EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000009961 (Gene tree)
Gene ID: 109528822
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 2602 bases
Position: chrKV880342.1:512215-514816
Accession: 109528822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000022342	Exo_endo_phos	PF03372.23	5.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000001309	-	1589	XM_019891825	ENSHCOP00000022342	311 (aa)	XP_019747384	UPI00094E9EF7

Gene Model

Click here to download ENSHCOG00000009961's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000009961's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000009961	apex1	99	65.723	ENSG00000100823	APEX1	99	66.144	Homo_sapiens
ENSHCOG00000009961	apex1	100	86.174	ENSAPOG00000017002	apex1	100	86.174	Acanthochromis_polyacanthus
ENSHCOG00000009961	apex1	89	69.892	ENSAMEG00000005418	APEX1	99	65.517	Ailuropoda_melanoleuca
ENSHCOG00000009961	apex1	89	89.531	ENSACIG00000010653	apex1	97	89.199	Amphilophus_citrinellus
ENSHCOG00000009961	apex1	100	87.138	ENSAOCG00000009649	apex1	100	88.103	Amphiprion_ocellaris
ENSHCOG00000009961	apex1	100	87.460	ENSAPEG00000021453	apex1	100	88.424	Amphiprion_percula
ENSHCOG00000009961	apex1	99	83.548	ENSATEG00000002883	apex1	97	86.774	Anabas_testudineus
ENSHCOG00000009961	apex1	99	68.438	ENSACAG00000008099	APEX1	99	69.841	Anolis_carolinensis
ENSHCOG00000009961	apex1	80	32.119	ENSACAG00000011201	APEX2	59	32.107	Anolis_carolinensis
ENSHCOG00000009961	apex1	89	70.609	ENSANAG00000030117	APEX1	99	66.038	Aotus_nancymaae
ENSHCOG00000009961	apex1	88	89.818	ENSACLG00000018441	apex1	100	87.460	Astatotilapia_calliptera
ENSHCOG00000009961	apex1	99	83.871	ENSAMXG00000034699	apex1	99	83.871	Astyanax_mexicanus
ENSHCOG00000009961	apex1	99	64.353	ENSBTAG00000002745	APEX1	99	64.984	Bos_taurus
ENSHCOG00000009961	apex1	85	45.318	WBGene00001372	exo-3	92	45.318	Caenorhabditis_elegans
ENSHCOG00000009961	apex1	89	70.968	ENSCJAG00000009726	APEX1	99	66.352	Callithrix_jacchus
ENSHCOG00000009961	apex1	99	67.089	ENSCAFG00000032033	APEX1	99	66.771	Canis_familiaris
ENSHCOG00000009961	apex1	99	67.089	ENSCAFG00020014377	-	99	66.771	Canis_lupus_dingo
ENSHCOG00000009961	apex1	53	60.000	ENSCAFG00020023002	-	94	59.538	Canis_lupus_dingo
ENSHCOG00000009961	apex1	99	64.353	ENSCHIG00000007298	-	99	64.984	Capra_hircus
ENSHCOG00000009961	apex1	89	54.317	ENSCHIG00000014537	-	91	53.846	Capra_hircus
ENSHCOG00000009961	apex1	99	65.094	ENSTSYG00000034813	APEX1	99	65.094	Carlito_syrichta
ENSHCOG00000009961	apex1	86	64.000	ENSCAPG00000016235	APEX1	91	70.763	Cavia_aperea
ENSHCOG00000009961	apex1	99	66.246	ENSCPOG00000030909	APEX1	99	66.246	Cavia_porcellus
ENSHCOG00000009961	apex1	89	60.573	ENSCCAG00000031931	-	99	57.413	Cebus_capucinus
ENSHCOG00000009961	apex1	89	70.968	ENSCCAG00000033056	-	99	66.352	Cebus_capucinus
