EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000010198 (Gene tree)
Gene ID: 109524889
Gene Symbol: FXR1 (1 of many)
Alias: wu:fb16f11|wu:fd18c10
Full Name: fragile X mental retardation syndrome-related protein 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 4337 bases
Position: chrKV879755.1:583078-587414
Accession: 109524889
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000022454	KH_1	PF00013.29	9.8e-07	1	1
ENSHCOP00000022454	Agenet	PF05641.12	5.7e-15	1	2
ENSHCOP00000022454	Agenet	PF05641.12	5.7e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000001030	FXR1 (1 of many)-201	846	XM_019885021	ENSHCOP00000022454	281 (aa)	XP_019740580	UPI00094EBE0B

Gene Model

Click here to download ENSHCOG00000010198's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000010198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000010198	FXR1	100	99.644	ENSHCOG00000010337	fxr1	50	99.644
ENSHCOG00000010198	FXR1	100	99.644	ENSHCOG00000010273	fxr1	60	99.644

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000010198	FXR1	100	67.616	ENSG00000102081	FMR1	95	67.616	Homo_sapiens
ENSHCOG00000010198	FXR1	99	70.863	ENSG00000129245	FXR2	99	70.085	Homo_sapiens
ENSHCOG00000010198	FXR1	100	74.733	ENSG00000114416	FXR1	100	73.171	Homo_sapiens
ENSHCOG00000010198	FXR1	100	65.957	ENSACIG00000022552	fmr1	55	63.763	Amphilophus_citrinellus
ENSHCOG00000010198	FXR1	100	66.904	ENSAOCG00000008025	fmr1	55	66.904	Amphiprion_ocellaris
ENSHCOG00000010198	FXR1	100	74.733	ENSANAG00000026001	FXR1	52	74.733	Aotus_nancymaae
ENSHCOG00000010198	FXR1	100	67.616	ENSANAG00000026715	FMR1	95	67.616	Aotus_nancymaae
ENSHCOG00000010198	FXR1	100	74.733	ENSBTAG00000016457	FXR1	52	74.733	Bos_taurus
ENSHCOG00000010198	FXR1	100	74.733	ENSCJAG00000012802	FXR1	52	74.733	Callithrix_jacchus
ENSHCOG00000010198	FXR1	100	67.616	ENSCJAG00000003925	FMR1	95	67.616	Callithrix_jacchus
ENSHCOG00000010198	FXR1	100	74.733	ENSCAFG00000011582	FXR1	52	74.733	Canis_familiaris
ENSHCOG00000010198	FXR1	100	67.972	ENSCAFG00020024366	FMR1	50	67.972	Canis_lupus_dingo
ENSHCOG00000010198	FXR1	100	74.733	ENSTSYG00000001610	FXR1	52	74.733	Carlito_syrichta
ENSHCOG00000010198	FXR1	96	67.037	ENSTSYG00000014392	FMR1	91	67.037	Carlito_syrichta
ENSHCOG00000010198	FXR1	100	67.616	ENSCCAG00000021737	FMR1	95	67.616	Cebus_capucinus
ENSHCOG00000010198	FXR1	100	74.733	ENSCATG00000040925	FXR1	52	74.733	Cercocebus_atys
ENSHCOG00000010198	FXR1	100	67.616	ENSCATG00000038319	FMR1	95	67.616	Cercocebus_atys
ENSHCOG00000010198	FXR1	100	68.327	ENSCPBG00000020840	FMR1	50	68.327	Chrysemys_picta_bellii
ENSHCOG00000010198	FXR1	100	49.135	ENSCING00000008519	-	61	49.135	Ciona_intestinalis
ENSHCOG00000010198	FXR1	70	47.208	ENSCSAVG00000007423	-	60	47.208	Ciona_savignyi
ENSHCOG00000010198	FXR1	100	67.616	ENSCANG00000033482	FMR1	95	67.616	Colobus_angolensis_palliatus
ENSHCOG00000010198	FXR1	100	64.413	ENSCSEG00000016308	fmr1	61	64.413	Cynoglossus_semilaevis
ENSHCOG00000010198	FXR1	100	43.706	FBgn0028734	Fmr1	54	43.706	Drosophila_melanogaster
ENSHCOG00000010198	FXR1	100	74.377	ENSECAG00000007560	FXR1	52	74.377	Equus_caballus
