EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000009270 (Gene tree)
Gene ID
109528470
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
8684 bases
Position
chrKV880338.1:1155090-1163773
Accession
109528470
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000021973PABPPF00658.186.8e-2811
ENSHCOP00000007274PABPPF00658.187.5e-2811
ENSHCOP00000021973RRM_5PF13893.61.1e-0912
ENSHCOP00000021973RRM_5PF13893.61.1e-0922
ENSHCOP00000007274RRM_5PF13893.62.4e-0912
ENSHCOP00000007274RRM_5PF13893.62.4e-0922
ENSHCOP00000021973RRM_1PF00076.221.8e-8814
ENSHCOP00000021973RRM_1PF00076.221.8e-8824
ENSHCOP00000021973RRM_1PF00076.221.8e-8834
ENSHCOP00000021973RRM_1PF00076.221.8e-8844
ENSHCOP00000007274RRM_1PF00076.222e-8114
ENSHCOP00000007274RRM_1PF00076.222e-8124
ENSHCOP00000007274RRM_1PF00076.222e-8134
ENSHCOP00000007274RRM_1PF00076.222e-8144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000002272-1821XM_019891126ENSHCOP00000007274600 (aa)XP_019746685-
ENSHCOT00000002258-1713-ENSHCOP00000021973570 (aa)--
Gene Model
Click here to download ENSHCOG00000009270's gene model file
Pathways
Pathway IDPathway NameSource
hcq03013RNA transportKEGG
hcq03015mRNA surveillance pathwayKEGG
hcq03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000009270's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000009270pabpc1l6531.579ENSHCOG00000002490elavl49131.677
ENSHCOG00000009270pabpc1l9965.954ENSHCOG00000012694pabpc49765.776
ENSHCOG00000009270pabpc1l9964.858ENSHCOG00000003175pabpc1b9964.858
ENSHCOG00000009270pabpc1l6337.079ENSHCOG00000015240elavl1a9637.079
ENSHCOG00000009270pabpc1l5937.209ENSHCOG00000011353-5937.209
ENSHCOG00000009270pabpc1l7230.108ENSHCOG00000005356-8030.108
ENSHCOG00000009270pabpc1l6433.333ENSHCOG00000020439-8533.766
ENSHCOG00000009270pabpc1l9966.939ENSHCOG00000013502pabpc1a9866.188
ENSHCOG00000009270pabpc1l6331.061ENSHCOG00000015894elavl39031.061
ENSHCOG00000009270pabpc1l6631.193ENSHCOG00000019929rbms2b5231.193
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000009270pabpc1l9967.488ENSG00000101104PABPC1L9877.778Homo_sapiens
ENSHCOG00000009270pabpc1l9980.602ENSAPOG00000010842pabpc1l9981.104Acanthochromis_polyacanthus
ENSHCOG00000009270pabpc1l8878.019ENSAMEG00000004099PABPC1L9962.761Ailuropoda_melanoleuca
ENSHCOG00000009270pabpc1l10087.411ENSACIG00000021004-10087.411Amphilophus_citrinellus
ENSHCOG00000009270pabpc1l10083.361ENSAOCG00000006167-9983.860Amphiprion_ocellaris
ENSHCOG00000009270pabpc1l10082.500ENSAPEG00000010558-10087.640Amphiprion_percula
ENSHCOG00000009270pabpc1l10084.411ENSATEG00000007428pabpc1l9985.240Anabas_testudineus
ENSHCOG00000009270pabpc1l9969.294ENSAPLG00000008415PABPC1L9969.752Anas_platyrhynchos
ENSHCOG00000009270pabpc1l9970.675ENSACAG00000011841PABPC1L9870.675Anolis_carolinensis
ENSHCOG00000009270pabpc1l9967.159ENSANAG00000026826PABPC1L9967.159Aotus_nancymaae
