EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000008918 (Gene tree)
Gene ID: 109519015
Gene Symbol: upf1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 17411 bases
Position: chrKV880061.1:2284728-2302138
Accession: 109519015
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000021761	UPF1_Zn_bind	PF09416.10	8.4e-75	1	1
ENSHCOP00000006960	UPF1_Zn_bind	PF09416.10	9.3e-75	1	1
ENSHCOP00000021761	ResIII	PF04851.15	2.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000002780	-	6101	XM_019875245	ENSHCOP00000021761	1100 (aa)	XP_019730804	UPI00094EA434
ENSHCOT00000002804	-	3102	-	ENSHCOP00000006960	1033 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000008918's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000008918's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000008918	upf1	100	93.810	ENSG00000005007	UPF1	100	91.518	Homo_sapiens
ENSHCOG00000008918	upf1	100	98.276	ENSAPOG00000010916	-	100	98.276	Acanthochromis_polyacanthus
ENSHCOG00000008918	upf1	100	92.851	ENSAPOG00000023773	upf1	100	92.780	Acanthochromis_polyacanthus
ENSHCOG00000008918	upf1	100	93.014	ENSAMEG00000011474	UPF1	100	91.030	Ailuropoda_melanoleuca
ENSHCOG00000008918	upf1	100	93.122	ENSACIG00000019949	upf1	100	93.182	Amphilophus_citrinellus
ENSHCOG00000008918	upf1	99	96.705	ENSACIG00000010985	-	100	97.661	Amphilophus_citrinellus
ENSHCOG00000008918	upf1	100	98.094	ENSAOCG00000006352	-	100	98.094	Amphiprion_ocellaris
ENSHCOG00000008918	upf1	100	92.384	ENSAOCG00000018519	upf1	100	92.480	Amphiprion_ocellaris
ENSHCOG00000008918	upf1	100	92.384	ENSAPEG00000016344	upf1	100	92.480	Amphiprion_percula
ENSHCOG00000008918	upf1	100	98.004	ENSAPEG00000006292	-	100	98.004	Amphiprion_percula
ENSHCOG00000008918	upf1	100	98.276	ENSATEG00000016606	-	100	98.276	Anabas_testudineus
ENSHCOG00000008918	upf1	100	91.778	ENSATEG00000017867	upf1	100	91.682	Anabas_testudineus
ENSHCOG00000008918	upf1	100	93.014	ENSAPLG00000009175	UPF1	100	92.891	Anas_platyrhynchos
ENSHCOG00000008918	upf1	100	91.483	ENSANAG00000024107	UPF1	95	91.350	Aotus_nancymaae
ENSHCOG00000008918	upf1	100	92.851	ENSACLG00000007181	upf1	100	92.909	Astatotilapia_calliptera
ENSHCOG00000008918	upf1	100	97.915	ENSACLG00000022630	-	100	97.915	Astatotilapia_calliptera
ENSHCOG00000008918	upf1	100	94.651	ENSAMXG00000042187	upf1	100	94.651	Astyanax_mexicanus
ENSHCOG00000008918	upf1	100	93.014	ENSBTAG00000020922	UPF1	100	91.046	Bos_taurus
ENSHCOG00000008918	upf1	80	56.989	WBGene00004880	smg-2	83	55.345	Caenorhabditis_elegans
ENSHCOG00000008918	upf1	100	92.823	ENSCJAG00000019627	UPF1	100	90.628	Callithrix_jacchus
ENSHCOG00000008918	upf1	100	93.014	ENSCAFG00000014578	UPF1	100	90.805	Canis_familiaris
ENSHCOG00000008918	upf1	100	94.004	ENSCAFG00020012347	UPF1	100	91.696	Canis_lupus_dingo
ENSHCOG00000008918	upf1	100	94.004	ENSCHIG00000011018	UPF1	100	91.943	Capra_hircus
ENSHCOG00000008918	upf1	100	92.632	ENSTSYG00000008877	UPF1	98	92.490	Carlito_syrichta
ENSHCOG00000008918	upf1	100	92.632	ENSCAPG00000005758	UPF1	95	92.490	Cavia_aperea