ENSHCOG00000010198	FXR1	100	67.972	ENSFCAG00000007228	FMR1	52	67.972	Felis_catus
ENSHCOG00000010198	FXR1	100	67.972	ENSFALG00000012085	FMR1	51	67.972	Ficedula_albicollis
ENSHCOG00000010198	FXR1	52	88.571	ENSFHEG00000003734	-	78	88.571	Fundulus_heteroclitus
ENSHCOG00000010198	FXR1	100	63.701	ENSGMOG00000006141	fmr1	56	63.701	Gadus_morhua
ENSHCOG00000010198	FXR1	100	67.972	ENSGALG00000009177	FMR1	51	67.972	Gallus_gallus
ENSHCOG00000010198	FXR1	100	65.480	ENSGACG00000018742	fmr1	51	65.480	Gasterosteus_aculeatus
ENSHCOG00000010198	FXR1	100	74.733	ENSGGOG00000009957	-	52	74.733	Gorilla_gorilla
ENSHCOG00000010198	FXR1	94	65.909	ENSGGOG00000010373	FMR1	94	65.909	Gorilla_gorilla
ENSHCOG00000010198	FXR1	100	66.548	ENSHBUG00000012534	fmr1	54	66.548	Haplochromis_burtoni
ENSHCOG00000010198	FXR1	100	74.377	ENSHGLG00100017463	FXR1	52	74.377	Heterocephalus_glaber_male
ENSHCOG00000010198	FXR1	100	66.192	ENSIPUG00000014418	fmr1-b	52	66.192	Ictalurus_punctatus
ENSHCOG00000010198	FXR1	100	67.972	ENSJJAG00000008538	-	93	67.972	Jaculus_jaculus
ENSHCOG00000010198	FXR1	100	65.480	ENSKMAG00000006554	fmr1	54	65.480	Kryptolebias_marmoratus
ENSHCOG00000010198	FXR1	100	85.409	ENSLBEG00000015038	fxr1	50	70.819	Labrus_bergylta
ENSHCOG00000010198	FXR1	100	67.616	ENSMFAG00000000241	FMR1	95	67.616	Macaca_fascicularis
ENSHCOG00000010198	FXR1	100	74.733	ENSMFAG00000040264	FXR1	52	74.733	Macaca_fascicularis
ENSHCOG00000010198	FXR1	100	67.616	ENSMMUG00000015814	FMR1	95	67.616	Macaca_mulatta
ENSHCOG00000010198	FXR1	100	74.733	ENSMMUG00000012105	FXR1	92	72.180	Macaca_mulatta
ENSHCOG00000010198	FXR1	100	67.616	ENSMNEG00000024342	FMR1	95	67.616	Macaca_nemestrina
ENSHCOG00000010198	FXR1	100	74.733	ENSMNEG00000031733	FXR1	52	74.733	Macaca_nemestrina
ENSHCOG00000010198	FXR1	100	74.733	ENSMLEG00000041270	FXR1	52	74.733	Mandrillus_leucophaeus
ENSHCOG00000010198	FXR1	100	67.616	ENSMLEG00000035664	FMR1	95	67.616	Mandrillus_leucophaeus
ENSHCOG00000010198	FXR1	88	69.880	ENSMZEG00005007512	FXR2	54	69.880	Maylandia_zebra
ENSHCOG00000010198	FXR1	87	65.984	ENSMAUG00000000336	-	87	65.984	Mesocricetus_auratus
ENSHCOG00000010198	FXR1	100	67.972	ENSMICG00000000838	FMR1	95	67.972	Microcebus_murinus
ENSHCOG00000010198	FXR1	98	72.101	ENSMOCG00000017707	Fxr1	51	74.242	Microtus_ochrogaster
ENSHCOG00000010198	FXR1	100	75.089	ENSMUSG00000027680	Fxr1	52	75.089	Mus_musculus
ENSHCOG00000010198	FXR1	100	75.089	MGP_PahariEiJ_G0026371	Fxr1	85	69.737	Mus_pahari
ENSHCOG00000010198	FXR1	95	73.783	ENSNGAG00000021726	Fxr1	51	74.242	Nannospalax_galili
ENSHCOG00000010198	FXR1	100	66.192	ENSNBRG00000022213	fmr1	54	66.192	Neolamprologus_brichardi
ENSHCOG00000010198	FXR1	100	66.904	ENSNLEG00000013269	FMR1	95	66.904	Nomascus_leucogenys
ENSHCOG00000010198	FXR1	94	73.864	ENSNLEG00000005928	FXR1	51	73.864	Nomascus_leucogenys
ENSHCOG00000010198	FXR1	100	67.616	ENSPPAG00000041836	FMR1	95	67.616	Pan_paniscus
ENSHCOG00000010198	FXR1	100	74.733	ENSPPAG00000037630	-	52	74.733	Pan_paniscus
ENSHCOG00000010198	FXR1	100	74.733	ENSPPRG00000004943	FXR1	52	74.733	Panthera_pardus
ENSHCOG00000010198	FXR1	93	61.686	ENSPPRG00000015847	-	96	61.686	Panthera_pardus