ENSHCOG00000009270pabpc1l10087.188ENSACLG00000024791pabpc1l9987.188Astatotilapia_calliptera
ENSHCOG00000009270pabpc1l10077.280ENSAMXG00000013552pabpc1l9977.280Astyanax_mexicanus
ENSHCOG00000009270pabpc1l6886.905ENSBTAG00000055300-10086.905Bos_taurus
ENSHCOG00000009270pabpc1l7161.348ENSBTAG00000016849PABPC1L8761.348Bos_taurus
ENSHCOG00000009270pabpc1l6478.736ENSCJAG00000038506-10078.736Callithrix_jacchus
ENSHCOG00000009270pabpc1l9966.995ENSCJAG00000017628PABPC1L9966.995Callithrix_jacchus
ENSHCOG00000009270pabpc1l9778.450ENSCAFG00000009573PABPC1L8878.450Canis_familiaris
ENSHCOG00000009270pabpc1l9968.000ENSCAFG00020013828PABPC1L9967.434Canis_lupus_dingo
ENSHCOG00000009270pabpc1l9867.288ENSCHIG00000025759PABPC1L9167.119Capra_hircus
ENSHCOG00000009270pabpc1l9966.777ENSTSYG00000006645PABPC1L9966.721Carlito_syrichta
ENSHCOG00000009270pabpc1l9862.069ENSCAPG00000014519PABPC1L9862.069Cavia_aperea
ENSHCOG00000009270pabpc1l9964.333ENSCPOG00000013633PABPC1L9963.711Cavia_porcellus
ENSHCOG00000009270pabpc1l9967.273ENSCCAG00000023338PABPC1L9967.273Cebus_capucinus
ENSHCOG00000009270pabpc1l9967.652ENSCATG00000034065PABPC1L9967.987Cercocebus_atys
ENSHCOG00000009270pabpc1l9963.667ENSCLAG00000005298PABPC1L9963.711Chinchilla_lanigera
ENSHCOG00000009270pabpc1l9967.652ENSCSAG00000014242PABPC1L9967.987Chlorocebus_sabaeus
ENSHCOG00000009270pabpc1l7380.529ENSCPBG00000017755-9878.125Chrysemys_picta_bellii
ENSHCOG00000009270pabpc1l6081.679ENSCPBG00000007810-9181.679Chrysemys_picta_bellii
ENSHCOG00000009270pabpc1l8270.213ENSCING00000002796-9750.098Ciona_intestinalis
ENSHCOG00000009270pabpc1l10060.000ENSCSAVG00000004246-9768.992Ciona_savignyi
ENSHCOG00000009270pabpc1l9668.365ENSCSAVG00000003102-10081.879Ciona_savignyi
ENSHCOG00000009270pabpc1l9965.296ENSCANG00000037530PABPC1L9965.289Colobus_angolensis_palliatus
ENSHCOG00000009270pabpc1l9961.157ENSCGRG00001021938Pabpc1l9861.157Cricetulus_griseus_chok1gshd
ENSHCOG00000009270pabpc1l9961.157ENSCGRG00000007946Pabpc1l9861.157Cricetulus_griseus_crigri
ENSHCOG00000009270pabpc1l9981.898ENSCSEG00000021295pabpc1l9981.371Cynoglossus_semilaevis
ENSHCOG00000009270pabpc1l10085.192ENSCVAG00000015943-9996.923Cyprinodon_variegatus
ENSHCOG00000009270pabpc1l9975.914ENSDARG00000002597pabpc1l8893.077Danio_rerio
ENSHCOG00000009270pabpc1l9968.781ENSDNOG00000048450PABPC1L9868.781Dasypus_novemcinctus
ENSHCOG00000009270pabpc1l9964.500ENSDORG00000001067Pabpc1l9964.086Dipodomys_ordii
ENSHCOG00000009270pabpc1l9475.566ENSETEG00000009969PABPC1L6975.566Echinops_telfairi
ENSHCOG00000009270pabpc1l6884.524ENSEASG00005023408-10084.524Equus_asinus_asinus
ENSHCOG00000009270pabpc1l5576.582ENSEASG00005023407-7966.332Equus_asinus_asinus
ENSHCOG00000009270pabpc1l6575.258ENSECAG00000040139-8468.644Equus_caballus
ENSHCOG00000009270pabpc1l9965.829ENSEEUG00000005978PABPC1L9965.232Erinaceus_europaeus
ENSHCOG00000009270pabpc1l10079.139ENSELUG00000001811pabpc1l9684.634Esox_lucius