ENSHCOG00000009961	apex1	99	65.831	ENSCATG00000015580	APEX1	99	65.831	Cercocebus_atys
ENSHCOG00000009961	apex1	99	65.094	ENSCLAG00000001002	APEX1	99	65.094	Chinchilla_lanigera
ENSHCOG00000009961	apex1	99	65.831	ENSCSAG00000016685	-	99	65.831	Chlorocebus_sabaeus
ENSHCOG00000009961	apex1	99	65.831	ENSCSAG00000016670	-	99	65.831	Chlorocebus_sabaeus
ENSHCOG00000009961	apex1	82	30.097	ENSCPBG00000016631	APEX2	62	30.097	Chrysemys_picta_bellii
ENSHCOG00000009961	apex1	99	70.253	ENSCPBG00000009567	APEX1	99	70.253	Chrysemys_picta_bellii
ENSHCOG00000009961	apex1	100	53.376	ENSCING00000008137	-	98	53.376	Ciona_intestinalis
ENSHCOG00000009961	apex1	86	52.612	ENSCSAVG00000007144	-	100	53.876	Ciona_savignyi
ENSHCOG00000009961	apex1	99	66.144	ENSCANG00000030726	APEX1	99	66.144	Colobus_angolensis_palliatus
ENSHCOG00000009961	apex1	99	64.780	ENSCGRG00001017046	Apex1	99	64.780	Cricetulus_griseus_chok1gshd
ENSHCOG00000009961	apex1	99	64.780	ENSCGRG00000008984	Apex1	99	64.780	Cricetulus_griseus_crigri
ENSHCOG00000009961	apex1	100	85.209	ENSCSEG00000017499	apex1	99	85.209	Cynoglossus_semilaevis
ENSHCOG00000009961	apex1	100	89.389	ENSCVAG00000022075	apex1	100	89.389	Cyprinodon_variegatus
ENSHCOG00000009961	apex1	99	83.226	ENSDARG00000045843	apex1	99	83.226	Danio_rerio
ENSHCOG00000009961	apex1	99	62.264	ENSDNOG00000042234	APEX1	94	63.208	Dasypus_novemcinctus
ENSHCOG00000009961	apex1	99	65.615	ENSDORG00000001616	Apex1	99	65.615	Dipodomys_ordii
ENSHCOG00000009961	apex1	99	65.723	ENSETEG00000004855	-	99	66.038	Echinops_telfairi
ENSHCOG00000009961	apex1	76	60.504	ENSEBUG00000000622	-	92	60.504	Eptatretus_burgeri
ENSHCOG00000009961	apex1	99	65.931	ENSEASG00005017489	APEX1	73	65.931	Equus_asinus_asinus
ENSHCOG00000009961	apex1	99	65.931	ENSECAG00000022325	APEX1	81	65.931	Equus_caballus
ENSHCOG00000009961	apex1	86	69.517	ENSEEUG00000012569	APEX1	98	67.491	Erinaceus_europaeus
ENSHCOG00000009961	apex1	99	83.548	ENSELUG00000021706	apex1	99	83.548	Esox_lucius
ENSHCOG00000009961	apex1	99	66.352	ENSFCAG00000030869	APEX1	99	66.352	Felis_catus
ENSHCOG00000009961	apex1	99	66.038	ENSFDAG00000006120	APEX1	99	66.038	Fukomys_damarensis
ENSHCOG00000009961	apex1	100	87.138	ENSFHEG00000009031	apex1	83	87.781	Fundulus_heteroclitus
ENSHCOG00000009961	apex1	100	77.814	ENSGMOG00000007943	apex1	99	77.814	Gadus_morhua
ENSHCOG00000009961	apex1	100	87.138	ENSGAFG00000005311	apex1	100	87.460	Gambusia_affinis
ENSHCOG00000009961	apex1	100	87.460	ENSGACG00000019497	apex1	99	90.566	Gasterosteus_aculeatus
ENSHCOG00000009961	apex1	99	69.937	ENSGAGG00000014999	APEX1	99	70.253	Gopherus_agassizii
ENSHCOG00000009961	apex1	99	65.409	ENSGGOG00000002128	APEX1	99	65.831	Gorilla_gorilla
ENSHCOG00000009961	apex1	100	84.244	ENSHBUG00000005894	apex1	100	87.138	Haplochromis_burtoni
