EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000008819 (Gene tree)
Gene ID: 109518980
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 2483 bases
Position: chrKV880061.1:2321401-2323883
Accession: 109518980
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000006949	LSM	PF01423.22	8.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000002836	-	1173	XM_019875174	ENSHCOP00000006949	142 (aa)	XP_019730733	UPI00094E2A7D

Gene Model

Click here to download ENSHCOG00000008819's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008819's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000008819	lsm4	69	32.673	ENSHCOG00000014057	si:ch73-14h10.2	100	32.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008819	lsm4	62	98.864	ENSG00000130520	LSM4	99	77.372	Homo_sapiens
ENSHCOG00000008819	lsm4	100	90.728	ENSAPOG00000005643	lsm4	100	90.728	Acanthochromis_polyacanthus
ENSHCOG00000008819	lsm4	61	98.851	ENSAMEG00000011162	LSM4	93	77.206	Ailuropoda_melanoleuca
ENSHCOG00000008819	lsm4	100	92.568	ENSAOCG00000006414	lsm4	100	92.568	Amphiprion_ocellaris
ENSHCOG00000008819	lsm4	100	91.946	ENSAPEG00000006238	lsm4	100	91.946	Amphiprion_percula
ENSHCOG00000008819	lsm4	100	90.132	ENSATEG00000016559	lsm4	100	90.132	Anabas_testudineus
ENSHCOG00000008819	lsm4	62	98.864	ENSANAG00000034659	LSM4	99	77.372	Aotus_nancymaae
ENSHCOG00000008819	lsm4	100	92.517	ENSACLG00000022738	lsm4	100	92.517	Astatotilapia_calliptera
ENSHCOG00000008819	lsm4	100	90.210	ENSAMXG00000016932	lsm4	100	90.210	Astyanax_mexicanus
ENSHCOG00000008819	lsm4	62	98.864	ENSBTAG00000008578	LSM4	99	77.372	Bos_taurus
ENSHCOG00000008819	lsm4	58	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSHCOG00000008819	lsm4	62	98.864	ENSCJAG00000014171	LSM4	99	77.372	Callithrix_jacchus
ENSHCOG00000008819	lsm4	62	98.864	ENSCAFG00000014900	LSM4	90	77.372	Canis_familiaris
ENSHCOG00000008819	lsm4	62	98.864	ENSCAFG00020012137	LSM4	99	77.372	Canis_lupus_dingo
ENSHCOG00000008819	lsm4	61	98.851	ENSCHIG00000010928	LSM4	90	77.206	Capra_hircus
ENSHCOG00000008819	lsm4	62	97.727	ENSTSYG00000030906	LSM4	99	76.642	Carlito_syrichta
ENSHCOG00000008819	lsm4	62	97.727	ENSCAPG00000014140	LSM4	96	77.612	Cavia_aperea
ENSHCOG00000008819	lsm4	62	97.727	ENSCPOG00000024117	LSM4	96	77.612	Cavia_porcellus
ENSHCOG00000008819	lsm4	62	98.864	ENSCCAG00000036308	LSM4	99	77.372	Cebus_capucinus
ENSHCOG00000008819	lsm4	62	98.864	ENSCATG00000029311	LSM4	99	77.372	Cercocebus_atys
ENSHCOG00000008819	lsm4	62	98.864	ENSCLAG00000010828	LSM4	99	76.642	Chinchilla_lanigera
ENSHCOG00000008819	lsm4	62	98.864	ENSCSAG00000005370	LSM4	99	77.372	Chlorocebus_sabaeus
ENSHCOG00000008819	lsm4	62	100.000	ENSCPBG00000012925	LSM4	96	88.148	Chrysemys_picta_bellii
ENSHCOG00000008819	lsm4	61	93.023	ENSCING00000007519	-	76	87.629	Ciona_intestinalis
ENSHCOG00000008819	lsm4	61	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSHCOG00000008819	lsm4	62	98.864	ENSCANG00000043686	LSM4	99	77.372	Colobus_angolensis_palliatus