ENSHCOG00000009270pabpc1l9967.780ENSFCAG00000011692PABPC1L9966.997Felis_catus
ENSHCOG00000009270pabpc1l8469.685ENSFALG00000005372PABPC1L9168.061Ficedula_albicollis
ENSHCOG00000009270pabpc1l9966.269ENSFDAG00000008291PABPC1L9865.928Fukomys_damarensis
ENSHCOG00000009270pabpc1l10084.333ENSFHEG00000003398pabpc1l9984.333Fundulus_heteroclitus
ENSHCOG00000009270pabpc1l9981.198ENSGMOG00000004437pabpc1l9881.198Gadus_morhua
ENSHCOG00000009270pabpc1l9975.952ENSGALG00000004123PABPC1L9780.000Gallus_gallus
ENSHCOG00000009270pabpc1l10080.727ENSGAFG00000021057pabpc1l9980.727Gambusia_affinis
ENSHCOG00000009270pabpc1l9984.027ENSGACG00000002792pabpc1l9984.027Gasterosteus_aculeatus
ENSHCOG00000009270pabpc1l9976.134ENSGAGG00000000589PABPC1L9776.134Gopherus_agassizii
ENSHCOG00000009270pabpc1l9967.488ENSGGOG00000004584PABPC1L9967.603Gorilla_gorilla
ENSHCOG00000009270pabpc1l10087.022ENSHBUG00000006134pabpc1l9987.022Haplochromis_burtoni
ENSHCOG00000009270pabpc1l9964.833ENSHGLG00000008434PABPC1L9964.073Heterocephalus_glaber_female
ENSHCOG00000009270pabpc1l9964.833ENSHGLG00100012151PABPC1L9964.073Heterocephalus_glaber_male
ENSHCOG00000009270pabpc1l6384.270ENSHGLG00100019506-10084.270Heterocephalus_glaber_male
ENSHCOG00000009270pabpc1l6460.221ENSIPUG00000006760-9160.221Ictalurus_punctatus
ENSHCOG00000009270pabpc1l10076.285ENSIPUG00000012602pabpc1l10075.433Ictalurus_punctatus
ENSHCOG00000009270pabpc1l6458.462ENSIPUG00000006780-9358.462Ictalurus_punctatus
ENSHCOG00000009270pabpc1l9967.000ENSSTOG00000003739PABPC1L9966.502Ictidomys_tridecemlineatus
ENSHCOG00000009270pabpc1l9953.476ENSJJAG00000022406Pabpc1l9853.476Jaculus_jaculus
ENSHCOG00000009270pabpc1l10083.833ENSKMAG00000016847pabpc1l9983.833Kryptolebias_marmoratus
ENSHCOG00000009270pabpc1l10086.689ENSLBEG00000010084pabpc1l9986.689Labrus_bergylta
ENSHCOG00000009270pabpc1l9970.540ENSLACG00000005762PABPC1L9772.179Latimeria_chalumnae
ENSHCOG00000009270pabpc1l9977.851ENSLOCG00000007519pabpc1l9877.851Lepisosteus_oculatus
ENSHCOG00000009270pabpc1l9966.121ENSLAFG00000003553PABPC1L9965.385Loxodonta_africana
ENSHCOG00000009270pabpc1l9967.642ENSMFAG00000040365PABPC1L9967.974Macaca_fascicularis
ENSHCOG00000009270pabpc1l9966.944ENSMNEG00000032298PABPC1L9966.612Macaca_nemestrina
ENSHCOG00000009270pabpc1l9967.652ENSMLEG00000043139PABPC1L9967.987Mandrillus_leucophaeus
ENSHCOG00000009270pabpc1l9786.919ENSMAMG00000011854pabpc1l9786.919Mastacembelus_armatus
ENSHCOG00000009270pabpc1l10087.188ENSMZEG00005023713pabpc1l9987.188Maylandia_zebra
ENSHCOG00000009270pabpc1l9969.983ENSMGAG00000003674PABPC1L9869.983Meleagris_gallopavo
ENSHCOG00000009270pabpc1l9961.020ENSMOCG00000013186Pabpc1l9861.020Microtus_ochrogaster
ENSHCOG00000009270pabpc1l9984.975ENSMMOG00000020574-9095.385Mola_mola
ENSHCOG00000009270pabpc1l9768.297ENSMODG00000016198PABPC1L9968.297Monodelphis_domestica
ENSHCOG00000009270pabpc1l9785.567ENSMALG00000021622pabpc1l9985.567Monopterus_albus
