EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000010072 (Gene tree)
Gene ID: 109524444
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 5869 bases
Position: chrKV880218.1:843445-849313
Accession: 109524444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000007943	Clp1	PF06807.14	2.9e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000001145	-	2304	XM_019884348	ENSHCOP00000007943	441 (aa)	XP_019739907	UPI00094E62B5

Gene Model

Click here to download ENSHCOG00000010072's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000010072's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000010072	clp1	99	77.011	ENSG00000172409	CLP1	99	77.011	Homo_sapiens
ENSHCOG00000010072	clp1	100	95.011	ENSAPOG00000008242	clp1	100	95.011	Acanthochromis_polyacanthus
ENSHCOG00000010072	clp1	99	76.322	ENSAMEG00000014551	CLP1	99	76.322	Ailuropoda_melanoleuca
ENSHCOG00000010072	clp1	100	94.331	ENSACIG00000006310	clp1	99	94.331	Amphilophus_citrinellus
ENSHCOG00000010072	clp1	100	95.238	ENSAOCG00000010681	clp1	100	95.238	Amphiprion_ocellaris
ENSHCOG00000010072	clp1	100	95.238	ENSAPEG00000012165	clp1	99	96.244	Amphiprion_percula
ENSHCOG00000010072	clp1	100	95.465	ENSATEG00000012374	clp1	100	95.465	Anabas_testudineus
ENSHCOG00000010072	clp1	99	76.552	ENSACAG00000007139	CLP1	99	76.552	Anolis_carolinensis
ENSHCOG00000010072	clp1	99	77.011	ENSANAG00000034935	CLP1	99	77.011	Aotus_nancymaae
ENSHCOG00000010072	clp1	100	94.558	ENSACLG00000013573	clp1	100	94.558	Astatotilapia_calliptera
ENSHCOG00000010072	clp1	95	87.972	ENSAMXG00000014194	clp1	98	87.972	Astyanax_mexicanus
ENSHCOG00000010072	clp1	99	76.552	ENSBTAG00000006493	CLP1	99	76.552	Bos_taurus
ENSHCOG00000010072	clp1	95	48.000	WBGene00010304	clpf-1	97	48.000	Caenorhabditis_elegans
ENSHCOG00000010072	clp1	99	77.011	ENSCJAG00000008748	CLP1	99	77.011	Callithrix_jacchus
ENSHCOG00000010072	clp1	99	76.552	ENSCAFG00000007815	CLP1	99	76.552	Canis_familiaris
ENSHCOG00000010072	clp1	99	76.552	ENSCAFG00020000903	CLP1	99	76.552	Canis_lupus_dingo
ENSHCOG00000010072	clp1	99	76.782	ENSCHIG00000023497	CLP1	99	76.782	Capra_hircus
ENSHCOG00000010072	clp1	99	76.552	ENSTSYG00000006824	CLP1	99	76.552	Carlito_syrichta
ENSHCOG00000010072	clp1	99	76.782	ENSCAPG00000009703	CLP1	99	76.782	Cavia_aperea
ENSHCOG00000010072	clp1	96	78.066	ENSCPOG00000012554	CLP1	99	78.066	Cavia_porcellus
ENSHCOG00000010072	clp1	99	77.011	ENSCCAG00000031957	CLP1	99	77.011	Cebus_capucinus
ENSHCOG00000010072	clp1	99	77.011	ENSCATG00000044628	CLP1	99	77.011	Cercocebus_atys
ENSHCOG00000010072	clp1	99	76.782	ENSCLAG00000004094	CLP1	99	76.782	Chinchilla_lanigera