ENSHCOG00000008819	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	75.912	Cricetulus_griseus_chok1gshd
ENSHCOG00000008819	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	99	75.735	Cricetulus_griseus_crigri
ENSHCOG00000008819	lsm4	100	95.070	ENSCSEG00000016127	lsm4	100	95.070	Cynoglossus_semilaevis
ENSHCOG00000008819	lsm4	89	94.531	ENSCVAG00000021828	lsm4	98	94.531	Cyprinodon_variegatus
ENSHCOG00000008819	lsm4	100	95.105	ENSCVAG00000010601	lsm4	100	95.105	Cyprinodon_variegatus
ENSHCOG00000008819	lsm4	96	86.014	ENSDARG00000023852	lsm4	99	81.690	Danio_rerio
ENSHCOG00000008819	lsm4	62	97.727	ENSDORG00000024225	Lsm4	99	76.642	Dipodomys_ordii
ENSHCOG00000008819	lsm4	68	81.443	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSHCOG00000008819	lsm4	51	97.260	ENSETEG00000007762	-	98	73.770	Echinops_telfairi
ENSHCOG00000008819	lsm4	56	88.750	ENSEBUG00000003639	-	64	78.125	Eptatretus_burgeri
ENSHCOG00000008819	lsm4	62	98.864	ENSECAG00000010141	LSM4	56	77.372	Equus_caballus
ENSHCOG00000008819	lsm4	93	91.667	ENSELUG00000012821	lsm4	100	91.667	Esox_lucius
ENSHCOG00000008819	lsm4	62	98.864	ENSFCAG00000040580	LSM4	99	77.372	Felis_catus
ENSHCOG00000008819	lsm4	61	100.000	ENSFALG00000009478	LSM4	96	88.060	Ficedula_albicollis
ENSHCOG00000008819	lsm4	61	98.851	ENSFDAG00000010124	LSM4	99	77.206	Fukomys_damarensis
ENSHCOG00000008819	lsm4	99	81.633	ENSGMOG00000007729	lsm4	99	80.272	Gadus_morhua
ENSHCOG00000008819	lsm4	62	100.000	ENSGALG00000003385	LSM4	96	88.148	Gallus_gallus
ENSHCOG00000008819	lsm4	100	95.804	ENSGAFG00000004903	lsm4	97	93.750	Gambusia_affinis
ENSHCOG00000008819	lsm4	100	84.667	ENSGACG00000008140	lsm4	100	87.333	Gasterosteus_aculeatus
ENSHCOG00000008819	lsm4	62	100.000	ENSGAGG00000017812	LSM4	96	88.148	Gopherus_agassizii
ENSHCOG00000008819	lsm4	62	98.864	ENSGGOG00000012914	-	99	77.372	Gorilla_gorilla
ENSHCOG00000008819	lsm4	100	93.151	ENSHBUG00000008858	lsm4	80	93.151	Haplochromis_burtoni
ENSHCOG00000008819	lsm4	96	77.372	ENSHGLG00000006568	LSM4	99	77.372	Heterocephalus_glaber_female
ENSHCOG00000008819	lsm4	65	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSHCOG00000008819	lsm4	100	90.210	ENSIPUG00000005368	Lsm4	100	90.210	Ictalurus_punctatus
ENSHCOG00000008819	lsm4	62	98.864	ENSSTOG00000016494	LSM4	99	77.372	Ictidomys_tridecemlineatus
ENSHCOG00000008819	lsm4	62	96.591	ENSJJAG00000017420	Lsm4	99	75.912	Jaculus_jaculus
ENSHCOG00000008819	lsm4	100	93.750	ENSKMAG00000005073	lsm4	100	93.750	Kryptolebias_marmoratus
ENSHCOG00000008819	lsm4	100	91.946	ENSLBEG00000027930	lsm4	100	91.946	Labrus_bergylta
ENSHCOG00000008819	lsm4	96	83.212	ENSLACG00000015861	LSM4	99	82.734	Latimeria_chalumnae
ENSHCOG00000008819	lsm4	89	90.625	ENSLOCG00000002025	lsm4	100	86.713	Lepisosteus_oculatus
ENSHCOG00000008819	lsm4	61	97.701	ENSLAFG00000017459	LSM4	98	76.471	Loxodonta_africana
ENSHCOG00000008819	lsm4	62	98.864	ENSMFAG00000031194	LSM4	99	77.372	Macaca_fascicularis
ENSHCOG00000008819	lsm4	62	98.864	ENSMMUG00000004405	LSM4	99	77.372	Macaca_mulatta