ENSHCOG00000009270pabpc1l9961.398MGP_CAROLIEiJ_G0024627Pabpc1l9961.398Mus_caroli
ENSHCOG00000009270pabpc1l9961.730ENSMUSG00000054582Pabpc1l9961.730Mus_musculus
ENSHCOG00000009270pabpc1l10060.586MGP_PahariEiJ_G0026071Pabpc1l10060.098Mus_pahari
ENSHCOG00000009270pabpc1l9961.398MGP_SPRETEiJ_G0025549Pabpc1l9961.398Mus_spretus
ENSHCOG00000009270pabpc1l9967.169ENSMPUG00000017646PABPC1L9966.503Mustela_putorius_furo
ENSHCOG00000009270pabpc1l9863.387ENSMLUG00000006324PABPC1L9863.387Myotis_lucifugus
ENSHCOG00000009270pabpc1l9962.706ENSNGAG00000010458Pabpc1l9961.614Nannospalax_galili
ENSHCOG00000009270pabpc1l10088.836ENSNBRG00000016633pabpc1l10088.836Neolamprologus_brichardi
ENSHCOG00000009270pabpc1l8964.954ENSMEUG00000007905-8964.587Notamacropus_eugenii
ENSHCOG00000009270pabpc1l9966.069ENSOPRG00000011846PABPC1L9966.069Ochotona_princeps
ENSHCOG00000009270pabpc1l9962.543ENSODEG00000015482PABPC1L9862.543Octodon_degus
ENSHCOG00000009270pabpc1l6278.750ENSODEG00000002920-9778.750Octodon_degus
ENSHCOG00000009270pabpc1l10087.354ENSONIG00000017314pabpc1l9987.354Oreochromis_niloticus
ENSHCOG00000009270pabpc1l9059.375ENSOANG00000015793-9959.375Ornithorhynchus_anatinus
ENSHCOG00000009270pabpc1l9962.675ENSOCUG00000003005PABPC1L8776.136Oryctolagus_cuniculus
ENSHCOG00000009270pabpc1l10085.047ENSORLG00000010322pabpc1l10085.047Oryzias_latipes
ENSHCOG00000009270pabpc1l10085.047ENSORLG00020021193pabpc1l10085.047Oryzias_latipes_hni
ENSHCOG00000009270pabpc1l10085.047ENSORLG00015017018pabpc1l10085.047Oryzias_latipes_hsok
ENSHCOG00000009270pabpc1l10080.635ENSOMEG00000010789pabpc1l9980.635Oryzias_melastigma
ENSHCOG00000009270pabpc1l9966.722ENSOGAG00000032999PABPC1L9965.751Otolemur_garnettii
ENSHCOG00000009270pabpc1l9966.667ENSOARG00000004578PABPC1L9966.502Ovis_aries
ENSHCOG00000009270pabpc1l9967.323ENSPPAG00000039677PABPC1L9967.657Pan_paniscus
ENSHCOG00000009270pabpc1l6868.210ENSPPRG00000019327-9868.210Panthera_pardus
ENSHCOG00000009270pabpc1l9967.780ENSPTIG00000006524PABPC1L9967.780Panthera_tigris_altaica
ENSHCOG00000009270pabpc1l6877.469ENSPTRG00000013531PABPC1L9877.469Pan_troglodytes
ENSHCOG00000009270pabpc1l9967.652ENSPANG00000018788PABPC1L9967.987Papio_anubis
ENSHCOG00000009270pabpc1l6582.443ENSPKIG00000016810-9382.443Paramormyrops_kingsleyae
ENSHCOG00000009270pabpc1l10076.987ENSPKIG00000007322pabpc1l9976.987Paramormyrops_kingsleyae
ENSHCOG00000009270pabpc1l7380.529ENSPSIG00000013289PABPC1L9980.529Pelodiscus_sinensis
ENSHCOG00000009270pabpc1l6895.455ENSPMGG00000023117pabpc1l9791.628Periophthalmus_magnuspinnatus
ENSHCOG00000009270pabpc1l5691.358ENSPMGG00000023121-9183.590Periophthalmus_magnuspinnatus
ENSHCOG00000009270pabpc1l9959.901ENSPEMG00000020671Pabpc1l9860.561Peromyscus_maniculatus_bairdii
ENSHCOG00000009270pabpc1l10085.025ENSPFOG00000013241pabpc1l9985.025Poecilia_formosa
ENSHCOG00000009270pabpc1l6896.154ENSPLAG00000023686-9296.154Poecilia_latipinna