ENSHCOG00000010072	clp1	99	77.011	ENSCSAG00000005994	CLP1	99	77.011	Chlorocebus_sabaeus
ENSHCOG00000010072	clp1	99	76.092	ENSCPBG00000016843	CLP1	99	76.092	Chrysemys_picta_bellii
ENSHCOG00000010072	clp1	95	63.789	ENSCING00000003779	-	95	63.789	Ciona_intestinalis
ENSHCOG00000010072	clp1	95	63.309	ENSCSAVG00000003437	-	96	63.309	Ciona_savignyi
ENSHCOG00000010072	clp1	99	77.011	ENSCANG00000034335	CLP1	99	77.011	Colobus_angolensis_palliatus
ENSHCOG00000010072	clp1	99	76.322	ENSCGRG00001002227	CLP1	99	76.322	Cricetulus_griseus_chok1gshd
ENSHCOG00000010072	clp1	99	76.322	ENSCGRG00000004328	CLP1	99	76.322	Cricetulus_griseus_crigri
ENSHCOG00000010072	clp1	100	90.930	ENSCSEG00000008614	clp1	100	90.930	Cynoglossus_semilaevis
ENSHCOG00000010072	clp1	100	93.651	ENSCVAG00000020101	clp1	100	93.651	Cyprinodon_variegatus
ENSHCOG00000010072	clp1	95	87.678	ENSDARG00000063663	clp1	100	84.529	Danio_rerio
ENSHCOG00000010072	clp1	98	76.674	ENSDNOG00000042415	CLP1	89	76.674	Dasypus_novemcinctus
ENSHCOG00000010072	clp1	99	76.552	ENSDORG00000014685	Clp1	99	76.552	Dipodomys_ordii
ENSHCOG00000010072	clp1	95	54.502	FBgn0033842	cbc	98	54.502	Drosophila_melanogaster
ENSHCOG00000010072	clp1	99	76.782	ENSETEG00000003009	CLP1	99	76.782	Echinops_telfairi
ENSHCOG00000010072	clp1	98	65.661	ENSEBUG00000011648	clp1	99	65.661	Eptatretus_burgeri
ENSHCOG00000010072	clp1	99	77.241	ENSEASG00005002093	CLP1	99	77.241	Equus_asinus_asinus
ENSHCOG00000010072	clp1	99	77.241	ENSECAG00000011597	CLP1	99	77.241	Equus_caballus
ENSHCOG00000010072	clp1	99	76.092	ENSEEUG00000012771	CLP1	99	76.092	Erinaceus_europaeus
ENSHCOG00000010072	clp1	100	86.771	ENSELUG00000024048	clp1	100	86.996	Esox_lucius
ENSHCOG00000010072	clp1	99	76.782	ENSFCAG00000006633	CLP1	99	76.782	Felis_catus
ENSHCOG00000010072	clp1	98	76.852	ENSFALG00000011145	CLP1	99	76.852	Ficedula_albicollis
ENSHCOG00000010072	clp1	99	76.782	ENSFDAG00000000234	CLP1	99	76.782	Fukomys_damarensis
ENSHCOG00000010072	clp1	100	93.424	ENSFHEG00000014760	CLP1	100	93.424	Fundulus_heteroclitus
ENSHCOG00000010072	clp1	100	90.930	ENSGMOG00000019340	clp1	100	90.930	Gadus_morhua
ENSHCOG00000010072	clp1	98	76.620	ENSGALG00000007370	CLP1	99	76.620	Gallus_gallus
ENSHCOG00000010072	clp1	100	93.424	ENSGAFG00000003020	clp1	100	93.424	Gambusia_affinis
ENSHCOG00000010072	clp1	100	95.238	ENSGACG00000017832	clp1	100	95.238	Gasterosteus_aculeatus
ENSHCOG00000010072	clp1	99	76.092	ENSGAGG00000013279	CLP1	99	76.092	Gopherus_agassizii
ENSHCOG00000010072	clp1	99	77.011	ENSGGOG00000023006	CLP1	99	77.011	Gorilla_gorilla
ENSHCOG00000010072	clp1	100	94.785	ENSHBUG00000010436	clp1	100	94.785	Haplochromis_burtoni