ENSHCOG00000008819	lsm4	62	98.864	ENSMNEG00000042899	LSM4	99	77.372	Macaca_nemestrina
ENSHCOG00000008819	lsm4	62	98.864	ENSMLEG00000027948	LSM4	99	77.372	Mandrillus_leucophaeus
ENSHCOG00000008819	lsm4	100	95.775	ENSMAMG00000006190	lsm4	100	95.775	Mastacembelus_armatus
ENSHCOG00000008819	lsm4	100	93.151	ENSMZEG00005016420	lsm4	100	93.151	Maylandia_zebra
ENSHCOG00000008819	lsm4	94	78.519	ENSMGAG00000004976	LSM4	96	80.451	Meleagris_gallopavo
ENSHCOG00000008819	lsm4	70	95.960	ENSMICG00000000222	LSM4	99	76.642	Microcebus_murinus
ENSHCOG00000008819	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	75.182	Microtus_ochrogaster
ENSHCOG00000008819	lsm4	51	100.000	ENSMODG00000015044	-	98	75.410	Monodelphis_domestica
ENSHCOG00000008819	lsm4	100	94.406	ENSMALG00000018159	lsm4	100	94.406	Monopterus_albus
ENSHCOG00000008819	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	75.182	Mus_caroli
ENSHCOG00000008819	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSHCOG00000008819	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	75.182	Mus_pahari
ENSHCOG00000008819	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	75.182	Mus_spretus
ENSHCOG00000008819	lsm4	62	98.864	ENSMPUG00000015589	LSM4	99	77.372	Mustela_putorius_furo
ENSHCOG00000008819	lsm4	61	98.851	ENSMLUG00000004010	LSM4	98	77.206	Myotis_lucifugus
ENSHCOG00000008819	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	75.182	Nannospalax_galili
ENSHCOG00000008819	lsm4	76	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSHCOG00000008819	lsm4	51	95.890	ENSMEUG00000013229	LSM4	98	71.311	Notamacropus_eugenii
ENSHCOG00000008819	lsm4	54	97.403	ENSOPRG00000005575	LSM4	98	74.590	Ochotona_princeps
ENSHCOG00000008819	lsm4	62	98.864	ENSODEG00000020549	-	99	77.372	Octodon_degus
ENSHCOG00000008819	lsm4	62	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSHCOG00000008819	lsm4	96	60.870	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSHCOG00000008819	lsm4	100	92.517	ENSONIG00000012724	lsm4	100	92.517	Oreochromis_niloticus
ENSHCOG00000008819	lsm4	61	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSHCOG00000008819	lsm4	100	93.056	ENSORLG00000008391	lsm4	100	93.056	Oryzias_latipes
ENSHCOG00000008819	lsm4	100	93.056	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSHCOG00000008819	lsm4	100	92.361	ENSORLG00015010205	lsm4	100	92.361	Oryzias_latipes_hsok
ENSHCOG00000008819	lsm4	100	93.056	ENSOMEG00000003606	lsm4	100	93.056	Oryzias_melastigma
ENSHCOG00000008819	lsm4	69	95.918	ENSOGAG00000027992	LSM4	99	73.103	Otolemur_garnettii
ENSHCOG00000008819	lsm4	61	98.851	ENSOARG00000012553	LSM4	95	76.033	Ovis_aries
ENSHCOG00000008819	lsm4	62	98.864	ENSPPAG00000044045	-	99	77.372	Pan_paniscus
ENSHCOG00000008819	lsm4	62	98.864	ENSPPRG00000018264	LSM4	99	77.372	Panthera_pardus
ENSHCOG00000008819	lsm4	61	98.851	ENSPTIG00000006306	LSM4	99	77.206	Panthera_tigris_altaica
ENSHCOG00000008819	lsm4	62	98.864	ENSPTRG00000031470	LSM4	99	77.372	Pan_troglodytes
