EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000008761 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 10555 bases
Position: chrKV880343.1:144957-155511
Accession: 109528875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000006867	EST1	PF10374.9	7.9e-14	1	1
ENSHCOP00000006867	EST1_DNA_bind	PF10373.9	8.4e-58	1	1
ENSHCOP00000006867	PIN_4	PF13638.6	1.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000002960	-	3588	XM_019891918	ENSHCOP00000006867	1195 (aa)	XP_019747477	-

Gene Model

Click here to download ENSHCOG00000008761's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008761's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008761	smg6	96	53.485	ENSG00000070366	SMG6	100	59.134	Homo_sapiens
ENSHCOG00000008761	smg6	83	72.201	ENSAPOG00000019448	smg6	65	72.104	Acanthochromis_polyacanthus
ENSHCOG00000008761	smg6	97	53.615	ENSAMEG00000007632	SMG6	72	58.969	Ailuropoda_melanoleuca
ENSHCOG00000008761	smg6	84	71.147	ENSACIG00000012997	smg6	71	70.880	Amphilophus_citrinellus
ENSHCOG00000008761	smg6	83	72.108	ENSAOCG00000002630	smg6	65	71.918	Amphiprion_ocellaris
ENSHCOG00000008761	smg6	83	71.922	ENSAPEG00000019101	smg6	65	71.733	Amphiprion_percula
ENSHCOG00000008761	smg6	84	68.704	ENSATEG00000006483	smg6	65	68.962	Anabas_testudineus
ENSHCOG00000008761	smg6	67	52.673	ENSACAG00000011783	SMG6	71	53.092	Anolis_carolinensis
ENSHCOG00000008761	smg6	91	55.903	ENSANAG00000035760	SMG6	71	59.065	Aotus_nancymaae
ENSHCOG00000008761	smg6	83	69.520	ENSACLG00000005288	smg6	69	70.429	Astatotilapia_calliptera
ENSHCOG00000008761	smg6	80	67.206	ENSAMXG00000017326	smg6	78	62.254	Astyanax_mexicanus
ENSHCOG00000008761	smg6	99	53.429	ENSBTAG00000000267	SMG6	77	56.526	Bos_taurus
ENSHCOG00000008761	smg6	97	53.852	ENSCJAG00000001820	SMG6	71	59.160	Callithrix_jacchus
ENSHCOG00000008761	smg6	97	53.777	ENSCAFG00000019260	SMG6	72	59.312	Canis_familiaris
ENSHCOG00000008761	smg6	97	53.777	ENSCAFG00020009770	SMG6	72	59.312	Canis_lupus_dingo
ENSHCOG00000008761	smg6	97	54.146	ENSCHIG00000021998	SMG6	77	56.526	Capra_hircus
ENSHCOG00000008761	smg6	97	53.603	ENSTSYG00000003406	SMG6	100	59.134	Carlito_syrichta
ENSHCOG00000008761	smg6	83	48.778	ENSCAPG00000016197	SMG6	66	54.725	Cavia_aperea
ENSHCOG00000008761	smg6	83	58.095	ENSCPOG00000014878	SMG6	92	58.772	Cavia_porcellus
ENSHCOG00000008761	smg6	97	53.571	ENSCCAG00000035801	SMG6	77	56.261	Cebus_capucinus
ENSHCOG00000008761	smg6	83	58.913	ENSCATG00000031956	SMG6	71	58.969	Cercocebus_atys
ENSHCOG00000008761	smg6	96	53.551	ENSCLAG00000006748	SMG6	89	59.556	Chinchilla_lanigera
ENSHCOG00000008761	smg6	83	59.009	ENSCSAG00000013800	SMG6	71	59.065	Chlorocebus_sabaeus
ENSHCOG00000008761	smg6	83	57.689	ENSCPBG00000020369	SMG6	71	57.839	Chrysemys_picta_bellii
ENSHCOG00000008761	smg6	83	58.762	ENSCANG00000031764	SMG6	100	59.510	Colobus_angolensis_palliatus
ENSHCOG00000008761	smg6	97	47.808	ENSCGRG00000007782	Smg6	72	53.104	Cricetulus_griseus_crigri
ENSHCOG00000008761	smg6	83	69.717	ENSCSEG00000012757	smg6	68	69.340	Cynoglossus_semilaevis