ENSHCOG00000010072	clp1	99	76.782	ENSHGLG00000009914	CLP1	99	76.782	Heterocephalus_glaber_female
ENSHCOG00000010072	clp1	99	76.782	ENSHGLG00100006105	CLP1	99	76.782	Heterocephalus_glaber_male
ENSHCOG00000010072	clp1	100	84.187	ENSIPUG00000016238	clp1	99	84.633	Ictalurus_punctatus
ENSHCOG00000010072	clp1	99	76.782	ENSSTOG00000029257	CLP1	99	76.782	Ictidomys_tridecemlineatus
ENSHCOG00000010072	clp1	99	76.322	ENSJJAG00000023691	Clp1	99	76.322	Jaculus_jaculus
ENSHCOG00000010072	clp1	100	93.197	ENSKMAG00000011990	clp1	100	93.197	Kryptolebias_marmoratus
ENSHCOG00000010072	clp1	100	95.238	ENSLBEG00000010201	clp1	100	95.238	Labrus_bergylta
ENSHCOG00000010072	clp1	96	76.415	ENSLACG00000003160	CLP1	98	76.415	Latimeria_chalumnae
ENSHCOG00000010072	clp1	71	86.957	ENSLOCG00000008074	clp1	100	86.957	Lepisosteus_oculatus
ENSHCOG00000010072	clp1	99	76.552	ENSLAFG00000014907	CLP1	99	76.552	Loxodonta_africana
ENSHCOG00000010072	clp1	99	77.011	ENSMFAG00000046074	CLP1	99	77.011	Macaca_fascicularis
ENSHCOG00000010072	clp1	99	76.310	ENSMMUG00000038007	CLP1	99	76.310	Macaca_mulatta
ENSHCOG00000010072	clp1	99	77.011	ENSMNEG00000000259	CLP1	99	77.011	Macaca_nemestrina
ENSHCOG00000010072	clp1	99	77.011	ENSMLEG00000043556	CLP1	99	77.011	Mandrillus_leucophaeus
ENSHCOG00000010072	clp1	100	95.465	ENSMAMG00000002149	clp1	100	95.465	Mastacembelus_armatus
ENSHCOG00000010072	clp1	100	94.558	ENSMZEG00005002850	clp1	100	94.558	Maylandia_zebra
ENSHCOG00000010072	clp1	98	76.620	ENSMGAG00000009643	CLP1	99	76.620	Meleagris_gallopavo
ENSHCOG00000010072	clp1	99	76.092	ENSMAUG00000016261	Clp1	99	76.092	Mesocricetus_auratus
ENSHCOG00000010072	clp1	99	76.552	ENSMICG00000004895	CLP1	99	76.552	Microcebus_murinus
ENSHCOG00000010072	clp1	99	76.552	ENSMOCG00000005498	Clp1	99	76.552	Microtus_ochrogaster
ENSHCOG00000010072	clp1	100	93.424	ENSMMOG00000003229	clp1	100	93.424	Mola_mola
ENSHCOG00000010072	clp1	95	78.571	ENSMODG00000024148	-	97	78.571	Monodelphis_domestica
ENSHCOG00000010072	clp1	95	78.571	ENSMODG00000020107	-	97	78.571	Monodelphis_domestica
ENSHCOG00000010072	clp1	100	94.785	ENSMALG00000014239	clp1	100	94.785	Monopterus_albus
ENSHCOG00000010072	clp1	99	76.322	MGP_CAROLIEiJ_G0023726	Clp1	99	76.322	Mus_caroli
ENSHCOG00000010072	clp1	99	76.322	ENSMUSG00000027079	Clp1	99	76.322	Mus_musculus
ENSHCOG00000010072	clp1	99	76.092	MGP_PahariEiJ_G0025177	Clp1	99	76.092	Mus_pahari
ENSHCOG00000010072	clp1	99	76.322	MGP_SPRETEiJ_G0024646	Clp1	99	76.322	Mus_spretus
ENSHCOG00000010072	clp1	99	76.552	ENSMPUG00000000268	CLP1	99	76.552	Mustela_putorius_furo
ENSHCOG00000010072	clp1	99	77.241	ENSMLUG00000007904	CLP1	99	77.241	Myotis_lucifugus
