001200	srl	100	94.915	Pundamilia_nyererei
ENSHCOG00000008687	srl	99	74.242	ENSPNYG00000003423	SRL	58	73.718	Pundamilia_nyererei
ENSHCOG00000008687	srl	98	75.283	ENSPNAG00000007361	-	91	75.283	Pygocentrus_nattereri
ENSHCOG00000008687	srl	99	91.964	ENSPNAG00000023106	srl	100	90.909	Pygocentrus_nattereri
ENSHCOG00000008687	srl	98	83.937	ENSRNOG00000005269	Srl	50	82.456	Rattus_norvegicus
ENSHCOG00000008687	srl	98	82.805	ENSRBIG00000042358	SRL	51	81.360	Rhinopithecus_bieti
ENSHCOG00000008687	srl	98	82.805	ENSSBOG00000029273	SRL	99	79.618	Saimiri_boliviensis_boliviensis
ENSHCOG00000008687	srl	98	83.900	ENSSHAG00000011715	-	51	82.889	Sarcophilus_harrisii
ENSHCOG00000008687	srl	99	92.584	ENSSFOG00015009773	srl	100	90.515	Scleropages_formosus
ENSHCOG00000008687	srl	98	77.928	ENSSFOG00015021327	SRL	50	77.455	Scleropages_formosus
ENSHCOG00000008687	srl	100	94.678	ENSSMAG00000016274	srl	100	94.068	Scophthalmus_maximus
ENSHCOG00000008687	srl	98	74.725	ENSSMAG00000002232	SRL	50	74.725	Scophthalmus_maximus
ENSHCOG00000008687	srl	98	76.889	ENSSDUG00000009161	SRL	99	76.889	Seriola_dumerili
ENSHCOG00000008687	srl	98	97.297	ENSSDUG00000010808	srl	98	97.297	Seriola_dumerili
ENSHCOG00000008687	srl	99	96.875	ENSSLDG00000022024	srl	100	95.975	Seriola_lalandi_dorsalis
ENSHCOG00000008687	srl	98	76.638	ENSSLDG00000014601	SRL	100	77.193	Seriola_lalandi_dorsalis
ENSHCOG00000008687	srl	99	81.596	ENSSPUG00000016859	SRL	99	81.637	Sphenodon_punctatus
ENSHCOG00000008687	srl	98	77.778	ENSSPAG00000014254	SRL	98	77.778	Stegastes_partitus
ENSHCOG00000008687	srl	100	96.009	ENSSPAG00000019105	srl	100	95.772	Stegastes_partitus
ENSHCOG00000008687	srl	98	83.447	ENSSSCG00000007949	SRL	98	83.447	Sus_scrofa
ENSHCOG00000008687	srl	80	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSHCOG00000008687	srl	98	83.864	ENSTGUG00000003951	-	99	82.159	Taeniopygia_guttata
ENSHCOG00000008687	srl	99	96.429	ENSTRUG00000006005	srl	100	95.127	Takifugu_rubripes
ENSHCOG00000008687	srl	93	77.804	ENSTRUG00000013310	SRL	55	77.804	Takifugu_rubripes
ENSHCOG00000008687	srl	99	96.429	ENSTNIG00000009739	srl	100	94.915	Tetraodon_nigroviridis
ENSHCOG00000008687	srl	98	83.032	ENSUAMG00000005701	SRL	55	83.032	Ursus_americanus
ENSHCOG00000008687	srl	98	83.032	ENSUMAG00000002574	SRL	55	83.032	Ursus_maritimus
ENSHCOG00000008687	srl	98	83.032	ENSVVUG00000016331	-	50	80.963	Vulpes_vulpes
ENSHCOG00000008687	srl	99	81.250	ENSXETG00000017313	srl	99	81.250	Xenopus_tropicalis
ENSHCOG00000008687	srl	93	96.200	ENSXCOG00000010424	srl	97	96.200	Xiphophorus_couchianus
ENSHCOG00000008687	srl	99	77.283	ENSXCOG00000014584	SRL	99	77.333	Xiphophorus_couchianus
ENSHCOG00000008687	srl	99	95.536	ENSXMAG00000004625	srl	97	93.542	Xiphophorus_maculatus
ENSHCOG00000008687	srl	99	74.892	ENSXMAG00000027598	SRL	64	74.573	Xiphophorus_maculatus