ENSHCOG00000008761	smg6	83	67.163	ENSCVAG00000012789	smg6	65	68.178	Cyprinodon_variegatus
ENSHCOG00000008761	smg6	88	62.913	ENSDARG00000100481	smg6	71	62.735	Danio_rerio
ENSHCOG00000008761	smg6	97	53.647	ENSDNOG00000048283	SMG6	71	58.874	Dasypus_novemcinctus
ENSHCOG00000008761	smg6	97	49.515	ENSDORG00000016614	Smg6	86	61.111	Dipodomys_ordii
ENSHCOG00000008761	smg6	88	87.500	ENSETEG00000016790	SMG6	59	87.500	Echinops_telfairi
ENSHCOG00000008761	smg6	77	48.640	ENSEBUG00000005059	smg6	63	47.643	Eptatretus_burgeri
ENSHCOG00000008761	smg6	97	54.065	ENSEASG00005009318	SMG6	76	56.752	Equus_asinus_asinus
ENSHCOG00000008761	smg6	97	53.902	ENSECAG00000006519	SMG6	71	59.178	Equus_caballus
ENSHCOG00000008761	smg6	83	49.190	ENSEEUG00000003493	SMG6	72	49.475	Erinaceus_europaeus
ENSHCOG00000008761	smg6	83	65.610	ENSELUG00000005934	smg6	61	63.433	Esox_lucius
ENSHCOG00000008761	smg6	97	53.734	ENSFCAG00000028817	SMG6	72	59.351	Felis_catus
ENSHCOG00000008761	smg6	83	57.945	ENSFALG00000006538	SMG6	73	58.071	Ficedula_albicollis
ENSHCOG00000008761	smg6	96	53.475	ENSFDAG00000015106	SMG6	86	60.185	Fukomys_damarensis
ENSHCOG00000008761	smg6	83	67.814	ENSFHEG00000013282	smg6	66	68.733	Fundulus_heteroclitus
ENSHCOG00000008761	smg6	63	73.113	ENSGMOG00000019077	smg6	58	73.113	Gadus_morhua
ENSHCOG00000008761	smg6	83	58.341	ENSGALG00000003108	SMG6	70	58.206	Gallus_gallus
ENSHCOG00000008761	smg6	83	67.817	ENSGAFG00000000379	smg6	65	68.709	Gambusia_affinis
ENSHCOG00000008761	smg6	84	69.787	ENSGACG00000020521	smg6	81	69.138	Gasterosteus_aculeatus
ENSHCOG00000008761	smg6	83	56.734	ENSGAGG00000025617	SMG6	73	56.788	Gopherus_agassizii
ENSHCOG00000008761	smg6	83	59.009	ENSGGOG00000017156	SMG6	71	59.065	Gorilla_gorilla
ENSHCOG00000008761	smg6	83	69.643	ENSHBUG00000021311	smg6	65	70.522	Haplochromis_burtoni
ENSHCOG00000008761	smg6	96	53.513	ENSHGLG00000012882	SMG6	86	60.648	Heterocephalus_glaber_female
ENSHCOG00000008761	smg6	96	53.431	ENSHGLG00100017815	SMG6	86	60.648	Heterocephalus_glaber_male
ENSHCOG00000008761	smg6	83	61.798	ENSIPUG00000012493	smg6	65	61.445	Ictalurus_punctatus
ENSHCOG00000008761	smg6	97	53.490	ENSSTOG00000028127	SMG6	86	61.574	Ictidomys_tridecemlineatus
ENSHCOG00000008761	smg6	58	57.278	ENSJJAG00000015367	Smg6	61	56.063	Jaculus_jaculus
ENSHCOG00000008761	smg6	83	69.116	ENSKMAG00000000279	smg6	65	69.302	Kryptolebias_marmoratus
ENSHCOG00000008761	smg6	83	69.972	ENSLBEG00000002184	smg6	64	69.880	Labrus_bergylta
ENSHCOG00000008761	smg6	79	64.741	ENSLOCG00000006448	smg6	75	64.272	Lepisosteus_oculatus
ENSHCOG00000008761	smg6	96	53.557	ENSLAFG00000001261	SMG6	71	59.009	Loxodonta_africana
ENSHCOG00000008761	smg6	83	59.009	ENSMFAG00000003394	SMG6	71	59.065	Macaca_fascicularis
ENSHCOG00000008761	smg6	83	59.009	ENSMMUG00000023161	SMG6	71	59.065	Macaca_mulatta
ENSHCOG00000008761	smg6	97	51.752	ENSMNEG00000044592	SMG6	71	57.074	Macaca_nemestrina
ENSHCOG00000008761	smg6	78	61.792	ENSMLEG00000029353	SMG6	71	62.353	Mandrillus_leucophaeus