ENSHCOG00000010072	clp1	99	76.322	ENSNGAG00000006165	Clp1	99	76.322	Nannospalax_galili
ENSHCOG00000010072	clp1	100	94.785	ENSNBRG00000005225	clp1	100	94.785	Neolamprologus_brichardi
ENSHCOG00000010072	clp1	80	71.765	ENSNLEG00000012809	-	99	71.765	Nomascus_leucogenys
ENSHCOG00000010072	clp1	95	78.385	ENSMEUG00000010949	CLP1	97	78.385	Notamacropus_eugenii
ENSHCOG00000010072	clp1	69	78.548	ENSOPRG00000007329	CLP1	100	78.548	Ochotona_princeps
ENSHCOG00000010072	clp1	99	76.782	ENSODEG00000011410	CLP1	99	76.782	Octodon_degus
ENSHCOG00000010072	clp1	100	94.558	ENSONIG00000005089	clp1	100	94.558	Oreochromis_niloticus
ENSHCOG00000010072	clp1	99	77.011	ENSOCUG00000007045	CLP1	99	77.011	Oryctolagus_cuniculus
ENSHCOG00000010072	clp1	100	92.290	ENSORLG00000003647	clp1	100	92.290	Oryzias_latipes
ENSHCOG00000010072	clp1	100	92.063	ENSORLG00020016676	clp1	100	92.063	Oryzias_latipes_hni
ENSHCOG00000010072	clp1	100	92.290	ENSORLG00015019484	clp1	100	92.290	Oryzias_latipes_hsok
ENSHCOG00000010072	clp1	100	92.744	ENSOMEG00000021303	clp1	100	92.744	Oryzias_melastigma
ENSHCOG00000010072	clp1	99	76.782	ENSOGAG00000004508	CLP1	99	76.782	Otolemur_garnettii
ENSHCOG00000010072	clp1	99	75.632	ENSOARG00000010145	CLP1	98	75.632	Ovis_aries
ENSHCOG00000010072	clp1	99	77.011	ENSPPAG00000041519	CLP1	99	77.011	Pan_paniscus
ENSHCOG00000010072	clp1	99	76.782	ENSPPRG00000006135	CLP1	99	76.782	Panthera_pardus
ENSHCOG00000010072	clp1	99	76.782	ENSPTIG00000015866	CLP1	99	76.782	Panthera_tigris_altaica
ENSHCOG00000010072	clp1	99	77.011	ENSPTRG00000047318	CLP1	99	77.011	Pan_troglodytes
ENSHCOG00000010072	clp1	99	76.310	ENSPANG00000017078	CLP1	98	76.310	Papio_anubis
ENSHCOG00000010072	clp1	100	86.067	ENSPKIG00000007697	clp1	100	86.517	Paramormyrops_kingsleyae
ENSHCOG00000010072	clp1	93	73.544	ENSPSIG00000005468	CLP1	99	73.544	Pelodiscus_sinensis
ENSHCOG00000010072	clp1	100	93.651	ENSPMGG00000012171	clp1	100	93.651	Periophthalmus_magnuspinnatus
ENSHCOG00000010072	clp1	99	76.552	ENSPEMG00000011213	-	99	76.552	Peromyscus_maniculatus_bairdii
ENSHCOG00000010072	clp1	99	67.202	ENSPMAG00000006707	clp1	99	67.202	Petromyzon_marinus
ENSHCOG00000010072	clp1	99	77.011	ENSPCIG00000011899	CLP1	99	77.011	Phascolarctos_cinereus
ENSHCOG00000010072	clp1	100	93.651	ENSPFOG00000008169	clp1	100	93.651	Poecilia_formosa
ENSHCOG00000010072	clp1	100	93.651	ENSPLAG00000022388	clp1	100	93.651	Poecilia_latipinna
ENSHCOG00000010072	clp1	100	93.651	ENSPMEG00000021088	clp1	100	93.651	Poecilia_mexicana
ENSHCOG00000010072	clp1	100	93.878	ENSPREG00000017802	clp1	100	93.878	Poecilia_reticulata