ENSHCOG00000009270pabpc1l10084.859ENSPLAG00000017490-9984.859Poecilia_latipinna
ENSHCOG00000009270pabpc1l6896.154ENSPMEG00000009185-8896.154Poecilia_mexicana
ENSHCOG00000009270pabpc1l10085.025ENSPMEG00000007677pabpc1l9985.025Poecilia_mexicana
ENSHCOG00000009270pabpc1l7291.505ENSPREG00000015886pabpc1l10091.505Poecilia_reticulata
ENSHCOG00000009270pabpc1l9967.617ENSPPYG00000011042PABPC1L9967.822Pongo_abelii
ENSHCOG00000009270pabpc1l6685.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSHCOG00000009270pabpc1l9966.110ENSPCOG00000020630PABPC1L9966.007Propithecus_coquereli
ENSHCOG00000009270pabpc1l9965.950ENSPVAG00000012663PABPC1L9966.225Pteropus_vampyrus
ENSHCOG00000009270pabpc1l10089.074ENSPNYG00000004101pabpc1l10089.074Pundamilia_nyererei
ENSHCOG00000009270pabpc1l10070.627ENSPNAG00000021248pabpc1l9970.627Pygocentrus_nattereri
ENSHCOG00000009270pabpc1l9960.920ENSRNOG00000012750Pabpc1l9961.564Rattus_norvegicus
ENSHCOG00000009270pabpc1l9967.652ENSRBIG00000035381PABPC1L9967.987Rhinopithecus_bieti
ENSHCOG00000009270pabpc1l9967.617ENSRROG00000044498PABPC1L9967.822Rhinopithecus_roxellana
ENSHCOG00000009270pabpc1l9967.159ENSSBOG00000009532-9967.159Saimiri_boliviensis_boliviensis
ENSHCOG00000009270pabpc1l9964.358ENSSHAG00000011446PABPC1L9964.358Sarcophilus_harrisii
ENSHCOG00000009270pabpc1l10076.159ENSSFOG00015017304pabpc1l9976.159Scleropages_formosus
ENSHCOG00000009270pabpc1l10085.691ENSSMAG00000010516pabpc1l9897.674Scophthalmus_maximus
ENSHCOG00000009270pabpc1l10087.022ENSSDUG00000014743pabpc1l9987.022Seriola_dumerili
ENSHCOG00000009270pabpc1l9990.261ENSSLDG00000006981pabpc1l9894.258Seriola_lalandi_dorsalis
ENSHCOG00000009270pabpc1l9970.181ENSSPUG00000004233PABPC1L9870.181Sphenodon_punctatus
ENSHCOG00000009270pabpc1l10080.105ENSSPAG00000017137pabpc1l10080.105Stegastes_partitus
ENSHCOG00000009270pabpc1l9967.221ENSSSCG00000007382PABPC1L9967.221Sus_scrofa
ENSHCOG00000009270pabpc1l9969.180ENSTGUG00000005114PABPC1L9869.180Taeniopygia_guttata
ENSHCOG00000009270pabpc1l9784.021ENSTRUG00000011085pabpc1l9684.021Takifugu_rubripes
ENSHCOG00000009270pabpc1l9981.681ENSTNIG00000017903pabpc1l9481.681Tetraodon_nigroviridis
ENSHCOG00000009270pabpc1l9476.404ENSTBEG00000002851PABPC1L7877.740Tupaia_belangeri
ENSHCOG00000009270pabpc1l9465.157ENSTTRG00000007618PABPC1L10065.254Tursiops_truncatus
ENSHCOG00000009270pabpc1l9969.454ENSUAMG00000017682PABPC1L9868.465Ursus_americanus
ENSHCOG00000009270pabpc1l7174.581ENSUMAG00000025436PABPC1L9274.581Ursus_maritimus
ENSHCOG00000009270pabpc1l9876.285ENSVVUG00000018939PABPC1L9876.285Vulpes_vulpes
ENSHCOG00000009270pabpc1l9967.987ENSXETG00000022831pabpc1l9867.987Xenopus_tropicalis
ENSHCOG00000009270pabpc1l9988.517ENSXCOG00000005459pabpc1l9991.489Xiphophorus_couchianus
ENSHCOG00000009270pabpc1l10084.526ENSXMAG00000017135pabpc1l9984.526Xiphophorus_maculatus

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