ENSHCOG00000008761	smg6	83	70.729	ENSMAMG00000020119	smg6	69	71.004	Mastacembelus_armatus
ENSHCOG00000008761	smg6	83	69.614	ENSMZEG00005024736	smg6	64	70.522	Maylandia_zebra
ENSHCOG00000008761	smg6	52	57.100	ENSMGAG00000005401	-	61	57.251	Meleagris_gallopavo
ENSHCOG00000008761	smg6	97	53.771	ENSMICG00000012913	SMG6	77	56.487	Microcebus_murinus
ENSHCOG00000008761	smg6	83	70.132	ENSMMOG00000010883	smg6	68	70.416	Mola_mola
ENSHCOG00000008761	smg6	83	59.104	ENSMODG00000010622	SMG6	72	58.969	Monodelphis_domestica
ENSHCOG00000008761	smg6	83	70.185	ENSMALG00000001106	smg6	64	69.907	Monopterus_albus
ENSHCOG00000008761	smg6	96	53.240	MGP_CAROLIEiJ_G0016729	Smg6	90	64.506	Mus_caroli
ENSHCOG00000008761	smg6	96	53.607	ENSMUSG00000038290	Smg6	97	61.648	Mus_musculus
ENSHCOG00000008761	smg6	97	52.874	MGP_PahariEiJ_G0017866	Smg6	90	64.198	Mus_pahari
ENSHCOG00000008761	smg6	96	53.525	MGP_SPRETEiJ_G0017572	Smg6	97	61.364	Mus_spretus
ENSHCOG00000008761	smg6	97	54.140	ENSMPUG00000013046	SMG6	77	56.437	Mustela_putorius_furo
ENSHCOG00000008761	smg6	97	53.740	ENSMLUG00000005739	SMG6	77	56.487	Myotis_lucifugus
ENSHCOG00000008761	smg6	83	58.246	ENSNGAG00000007287	Smg6	92	57.082	Nannospalax_galili
ENSHCOG00000008761	smg6	83	70.409	ENSNBRG00000009511	smg6	70	69.411	Neolamprologus_brichardi
ENSHCOG00000008761	smg6	83	59.009	ENSNLEG00000017171	SMG6	100	59.134	Nomascus_leucogenys
ENSHCOG00000008761	smg6	83	58.476	ENSMEUG00000015804	SMG6	73	57.224	Notamacropus_eugenii
ENSHCOG00000008761	smg6	65	61.749	ENSOPRG00000000579	SMG6	82	61.290	Ochotona_princeps
ENSHCOG00000008761	smg6	83	50.668	ENSODEG00000008038	SMG6	81	55.233	Octodon_degus
ENSHCOG00000008761	smg6	83	70.038	ENSONIG00000005594	smg6	73	70.356	Oreochromis_niloticus
ENSHCOG00000008761	smg6	83	58.818	ENSOCUG00000013018	SMG6	71	59.065	Oryctolagus_cuniculus
ENSHCOG00000008761	smg6	87	65.873	ENSORLG00000003317	smg6	69	64.772	Oryzias_latipes
ENSHCOG00000008761	smg6	83	68.089	ENSORLG00020015343	smg6	65	68.347	Oryzias_latipes_hni
ENSHCOG00000008761	smg6	83	68.085	ENSORLG00015020454	smg6	65	67.996	Oryzias_latipes_hsok
ENSHCOG00000008761	smg6	87	65.810	ENSOMEG00000010838	smg6	70	64.802	Oryzias_melastigma
ENSHCOG00000008761	smg6	97	53.716	ENSOGAG00000004483	SMG6	71	59.295	Otolemur_garnettii
ENSHCOG00000008761	smg6	97	54.228	ENSOARG00000015076	SMG6	79	56.526	Ovis_aries
ENSHCOG00000008761	smg6	97	53.323	ENSPPAG00000043296	SMG6	71	58.874	Pan_paniscus
ENSHCOG00000008761	smg6	97	53.734	ENSPPRG00000014581	SMG6	72	59.351	Panthera_pardus
ENSHCOG00000008761	smg6	97	53.815	ENSPTIG00000008925	SMG6	100	59.699	Panthera_tigris_altaica
ENSHCOG00000008761	smg6	83	59.104	ENSPTRG00000008544	SMG6	100	59.134	Pan_troglodytes
ENSHCOG00000008761	smg6	97	53.366	ENSPANG00000024588	SMG6	71	58.969	Papio_anubis
ENSHCOG00000008761	smg6	73	55.676	ENSPSIG00000006660	SMG6	67	56.291	Pelodiscus_sinensis
ENSHCOG00000008761	smg6	83	68.426	ENSPMGG00000000844	smg6	74	67.891	Periophthalmus_magnuspinnatus