ENSHCOG00000010072	clp1	52	75.983	ENSPPYG00000003266	-	100	75.983	Pongo_abelii
ENSHCOG00000010072	clp1	99	76.322	ENSPCOG00000000360	CLP1	99	76.322	Propithecus_coquereli
ENSHCOG00000010072	clp1	99	76.552	ENSPVAG00000016270	CLP1	99	76.552	Pteropus_vampyrus
ENSHCOG00000010072	clp1	100	94.785	ENSPNYG00000017274	clp1	99	94.785	Pundamilia_nyererei
ENSHCOG00000010072	clp1	100	85.491	ENSPNAG00000026460	clp1	100	86.161	Pygocentrus_nattereri
ENSHCOG00000010072	clp1	99	76.322	ENSRNOG00000007416	Clp1	99	76.322	Rattus_norvegicus
ENSHCOG00000010072	clp1	99	77.011	ENSRBIG00000018191	CLP1	99	77.011	Rhinopithecus_bieti
ENSHCOG00000010072	clp1	99	77.011	ENSRROG00000039265	CLP1	99	77.011	Rhinopithecus_roxellana
ENSHCOG00000010072	clp1	99	77.011	ENSSBOG00000032517	-	99	77.011	Saimiri_boliviensis_boliviensis
ENSHCOG00000010072	clp1	94	63.527	ENSSBOG00000010558	-	93	63.527	Saimiri_boliviensis_boliviensis
ENSHCOG00000010072	clp1	95	78.622	ENSSHAG00000015695	CLP1	97	78.622	Sarcophilus_harrisii
ENSHCOG00000010072	clp1	100	85.210	ENSSFOG00015000628	clp1	100	85.430	Scleropages_formosus
ENSHCOG00000010072	clp1	100	95.011	ENSSMAG00000019423	clp1	99	95.011	Scophthalmus_maximus
ENSHCOG00000010072	clp1	100	95.918	ENSSDUG00000014495	clp1	100	95.918	Seriola_dumerili
ENSHCOG00000010072	clp1	100	95.692	ENSSLDG00000000937	clp1	100	95.692	Seriola_lalandi_dorsalis
ENSHCOG00000010072	clp1	52	75.877	ENSSARG00000002459	CLP1	100	75.877	Sorex_araneus
ENSHCOG00000010072	clp1	96	76.887	ENSSPUG00000016811	CLP1	98	76.887	Sphenodon_punctatus
ENSHCOG00000010072	clp1	100	94.785	ENSSPAG00000016052	clp1	100	94.785	Stegastes_partitus
ENSHCOG00000010072	clp1	99	76.552	ENSSSCG00000031442	CLP1	99	76.552	Sus_scrofa
ENSHCOG00000010072	clp1	98	76.620	ENSTGUG00000007002	CLP1	99	76.620	Taeniopygia_guttata
ENSHCOG00000010072	clp1	100	91.837	ENSTRUG00000012602	clp1	100	91.837	Takifugu_rubripes
ENSHCOG00000010072	clp1	100	90.703	ENSTNIG00000013125	clp1	100	90.703	Tetraodon_nigroviridis
ENSHCOG00000010072	clp1	99	76.322	ENSTBEG00000009975	CLP1	99	76.322	Tupaia_belangeri
ENSHCOG00000010072	clp1	99	76.552	ENSTTRG00000002096	CLP1	99	76.552	Tursiops_truncatus
ENSHCOG00000010072	clp1	99	76.552	ENSUAMG00000011388	CLP1	99	76.552	Ursus_americanus
ENSHCOG00000010072	clp1	99	76.552	ENSUMAG00000018317	CLP1	99	76.552	Ursus_maritimus
ENSHCOG00000010072	clp1	100	75.510	ENSVVUG00000017138	CLP1	99	75.510	Vulpes_vulpes
ENSHCOG00000010072	clp1	95	73.159	ENSXETG00000007088	clp1	95	73.397	Xenopus_tropicalis
ENSHCOG00000010072	clp1	100	93.651	ENSXCOG00000002287	clp1	100	93.651	Xiphophorus_couchianus
ENSHCOG00000010072	clp1	100	93.651	ENSXMAG00000009783	clp1	100	93.651	Xiphophorus_maculatus