ENSHCOG00000008918	upf1	100	92.632	ENSCPOG00000025463	UPF1	100	91.727	Cavia_porcellus
ENSHCOG00000008918	upf1	100	93.810	ENSCCAG00000032175	UPF1	100	91.518	Cebus_capucinus
ENSHCOG00000008918	upf1	100	92.823	ENSCATG00000040306	UPF1	97	92.932	Cercocebus_atys
ENSHCOG00000008918	upf1	100	92.919	ENSCLAG00000004037	UPF1	99	92.776	Chinchilla_lanigera
ENSHCOG00000008918	upf1	100	93.810	ENSCSAG00000005276	UPF1	100	91.518	Chlorocebus_sabaeus
ENSHCOG00000008918	upf1	100	93.539	ENSCPBG00000012513	UPF1	100	91.741	Chrysemys_picta_bellii
ENSHCOG00000008918	upf1	77	79.157	ENSCING00000021399	-	99	78.312	Ciona_intestinalis
ENSHCOG00000008918	upf1	99	73.896	ENSCSAVG00000006533	-	99	73.291	Ciona_savignyi
ENSHCOG00000008918	upf1	100	92.823	ENSCANG00000029819	UPF1	97	92.681	Colobus_angolensis_palliatus
ENSHCOG00000008918	upf1	100	93.424	ENSCGRG00001021067	Upf1	100	91.570	Cricetulus_griseus_chok1gshd
ENSHCOG00000008918	upf1	100	92.440	ENSCGRG00000013480	Upf1	98	92.300	Cricetulus_griseus_crigri
ENSHCOG00000008918	upf1	100	97.636	ENSCSEG00000016159	-	100	97.636	Cynoglossus_semilaevis
ENSHCOG00000008918	upf1	100	87.840	ENSCSEG00000017239	upf1	100	87.772	Cynoglossus_semilaevis
ENSHCOG00000008918	upf1	100	97.187	ENSCVAG00000010561	upf1	100	97.187	Cyprinodon_variegatus
ENSHCOG00000008918	upf1	100	94.107	ENSDARG00000016302	upf1	100	94.107	Danio_rerio
ENSHCOG00000008918	upf1	100	90.335	ENSDORG00000009984	Upf1	95	90.209	Dipodomys_ordii
ENSHCOG00000008918	upf1	85	73.273	FBgn0030354	Upf1	81	71.058	Drosophila_melanogaster
ENSHCOG00000008918	upf1	54	86.281	ENSEBUG00000010069	upf1	96	86.612	Eptatretus_burgeri
ENSHCOG00000008918	upf1	100	94.004	ENSEASG00005006549	UPF1	100	91.943	Equus_asinus_asinus
ENSHCOG00000008918	upf1	100	94.004	ENSECAG00000010639	UPF1	100	91.943	Equus_caballus
ENSHCOG00000008918	upf1	100	94.500	ENSELUG00000012916	-	100	93.959	Esox_lucius
ENSHCOG00000008918	upf1	100	92.599	ENSELUG00000020917	upf1	100	91.877	Esox_lucius
ENSHCOG00000008918	upf1	100	93.014	ENSFCAG00000009757	UPF1	100	90.716	Felis_catus
ENSHCOG00000008918	upf1	100	93.642	ENSFALG00000009312	UPF1	96	93.416	Ficedula_albicollis
ENSHCOG00000008918	upf1	100	92.823	ENSFDAG00000014816	UPF1	99	92.681	Fukomys_damarensis
ENSHCOG00000008918	upf1	90	97.135	ENSFHEG00000016276	-	96	96.739	Fundulus_heteroclitus
ENSHCOG00000008918	upf1	100	89.559	ENSFHEG00000006428	upf1	100	88.819	Fundulus_heteroclitus
ENSHCOG00000008918	upf1	100	94.245	ENSGMOG00000007541	upf1	100	93.705	Gadus_morhua
ENSHCOG00000008918	upf1	100	94.004	ENSGALG00000003220	UPF1	100	91.592	Gallus_gallus
ENSHCOG00000008918	upf1	68	93.143	ENSGAFG00000015443	-	85	94.380	Gambusia_affinis
ENSHCOG00000008918	upf1	100	97.636	ENSGAFG00000004831	upf1	100	97.636	Gambusia_affinis
ENSHCOG00000008918	upf1	100	93.810	ENSGAGG00000022217	UPF1	100	92.335	Gopherus_agassizii
ENSHCOG00000008918	upf1	100	93.810	ENSGGOG00000002608	UPF1	99	93.660	Gorilla_gorilla
ENSHCOG00000008918	upf1	90	90.361	ENSHBUG00000014694	upf1	100	90.361	Haplochromis_burtoni