ENSHCOG00000008761	smg6	83	58.532	ENSPEMG00000020707	Smg6	87	61.111	Peromyscus_maniculatus_bairdii
ENSHCOG00000008761	smg6	83	68.489	ENSPFOG00000012035	smg6	73	68.843	Poecilia_formosa
ENSHCOG00000008761	smg6	83	68.056	ENSPLAG00000017660	smg6	66	68.860	Poecilia_latipinna
ENSHCOG00000008761	smg6	83	69.017	ENSPMEG00000000258	smg6	66	68.953	Poecilia_mexicana
ENSHCOG00000008761	smg6	83	67.778	ENSPREG00000010066	smg6	66	68.582	Poecilia_reticulata
ENSHCOG00000008761	smg6	83	54.198	ENSPPYG00000007790	SMG6	71	54.346	Pongo_abelii
ENSHCOG00000008761	smg6	91	60.941	ENSPCAG00000000552	SMG6	71	56.119	Procavia_capensis
ENSHCOG00000008761	smg6	97	53.647	ENSPCOG00000020925	SMG6	71	59.160	Propithecus_coquereli
ENSHCOG00000008761	smg6	91	61.974	ENSPVAG00000002159	SMG6	67	61.660	Pteropus_vampyrus
ENSHCOG00000008761	smg6	83	69.607	ENSPNYG00000024151	smg6	70	69.785	Pundamilia_nyererei
ENSHCOG00000008761	smg6	83	62.252	ENSPNAG00000015480	smg6	64	69.381	Pygocentrus_nattereri
ENSHCOG00000008761	smg6	83	58.151	ENSRNOG00000003041	Smg6	90	64.815	Rattus_norvegicus
ENSHCOG00000008761	smg6	83	59.104	ENSRBIG00000024746	SMG6	71	59.160	Rhinopithecus_bieti
ENSHCOG00000008761	smg6	83	59.104	ENSRROG00000030423	SMG6	100	59.510	Rhinopithecus_roxellana
ENSHCOG00000008761	smg6	97	53.728	ENSSBOG00000022518	SMG6	76	54.409	Saimiri_boliviensis_boliviensis
ENSHCOG00000008761	smg6	83	62.925	ENSSFOG00015005436	smg6	61	62.838	Scleropages_formosus
ENSHCOG00000008761	smg6	84	70.248	ENSSMAG00000019777	smg6	65	69.605	Scophthalmus_maximus
ENSHCOG00000008761	smg6	83	72.145	ENSSDUG00000016412	smg6	64	71.588	Seriola_dumerili
ENSHCOG00000008761	smg6	79	71.083	ENSSLDG00000020747	smg6	67	70.503	Seriola_lalandi_dorsalis
ENSHCOG00000008761	smg6	83	57.252	ENSSPUG00000007152	SMG6	72	56.543	Sphenodon_punctatus
ENSHCOG00000008761	smg6	83	72.295	ENSSPAG00000015633	smg6	65	71.918	Stegastes_partitus
ENSHCOG00000008761	smg6	97	54.021	ENSSSCG00000017826	SMG6	77	56.790	Sus_scrofa
ENSHCOG00000008761	smg6	83	58.492	ENSTGUG00000005836	SMG6	72	58.413	Taeniopygia_guttata
ENSHCOG00000008761	smg6	83	70.029	ENSTRUG00000000358	smg6	71	70.124	Takifugu_rubripes
ENSHCOG00000008761	smg6	83	69.916	ENSTNIG00000016164	smg6	73	70.336	Tetraodon_nigroviridis
ENSHCOG00000008761	smg6	97	50.529	ENSTBEG00000011424	SMG6	72	55.460	Tupaia_belangeri
ENSHCOG00000008761	smg6	86	55.425	ENSTTRG00000001175	SMG6	68	55.147	Tursiops_truncatus
ENSHCOG00000008761	smg6	97	53.890	ENSUAMG00000025152	SMG6	73	58.840	Ursus_americanus
ENSHCOG00000008761	smg6	97	53.896	ENSUMAG00000009306	SMG6	73	59.160	Ursus_maritimus
ENSHCOG00000008761	smg6	79	74.074	ENSVPAG00000000225	SMG6	64	74.074	Vicugna_pacos
ENSHCOG00000008761	smg6	97	53.902	ENSVVUG00000021727	SMG6	74	59.462	Vulpes_vulpes
ENSHCOG00000008761	smg6	83	53.846	ENSXETG00000023799	SMG6	69	54.481	Xenopus_tropicalis
ENSHCOG00000008761	smg6	83	68.571	ENSXCOG00000009867	smg6	66	69.238	Xiphophorus_couchianus
ENSHCOG00000008761	smg6	83	67.996	ENSXMAG00000010321	smg6	65	68.802	Xiphophorus_maculatus