ENSHCOG00000009961	apex1	99	66.667	ENSHGLG00000002848	APEX1	99	66.667	Heterocephalus_glaber_female
ENSHCOG00000009961	apex1	99	66.667	ENSHGLG00100017878	APEX1	99	66.667	Heterocephalus_glaber_male
ENSHCOG00000009961	apex1	99	81.935	ENSIPUG00000005799	apex1	99	81.935	Ictalurus_punctatus
ENSHCOG00000009961	apex1	99	65.615	ENSSTOG00000010096	APEX1	99	66.352	Ictidomys_tridecemlineatus
ENSHCOG00000009961	apex1	99	57.278	ENSJJAG00000003660	-	99	57.278	Jaculus_jaculus
ENSHCOG00000009961	apex1	89	61.290	ENSJJAG00000020465	-	94	59.727	Jaculus_jaculus
ENSHCOG00000009961	apex1	99	64.151	ENSJJAG00000012067	-	99	64.151	Jaculus_jaculus
ENSHCOG00000009961	apex1	100	86.174	ENSKMAG00000021171	apex1	100	86.174	Kryptolebias_marmoratus
ENSHCOG00000009961	apex1	100	85.531	ENSLBEG00000010248	apex1	100	85.531	Labrus_bergylta
ENSHCOG00000009961	apex1	99	74.679	ENSLACG00000008617	APEX1	99	74.679	Latimeria_chalumnae
ENSHCOG00000009961	apex1	99	76.358	ENSLOCG00000015516	apex1	99	76.358	Lepisosteus_oculatus
ENSHCOG00000009961	apex1	89	70.968	ENSLAFG00000021872	APEX1	99	66.246	Loxodonta_africana
ENSHCOG00000009961	apex1	99	65.831	ENSMFAG00000002565	APEX1	99	65.831	Macaca_fascicularis
ENSHCOG00000009961	apex1	99	65.831	ENSMMUG00000048039	APEX1	99	65.831	Macaca_mulatta
ENSHCOG00000009961	apex1	99	65.831	ENSMNEG00000036944	APEX1	99	65.831	Macaca_nemestrina
ENSHCOG00000009961	apex1	99	65.831	ENSMLEG00000042125	APEX1	99	65.831	Mandrillus_leucophaeus
ENSHCOG00000009961	apex1	100	86.174	ENSMAMG00000023526	apex1	100	86.495	Mastacembelus_armatus
ENSHCOG00000009961	apex1	88	89.818	ENSMZEG00005014187	apex1	100	87.460	Maylandia_zebra
ENSHCOG00000009961	apex1	99	65.615	ENSMAUG00000013994	Apex1	99	65.615	Mesocricetus_auratus
ENSHCOG00000009961	apex1	99	65.409	ENSMICG00000043554	APEX1	99	65.409	Microcebus_murinus
ENSHCOG00000009961	apex1	99	66.139	ENSMOCG00000013721	Apex1	99	66.139	Microtus_ochrogaster
ENSHCOG00000009961	apex1	100	84.615	ENSMMOG00000010031	apex1	97	84.936	Mola_mola
ENSHCOG00000009961	apex1	89	68.817	ENSMODG00000007125	APEX1	99	64.263	Monodelphis_domestica
ENSHCOG00000009961	apex1	90	84.286	ENSMALG00000011699	apex1	79	83.276	Monopterus_albus
ENSHCOG00000009961	apex1	99	66.667	MGP_CAROLIEiJ_G0019209	Apex1	99	66.667	Mus_caroli
ENSHCOG00000009961	apex1	99	66.456	ENSMUSG00000035960	Apex1	99	66.456	Mus_musculus
ENSHCOG00000009961	apex1	89	70.758	MGP_PahariEiJ_G0030232	Apex1	99	66.772	Mus_pahari
ENSHCOG00000009961	apex1	99	66.456	MGP_SPRETEiJ_G0020101	Apex1	99	66.456	Mus_spretus
ENSHCOG00000009961	apex1	99	64.780	ENSMLUG00000028957	APEX1	99	64.780	Myotis_lucifugus
ENSHCOG00000009961	apex1	87	53.069	ENSNGAG00000021748	-	85	53.069	Nannospalax_galili
ENSHCOG00000009961	apex1	99	66.038	ENSNGAG00000002725	-	99	66.038	Nannospalax_galili
ENSHCOG00000009961	apex1	88	89.818	ENSNBRG00000005334	apex1	91	87.460	Neolamprologus_brichardi