ENSHCOG00000008918	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSHCOG00000008918	upf1	100	92.632	ENSHGLG00000010900	UPF1	100	90.539	Heterocephalus_glaber_female
ENSHCOG00000008918	upf1	100	91.196	ENSHGLG00100005904	UPF1	96	91.160	Heterocephalus_glaber_male
ENSHCOG00000008918	upf1	100	94.470	ENSIPUG00000005108	UPF1	100	94.470	Ictalurus_punctatus
ENSHCOG00000008918	upf1	100	93.810	ENSSTOG00000009196	UPF1	100	91.518	Ictidomys_tridecemlineatus
ENSHCOG00000008918	upf1	100	92.057	ENSJJAG00000023151	Upf1	100	90.480	Jaculus_jaculus
ENSHCOG00000008918	upf1	100	97.641	ENSKMAG00000004962	upf1	100	97.641	Kryptolebias_marmoratus
ENSHCOG00000008918	upf1	100	91.487	ENSLBEG00000014862	upf1	100	91.585	Labrus_bergylta
ENSHCOG00000008918	upf1	100	97.461	ENSLBEG00000027848	-	100	97.461	Labrus_bergylta
ENSHCOG00000008918	upf1	68	92.624	ENSLACG00000008482	UPF1	100	93.266	Latimeria_chalumnae
ENSHCOG00000008918	upf1	100	95.191	ENSLOCG00000002072	upf1	100	94.550	Lepisosteus_oculatus
ENSHCOG00000008918	upf1	100	92.440	ENSLAFG00000014963	UPF1	100	90.434	Loxodonta_africana
ENSHCOG00000008918	upf1	100	92.823	ENSMFAG00000037748	UPF1	100	91.273	Macaca_fascicularis
ENSHCOG00000008918	upf1	100	92.823	ENSMMUG00000023286	UPF1	100	91.030	Macaca_mulatta
ENSHCOG00000008918	upf1	100	92.823	ENSMNEG00000000046	UPF1	100	91.273	Macaca_nemestrina
ENSHCOG00000008918	upf1	100	92.823	ENSMLEG00000028404	UPF1	99	92.681	Mandrillus_leucophaeus
ENSHCOG00000008918	upf1	100	92.129	ENSMAMG00000006229	upf1	100	92.218	Mastacembelus_armatus
ENSHCOG00000008918	upf1	100	97.915	ENSMAMG00000006231	-	100	97.915	Mastacembelus_armatus
ENSHCOG00000008918	upf1	100	91.950	ENSMZEG00005003489	upf1	100	91.914	Maylandia_zebra
ENSHCOG00000008918	upf1	100	97.915	ENSMZEG00005016386	-	100	97.915	Maylandia_zebra
ENSHCOG00000008918	upf1	100	92.543	ENSMGAG00000004745	UPF1	100	92.403	Meleagris_gallopavo
ENSHCOG00000008918	upf1	100	92.440	ENSMAUG00000011398	Upf1	95	92.300	Mesocricetus_auratus
ENSHCOG00000008918	upf1	100	93.810	ENSMICG00000001659	UPF1	100	91.518	Microcebus_murinus
ENSHCOG00000008918	upf1	100	92.440	ENSMOCG00000005699	Upf1	100	90.764	Microtus_ochrogaster
ENSHCOG00000008918	upf1	100	94.879	ENSMMOG00000007537	-	99	95.507	Mola_mola
ENSHCOG00000008918	upf1	100	92.273	ENSMMOG00000007881	upf1	100	92.371	Mola_mola
ENSHCOG00000008918	upf1	100	93.810	ENSMODG00000003689	UPF1	100	90.476	Monodelphis_domestica
ENSHCOG00000008918	upf1	100	96.203	ENSMALG00000018100	-	100	96.203	Monopterus_albus
ENSHCOG00000008918	upf1	100	92.273	ENSMALG00000000144	upf1	100	92.545	Monopterus_albus
ENSHCOG00000008918	upf1	100	93.327	MGP_CAROLIEiJ_G0031142	Upf1	100	91.480	Mus_caroli
ENSHCOG00000008918	upf1	100	93.327	ENSMUSG00000058301	Upf1	100	91.480	Mus_musculus
ENSHCOG00000008918	upf1	100	93.327	MGP_PahariEiJ_G0021607	Upf1	100	91.480	Mus_pahari
ENSHCOG00000008918	upf1	100	93.327	MGP_SPRETEiJ_G0032260	Upf1	100	91.480	Mus_spretus
ENSHCOG00000008918	upf1	100	94.004	ENSMPUG00000015516	UPF1	100	91.696	Mustela_putorius_furo
ENSHCOG00000008918	upf1	100	93.810	ENSMLUG00000012122	UPF1	99	91.487	Myotis_lucifugus