ENSHCOG00000008819	lsm4	62	98.864	ENSPANG00000014399	LSM4	99	77.372	Papio_anubis
ENSHCOG00000008819	lsm4	100	89.510	ENSPKIG00000006154	lsm4	100	89.510	Paramormyrops_kingsleyae
ENSHCOG00000008819	lsm4	61	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSHCOG00000008819	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	75.182	Peromyscus_maniculatus_bairdii
ENSHCOG00000008819	lsm4	100	95.105	ENSPFOG00000000570	lsm4	76	95.105	Poecilia_formosa
ENSHCOG00000008819	lsm4	100	95.105	ENSPLAG00000016267	lsm4	100	95.105	Poecilia_latipinna
ENSHCOG00000008819	lsm4	100	95.105	ENSPMEG00000016378	lsm4	100	95.105	Poecilia_mexicana
ENSHCOG00000008819	lsm4	100	95.804	ENSPREG00000011290	lsm4	76	95.804	Poecilia_reticulata
ENSHCOG00000008819	lsm4	62	98.864	ENSPPYG00000009736	LSM4	99	77.372	Pongo_abelii
ENSHCOG00000008819	lsm4	51	97.260	ENSPCAG00000008513	LSM4	98	73.770	Procavia_capensis
ENSHCOG00000008819	lsm4	70	95.960	ENSPCOG00000019837	LSM4	99	76.642	Propithecus_coquereli
ENSHCOG00000008819	lsm4	62	98.864	ENSPVAG00000015383	LSM4	99	77.372	Pteropus_vampyrus
ENSHCOG00000008819	lsm4	100	93.151	ENSPNYG00000016794	lsm4	100	93.151	Pundamilia_nyererei
ENSHCOG00000008819	lsm4	95	92.593	ENSPNAG00000016598	lsm4	100	92.593	Pygocentrus_nattereri
ENSHCOG00000008819	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	75.182	Rattus_norvegicus
ENSHCOG00000008819	lsm4	62	98.864	ENSRBIG00000024717	LSM4	99	77.372	Rhinopithecus_bieti
ENSHCOG00000008819	lsm4	62	98.864	ENSRROG00000045706	LSM4	99	77.372	Rhinopithecus_roxellana
ENSHCOG00000008819	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSHCOG00000008819	lsm4	52	98.649	ENSSBOG00000022455	LSM4	98	74.797	Saimiri_boliviensis_boliviensis
ENSHCOG00000008819	lsm4	62	100.000	ENSSHAG00000011559	LSM4	99	78.102	Sarcophilus_harrisii
ENSHCOG00000008819	lsm4	100	90.909	ENSSFOG00015021067	lsm4	100	90.909	Scleropages_formosus
ENSHCOG00000008819	lsm4	100	82.000	ENSSMAG00000021020	lsm4	100	87.333	Scophthalmus_maximus
ENSHCOG00000008819	lsm4	100	82.635	ENSSDUG00000009588	lsm4	100	82.635	Seriola_dumerili
ENSHCOG00000008819	lsm4	100	82.143	ENSSLDG00000006827	lsm4	100	82.143	Seriola_lalandi_dorsalis
ENSHCOG00000008819	lsm4	61	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSHCOG00000008819	lsm4	100	90.728	ENSSPAG00000011615	lsm4	100	90.728	Stegastes_partitus
ENSHCOG00000008819	lsm4	62	98.864	ENSSSCG00000034314	LSM4	99	77.372	Sus_scrofa
ENSHCOG00000008819	lsm4	100	93.007	ENSTRUG00000021737	lsm4	100	93.007	Takifugu_rubripes
ENSHCOG00000008819	lsm4	100	88.194	ENSTNIG00000010191	lsm4	100	88.194	Tetraodon_nigroviridis
ENSHCOG00000008819	lsm4	62	98.864	ENSUAMG00000000665	LSM4	82	96.970	Ursus_americanus
ENSHCOG00000008819	lsm4	62	98.864	ENSUMAG00000009013	LSM4	99	77.372	Ursus_maritimus
ENSHCOG00000008819	lsm4	61	98.851	ENSVVUG00000008136	LSM4	70	77.206	Vulpes_vulpes
ENSHCOG00000008819	lsm4	69	96.939	ENSXETG00000024933	lsm4	99	86.957	Xenopus_tropicalis
ENSHCOG00000008819	lsm4	100	94.406	ENSXMAG00000026672	lsm4	76	94.406	Xiphophorus_maculatus