ENSHCOG00000010198	FXR1	100	67.972	ENSPPRG00000018962	FMR1	52	67.972	Panthera_pardus
ENSHCOG00000010198	FXR1	100	74.733	ENSPTIG00000019748	FXR1	52	74.733	Panthera_tigris_altaica
ENSHCOG00000010198	FXR1	95	64.552	ENSPTIG00000019115	FMR1	50	64.552	Panthera_tigris_altaica
ENSHCOG00000010198	FXR1	100	67.616	ENSPTRG00000022349	FMR1	95	67.616	Pan_troglodytes
ENSHCOG00000010198	FXR1	100	74.733	ENSPTRG00000015656	-	52	74.733	Pan_troglodytes
ENSHCOG00000010198	FXR1	100	74.733	ENSPANG00000011899	FXR1	51	73.585	Papio_anubis
ENSHCOG00000010198	FXR1	94	65.909	ENSPANG00000018447	FMR1	94	65.909	Papio_anubis
ENSHCOG00000010198	FXR1	100	65.836	ENSPMGG00000013391	fmr1	60	65.836	Periophthalmus_magnuspinnatus
ENSHCOG00000010198	FXR1	95	73.684	ENSPEMG00000012962	Fxr1	51	74.242	Peromyscus_maniculatus_bairdii
ENSHCOG00000010198	FXR1	100	66.904	ENSPCIG00000022498	FMR1	50	66.904	Phascolarctos_cinereus
ENSHCOG00000010198	FXR1	100	85.765	ENSPMEG00000019092	fxr1	51	85.765	Poecilia_mexicana
ENSHCOG00000010198	FXR1	75	65.238	ENSPREG00000003249	fmr1	77	65.238	Poecilia_reticulata
ENSHCOG00000010198	FXR1	100	67.616	ENSPCOG00000028651	FMR1	94	67.616	Propithecus_coquereli
ENSHCOG00000010198	FXR1	100	74.733	ENSPCOG00000020057	FXR1	50	62.278	Propithecus_coquereli
ENSHCOG00000010198	FXR1	100	63.345	ENSPVAG00000002823	FXR1	50	63.345	Pteropus_vampyrus
ENSHCOG00000010198	FXR1	100	66.548	ENSPNYG00000000045	fmr1	61	66.548	Pundamilia_nyererei
ENSHCOG00000010198	FXR1	100	74.733	ENSRBIG00000036968	FXR1	55	74.733	Rhinopithecus_bieti
ENSHCOG00000010198	FXR1	96	64.706	ENSRROG00000044396	FMR1	94	64.706	Rhinopithecus_roxellana
ENSHCOG00000010198	FXR1	100	74.733	ENSRROG00000034524	FXR1	52	74.733	Rhinopithecus_roxellana
ENSHCOG00000010198	FXR1	100	67.616	ENSSBOG00000026623	FMR1	95	67.616	Saimiri_boliviensis_boliviensis
ENSHCOG00000010198	FXR1	94	73.864	ENSSBOG00000033567	FXR1	51	73.864	Saimiri_boliviensis_boliviensis
ENSHCOG00000010198	FXR1	100	69.039	ENSSFOG00015004051	fmr1	50	69.039	Scleropages_formosus
ENSHCOG00000010198	FXR1	100	66.192	ENSSMAG00000013698	fmr1	54	66.192	Scophthalmus_maximus
ENSHCOG00000010198	FXR1	100	66.192	ENSSLDG00000022042	fmr1	57	62.278	Seriola_lalandi_dorsalis
ENSHCOG00000010198	FXR1	94	66.160	ENSSPUG00000014177	FMR1	50	66.160	Sphenodon_punctatus
ENSHCOG00000010198	FXR1	100	74.377	ENSSSCG00000011769	FXR1	52	74.377	Sus_scrofa
ENSHCOG00000010198	FXR1	100	67.972	ENSSSCG00000012727	FMR1	50	67.972	Sus_scrofa
ENSHCOG00000010198	FXR1	100	61.566	ENSTNIG00000010121	fmr1	50	61.566	Tetraodon_nigroviridis
ENSHCOG00000010198	FXR1	100	69.039	ENSTNIG00000005118	fxr2	50	69.039	Tetraodon_nigroviridis
ENSHCOG00000010198	FXR1	100	67.972	ENSUAMG00000013787	FMR1	91	65.918	Ursus_americanus
ENSHCOG00000010198	FXR1	99	70.863	ENSUAMG00000001330	FXR2	52	65.693	Ursus_americanus
ENSHCOG00000010198	FXR1	99	64.388	ENSUMAG00000009869	FMR1	94	64.388	Ursus_maritimus
ENSHCOG00000010198	FXR1	100	69.039	ENSXETG00000019647	fmr1	50	69.039	Xenopus_tropicalis
ENSHCOG00000010198	FXR1	100	69.039	ENSXCOG00000005798	fxr2	89	67.790	Xiphophorus_couchianus
ENSHCOG00000010198	FXR1	100	67.260	ENSXCOG00000013342	fmr1	55	67.260	Xiphophorus_couchianus