ENSHCOG00000008918	upf1	100	92.153	ENSNGAG00000024107	Upf1	100	90.168	Nannospalax_galili
ENSHCOG00000008918	upf1	100	95.950	ENSNBRG00000022069	-	100	96.896	Neolamprologus_brichardi
ENSHCOG00000008918	upf1	100	90.950	ENSNBRG00000000670	upf1	100	91.000	Neolamprologus_brichardi
ENSHCOG00000008918	upf1	100	86.986	ENSNLEG00000006062	UPF1	99	86.882	Nomascus_leucogenys
ENSHCOG00000008918	upf1	83	87.891	ENSMEUG00000014146	-	83	86.693	Notamacropus_eugenii
ENSHCOG00000008918	upf1	100	86.750	ENSOPRG00000014018	UPF1	99	86.744	Ochotona_princeps
ENSHCOG00000008918	upf1	100	92.823	ENSODEG00000012426	UPF1	100	91.809	Octodon_degus
ENSHCOG00000008918	upf1	100	98.005	ENSONIG00000012729	-	100	98.005	Oreochromis_niloticus
ENSHCOG00000008918	upf1	100	92.129	ENSONIG00000010452	upf1	100	92.093	Oreochromis_niloticus
ENSHCOG00000008918	upf1	100	92.639	ENSOANG00000004568	UPF1	100	91.320	Ornithorhynchus_anatinus
ENSHCOG00000008918	upf1	100	96.915	ENSORLG00000008453	upf1	100	96.915	Oryzias_latipes
ENSHCOG00000008918	upf1	100	96.827	ENSORLG00020014758	upf1	100	96.827	Oryzias_latipes_hni
ENSHCOG00000008918	upf1	100	96.827	ENSORLG00015010165	upf1	100	96.827	Oryzias_latipes_hsok
ENSHCOG00000008918	upf1	100	97.368	ENSOMEG00000003665	upf1	100	97.368	Oryzias_melastigma
ENSHCOG00000008918	upf1	100	93.907	ENSOGAG00000012866	UPF1	100	91.607	Otolemur_garnettii
ENSHCOG00000008918	upf1	96	92.361	ENSOARG00000010739	UPF1	100	89.604	Ovis_aries
ENSHCOG00000008918	upf1	100	92.823	ENSPPAG00000043884	UPF1	96	92.614	Pan_paniscus
ENSHCOG00000008918	upf1	100	93.014	ENSPPRG00000023470	UPF1	100	90.716	Panthera_pardus
ENSHCOG00000008918	upf1	100	91.973	ENSPTIG00000010159	UPF1	99	91.659	Panthera_tigris_altaica
ENSHCOG00000008918	upf1	100	92.823	ENSPTRG00000010721	UPF1	100	91.273	Pan_troglodytes
ENSHCOG00000008918	upf1	100	92.823	ENSPANG00000008847	UPF1	100	91.273	Papio_anubis
ENSHCOG00000008918	upf1	91	94.477	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSHCOG00000008918	upf1	75	91.721	ENSPSIG00000009491	UPF1	100	92.167	Pelodiscus_sinensis
ENSHCOG00000008918	upf1	100	90.950	ENSPMGG00000017327	upf1	100	90.876	Periophthalmus_magnuspinnatus
ENSHCOG00000008918	upf1	100	92.440	ENSPEMG00000001085	Upf1	100	90.675	Peromyscus_maniculatus_bairdii
ENSHCOG00000008918	upf1	100	88.910	ENSPMAG00000001206	upf1	100	87.004	Petromyzon_marinus
ENSHCOG00000008918	upf1	100	93.810	ENSPCIG00000006156	UPF1	100	91.778	Phascolarctos_cinereus
ENSHCOG00000008918	upf1	100	97.545	ENSPLAG00000016232	-	100	97.545	Poecilia_latipinna
ENSHCOG00000008918	upf1	100	91.277	ENSPLAG00000018155	-	100	90.917	Poecilia_latipinna
ENSHCOG00000008918	upf1	100	91.584	ENSPMEG00000011443	-	100	91.395	Poecilia_mexicana
ENSHCOG00000008918	upf1	100	97.457	ENSPMEG00000016319	-	100	97.457	Poecilia_mexicana
ENSHCOG00000008918	upf1	100	97.364	ENSPREG00000011247	-	100	97.364	Poecilia_reticulata
ENSHCOG00000008918	upf1	100	91.571	ENSPREG00000009940	upf1	100	91.015	Poecilia_reticulata
ENSHCOG00000008918	upf1	100	87.356	ENSPPYG00000009752	UPF1	100	86.118	Pongo_abelii