ENSHCOG00000009961	apex1	99	65.409	ENSNLEG00000010839	APEX1	99	65.595	Nomascus_leucogenys
ENSHCOG00000009961	apex1	99	65.176	ENSMEUG00000014519	APEX1	99	65.176	Notamacropus_eugenii
ENSHCOG00000009961	apex1	99	64.762	ENSOPRG00000014029	APEX1	99	64.762	Ochotona_princeps
ENSHCOG00000009961	apex1	81	56.349	ENSODEG00000004777	-	83	56.349	Octodon_degus
ENSHCOG00000009961	apex1	99	51.863	ENSODEG00000006583	-	99	51.863	Octodon_degus
ENSHCOG00000009961	apex1	99	65.723	ENSODEG00000001703	-	99	65.723	Octodon_degus
ENSHCOG00000009961	apex1	89	89.892	ENSONIG00000012089	apex1	100	87.460	Oreochromis_niloticus
ENSHCOG00000009961	apex1	88	68.727	ENSOANG00000008836	APEX1	80	64.596	Ornithorhynchus_anatinus
ENSHCOG00000009961	apex1	99	66.038	ENSOCUG00000005022	APEX1	99	66.352	Oryctolagus_cuniculus
ENSHCOG00000009961	apex1	100	87.179	ENSORLG00000012378	apex1	100	89.103	Oryzias_latipes
ENSHCOG00000009961	apex1	100	87.179	ENSORLG00020021371	apex1	100	89.103	Oryzias_latipes_hni
ENSHCOG00000009961	apex1	100	87.179	ENSORLG00015020089	apex1	100	89.103	Oryzias_latipes_hsok
ENSHCOG00000009961	apex1	100	89.068	ENSOMEG00000018876	apex1	100	90.064	Oryzias_melastigma
ENSHCOG00000009961	apex1	89	62.366	ENSOGAG00000029355	-	99	60.000	Otolemur_garnettii
ENSHCOG00000009961	apex1	99	66.352	ENSOGAG00000013335	-	99	66.352	Otolemur_garnettii
ENSHCOG00000009961	apex1	86	65.799	ENSOARG00000001876	-	99	61.889	Ovis_aries
ENSHCOG00000009961	apex1	99	64.353	ENSOARG00000019740	-	99	64.984	Ovis_aries
ENSHCOG00000009961	apex1	93	56.401	ENSOARG00000014424	-	92	56.401	Ovis_aries
ENSHCOG00000009961	apex1	99	65.723	ENSPPAG00000038760	APEX1	99	66.144	Pan_paniscus
ENSHCOG00000009961	apex1	89	70.968	ENSPPRG00000011794	APEX1	99	66.352	Panthera_pardus
ENSHCOG00000009961	apex1	99	66.352	ENSPTIG00000014829	APEX1	99	66.352	Panthera_tigris_altaica
ENSHCOG00000009961	apex1	99	65.723	ENSPTRG00000006093	APEX1	99	66.144	Pan_troglodytes
ENSHCOG00000009961	apex1	99	65.831	ENSPANG00000022757	APEX1	99	65.831	Papio_anubis
ENSHCOG00000009961	apex1	89	88.043	ENSPKIG00000003504	apex1	99	84.615	Paramormyrops_kingsleyae
ENSHCOG00000009961	apex1	78	80.972	ENSPMGG00000016596	apex1	74	80.972	Periophthalmus_magnuspinnatus
ENSHCOG00000009961	apex1	99	65.094	ENSPEMG00000019097	Apex1	99	65.094	Peromyscus_maniculatus_bairdii
ENSHCOG00000009961	apex1	94	70.508	ENSPMAG00000007275	-	100	70.508	Petromyzon_marinus
ENSHCOG00000009961	apex1	89	68.459	ENSPCIG00000023274	APEX1	99	63.009	Phascolarctos_cinereus
ENSHCOG00000009961	apex1	100	86.817	ENSPFOG00000004178	apex1	100	86.817	Poecilia_formosa
ENSHCOG00000009961	apex1	100	86.495	ENSPLAG00000012779	apex1	100	86.495	Poecilia_latipinna
ENSHCOG00000009961	apex1	100	86.817	ENSPMEG00000019623	apex1	100	86.817	Poecilia_mexicana
ENSHCOG00000009961	apex1	100	85.852	ENSPREG00000014298	apex1	99	85.852	Poecilia_reticulata
