EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000009227 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 2974 bases
Position: chrKV880028.1:145615-148588
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000021958	SM-ATX	PF14438.6	1.8e-07	1	1
ENSHCOP00000021958	LSM14	PF12701.7	1.6e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000002300	-	306	-	ENSHCOP00000021958	101 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000009227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000009227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000009227	-	79	72.500	ENSHCOG00000004862	-	73	72.500
ENSHCOG00000009227	-	83	89.286	ENSHCOG00000001089	-	85	89.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000009227	-	85	88.372	ENSG00000257103	LSM14A	84	88.372	Homo_sapiens
ENSHCOG00000009227	-	85	87.209	ENSAPEG00000012119	lsm14aa	83	87.209	Amphiprion_percula
ENSHCOG00000009227	-	85	88.372	ENSANAG00000019299	-	84	88.372	Aotus_nancymaae
ENSHCOG00000009227	-	79	75.000	ENSANAG00000031175	-	80	75.000	Aotus_nancymaae
ENSHCOG00000009227	-	78	91.139	ENSACLG00000018221	-	78	91.139	Astatotilapia_calliptera
ENSHCOG00000009227	-	85	88.372	ENSCJAG00000010360	LSM14A	84	88.372	Callithrix_jacchus
ENSHCOG00000009227	-	85	79.070	ENSCCAG00000038098	-	85	79.070	Cebus_capucinus
ENSHCOG00000009227	-	87	72.727	ENSCCAG00000037290	-	80	72.727	Cebus_capucinus
ENSHCOG00000009227	-	85	86.047	ENSCCAG00000028536	-	86	86.047	Cebus_capucinus
ENSHCOG00000009227	-	85	88.372	ENSCSEG00000021457	lsm14aa	84	88.372	Cynoglossus_semilaevis
ENSHCOG00000009227	-	85	88.372	ENSDARG00000006600	lsm14aa	96	91.463	Danio_rerio
ENSHCOG00000009227	-	85	88.372	ENSGAGG00000016098	-	79	88.372	Gopherus_agassizii
ENSHCOG00000009227	-	85	88.372	ENSHGLG00100000160	-	68	88.372	Heterocephalus_glaber_male
ENSHCOG00000009227	-	85	86.047	ENSHGLG00100017085	-	86	86.047	Heterocephalus_glaber_male
ENSHCOG00000009227	-	85	91.860	ENSLBEG00000010487	lsm14aa	74	91.860	Labrus_bergylta
ENSHCOG00000009227	-	83	88.095	ENSMZEG00005005945	-	60	88.095	Maylandia_zebra
ENSHCOG00000009227	-	74	89.333	ENSMMOG00000016341	-	85	89.333	Mola_mola
ENSHCOG00000009227	-	85	81.395	ENSNLEG00000034705	-	70	81.395	Nomascus_leucogenys
ENSHCOG00000009227	-	83	86.905	ENSORLG00000028980	-	71	86.905	Oryzias_latipes
ENSHCOG00000009227	-	83	86.905	ENSORLG00020019931	-	71	86.905	Oryzias_latipes_hni
ENSHCOG00000009227	-	74	51.852	ENSORLG00015018292	-	76	51.852	Oryzias_latipes_hsok
ENSHCOG00000009227	-	85	84.884	ENSOMEG00000016637	-	53	84.884	Oryzias_melastigma
ENSHCOG00000009227	-	85	88.372	ENSPTRG00000040949	-	88	88.372	Pan_troglodytes
ENSHCOG00000009227	-	76	89.610	ENSPMGG00000007198	-	72	89.610	Periophthalmus_magnuspinnatus
ENSHCOG00000009227	-	83	90.476	ENSPMGG00000000220	lsm14aa	81	90.476	Periophthalmus_magnuspinnatus
ENSHCOG00000009227	-	73	87.838	ENSPCOG00000016240	-	79	87.838	Propithecus_coquereli
ENSHCOG00000009227	-	84	88.235	ENSSBOG00000020141	-	84	87.209	Saimiri_boliviensis_boliviensis
ENSHCOG00000009227	-	82	78.313	ENSSBOG00000021178	-	57	78.313	Saimiri_boliviensis_boliviensis
ENSHCOG00000009227	-	93	70.213	ENSSBOG00000023312	-	84	74.419	Saimiri_boliviensis_boliviensis
ENSHCOG00000009227	-	76	93.506	ENSTRUG00000024267	-	53	93.506	Takifugu_rubripes
ENSHCOG00000009227	-	85	88.372	ENSUAMG00000017314	LSM14A	75	88.372	Ursus_americanus
ENSHCOG00000009227	-	85	65.116	ENSUMAG00000004345	-	89	65.116	Ursus_maritimus