ENSHCOG00000008918	upf1	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSHCOG00000008918	upf1	100	93.014	ENSPCOG00000023813	UPF1	100	91.289	Propithecus_coquereli
ENSHCOG00000008918	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSHCOG00000008918	upf1	100	91.950	ENSPNYG00000003694	upf1	100	91.914	Pundamilia_nyererei
ENSHCOG00000008918	upf1	100	97.824	ENSPNYG00000016731	-	100	97.824	Pundamilia_nyererei
ENSHCOG00000008918	upf1	100	94.198	ENSPNAG00000025614	upf1	100	94.198	Pygocentrus_nattereri
ENSHCOG00000008918	upf1	100	93.327	ENSRNOG00000020134	Upf1	100	91.480	Rattus_norvegicus
ENSHCOG00000008918	upf1	100	90.431	ENSRBIG00000013894	UPF1	98	93.545	Rhinopithecus_bieti
ENSHCOG00000008918	upf1	100	92.823	ENSRROG00000040935	UPF1	98	93.545	Rhinopithecus_roxellana
ENSHCOG00000008918	upf1	79	56.744	YMR080C	NAM7	84	57.160	Saccharomyces_cerevisiae
ENSHCOG00000008918	upf1	100	92.823	ENSSBOG00000023632	UPF1	96	92.932	Saimiri_boliviensis_boliviensis
ENSHCOG00000008918	upf1	100	92.646	ENSSHAG00000010499	UPF1	100	92.600	Sarcophilus_harrisii
ENSHCOG00000008918	upf1	100	95.195	ENSSFOG00015021095	upf1	100	95.195	Scleropages_formosus
ENSHCOG00000008918	upf1	100	98.187	ENSSMAG00000021018	-	100	98.187	Scophthalmus_maximus
ENSHCOG00000008918	upf1	100	89.858	ENSSMAG00000005055	upf1	100	91.487	Scophthalmus_maximus
ENSHCOG00000008918	upf1	100	91.413	ENSSDUG00000013320	upf1	100	92.039	Seriola_dumerili
ENSHCOG00000008918	upf1	100	98.277	ENSSDUG00000009629	-	100	98.277	Seriola_dumerili
ENSHCOG00000008918	upf1	100	92.238	ENSSLDG00000020868	upf1	100	92.690	Seriola_lalandi_dorsalis
ENSHCOG00000008918	upf1	100	98.277	ENSSLDG00000006878	-	100	98.277	Seriola_lalandi_dorsalis
ENSHCOG00000008918	upf1	100	93.714	ENSSPUG00000010538	UPF1	100	92.079	Sphenodon_punctatus
ENSHCOG00000008918	upf1	100	90.588	ENSSPAG00000000003	upf1	100	90.727	Stegastes_partitus
ENSHCOG00000008918	upf1	100	98.183	ENSSPAG00000011521	-	100	98.183	Stegastes_partitus
ENSHCOG00000008918	upf1	100	93.907	ENSSSCG00000039301	UPF1	99	93.672	Sus_scrofa
ENSHCOG00000008918	upf1	81	88.187	ENSTGUG00000001057	UPF1	100	90.828	Taeniopygia_guttata
ENSHCOG00000008918	upf1	100	93.182	ENSTRUG00000000150	upf1	100	93.097	Takifugu_rubripes
ENSHCOG00000008918	upf1	100	96.818	ENSTRUG00000005131	-	100	96.818	Takifugu_rubripes
ENSHCOG00000008918	upf1	100	89.845	ENSTTRG00000011544	UPF1	100	88.093	Tursiops_truncatus
ENSHCOG00000008918	upf1	100	94.004	ENSUAMG00000007093	UPF1	100	91.607	Ursus_americanus
ENSHCOG00000008918	upf1	100	94.004	ENSUMAG00000006652	UPF1	99	94.197	Ursus_maritimus
ENSHCOG00000008918	upf1	100	94.004	ENSVVUG00000007797	UPF1	100	91.696	Vulpes_vulpes
ENSHCOG00000008918	upf1	100	79.580	ENSXETG00000013602	upf1	100	78.678	Xenopus_tropicalis
ENSHCOG00000008918	upf1	100	96.709	ENSXCOG00000005764	-	100	97.478	Xiphophorus_couchianus
ENSHCOG00000008918	upf1	97	91.533	ENSXCOG00000015275	-	96	91.345	Xiphophorus_couchianus
ENSHCOG00000008918	upf1	100	97.457	ENSXMAG00000002540	-	100	97.457	Xiphophorus_maculatus
ENSHCOG00000008918	upf1	100	91.909	ENSXMAG00000001703	-	100	91.727	Xiphophorus_maculatus