ENSHCOG00000009961	apex1	99	65.723	ENSPPYG00000005565	APEX1	99	66.458	Pongo_abelii
ENSHCOG00000009961	apex1	99	64.780	ENSPCAG00000010376	APEX1	99	64.780	Procavia_capensis
ENSHCOG00000009961	apex1	99	65.723	ENSPCOG00000021564	APEX1	99	65.723	Propithecus_coquereli
ENSHCOG00000009961	apex1	99	65.312	ENSPVAG00000010736	APEX1	99	65.312	Pteropus_vampyrus
ENSHCOG00000009961	apex1	88	90.182	ENSPNYG00000023940	apex1	100	87.781	Pundamilia_nyererei
ENSHCOG00000009961	apex1	92	83.972	ENSPNAG00000020897	apex1	95	84.507	Pygocentrus_nattereri
ENSHCOG00000009961	apex1	99	66.352	ENSRNOG00000009663	Apex1	99	65.823	Rattus_norvegicus
ENSHCOG00000009961	apex1	99	66.144	ENSRBIG00000038325	APEX1	98	66.144	Rhinopithecus_bieti
ENSHCOG00000009961	apex1	89	70.968	ENSSBOG00000018921	-	99	66.352	Saimiri_boliviensis_boliviensis
ENSHCOG00000009961	apex1	99	58.199	ENSSBOG00000031372	-	99	58.199	Saimiri_boliviensis_boliviensis
ENSHCOG00000009961	apex1	99	62.195	ENSSHAG00000013524	APEX1	99	63.777	Sarcophilus_harrisii
ENSHCOG00000009961	apex1	99	80.645	ENSSFOG00015001948	apex1	99	80.645	Scleropages_formosus
ENSHCOG00000009961	apex1	100	83.492	ENSSMAG00000013348	apex1	100	85.759	Scophthalmus_maximus
ENSHCOG00000009961	apex1	100	88.103	ENSSDUG00000016377	apex1	99	88.103	Seriola_dumerili
ENSHCOG00000009961	apex1	100	88.424	ENSSLDG00000023005	apex1	100	88.424	Seriola_lalandi_dorsalis
ENSHCOG00000009961	apex1	90	73.571	ENSSPUG00000000531	APEX1	95	73.571	Sphenodon_punctatus
ENSHCOG00000009961	apex1	100	88.424	ENSSPAG00000000458	apex1	100	88.424	Stegastes_partitus
ENSHCOG00000009961	apex1	93	40.532	ENSSSCG00000039705	-	98	40.532	Sus_scrofa
ENSHCOG00000009961	apex1	99	65.723	ENSSSCG00000040060	-	99	66.981	Sus_scrofa
ENSHCOG00000009961	apex1	76	59.149	ENSTGUG00000014378	APEX1	100	59.149	Taeniopygia_guttata
ENSHCOG00000009961	apex1	100	80.511	ENSTRUG00000004268	apex1	95	84.665	Takifugu_rubripes
ENSHCOG00000009961	apex1	100	85.531	ENSTNIG00000005778	apex1	100	85.531	Tetraodon_nigroviridis
ENSHCOG00000009961	apex1	99	62.579	ENSTBEG00000006405	APEX1	99	63.522	Tupaia_belangeri
ENSHCOG00000009961	apex1	76	69.362	ENSTTRG00000007860	APEX1	100	69.362	Tursiops_truncatus
ENSHCOG00000009961	apex1	99	65.517	ENSUAMG00000010457	APEX1	99	65.517	Ursus_americanus
ENSHCOG00000009961	apex1	99	65.517	ENSUMAG00000009178	APEX1	99	65.517	Ursus_maritimus
ENSHCOG00000009961	apex1	76	65.106	ENSVPAG00000005083	APEX1	100	65.106	Vicugna_pacos
ENSHCOG00000009961	apex1	99	66.772	ENSVVUG00000009010	APEX1	99	66.458	Vulpes_vulpes
ENSHCOG00000009961	apex1	99	68.153	ENSXETG00000024773	apex1	99	68.471	Xenopus_tropicalis
ENSHCOG00000009961	apex1	100	86.817	ENSXCOG00000015233	apex1	99	86.817	Xiphophorus_couchianus
ENSHCOG00000009961	apex1	100	86.817	ENSXMAG00000006195	apex1	100	86.817	Xiphophorus_maculatus