EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000010229 (Gene tree)
Gene ID: 109512119
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 11747 bases
Position: chrKV879817.1:1888536-1900282
Accession: 109512119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000022461	EST1	PF10374.9	1.8e-22	1	1
ENSHCOP00000022461	EST1_DNA_bind	PF10373.9	2.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000001005	-	2694	XM_019863621	ENSHCOP00000022461	897 (aa)	XP_019719180	-

Gene Model

Click here to download ENSHCOG00000010229's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000010229's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000010229	smg5	83	78.571	ENSG00000198952	SMG5	86	73.350	Homo_sapiens
ENSHCOG00000010229	smg5	94	86.000	ENSAPOG00000019690	smg5	99	66.053	Acanthochromis_polyacanthus
ENSHCOG00000010229	smg5	84	74.185	ENSAMEG00000014458	SMG5	99	58.813	Ailuropoda_melanoleuca
ENSHCOG00000010229	smg5	93	83.575	ENSACIG00000001353	smg5	87	83.575	Amphilophus_citrinellus
ENSHCOG00000010229	smg5	94	83.133	ENSAOCG00000019483	smg5	86	78.271	Amphiprion_ocellaris
ENSHCOG00000010229	smg5	94	83.213	ENSAPEG00000022949	smg5	86	78.271	Amphiprion_percula
ENSHCOG00000010229	smg5	94	83.981	ENSATEG00000005348	smg5	88	83.981	Anabas_testudineus
ENSHCOG00000010229	smg5	92	74.378	ENSAPLG00000010263	SMG5	85	74.627	Anas_platyrhynchos
ENSHCOG00000010229	smg5	83	80.952	ENSANAG00000032899	SMG5	86	74.372	Aotus_nancymaae
ENSHCOG00000010229	smg5	94	83.133	ENSACLG00000009311	smg5	88	83.373	Astatotilapia_calliptera
ENSHCOG00000010229	smg5	92	84.198	ENSAMXG00000024616	smg5	85	78.700	Astyanax_mexicanus
ENSHCOG00000010229	smg5	88	49.377	ENSBTAG00000021747	-	85	49.377	Bos_taurus
ENSHCOG00000010229	smg5	84	73.594	ENSBTAG00000009435	SMG5	86	73.839	Bos_taurus
ENSHCOG00000010229	smg5	83	78.571	ENSCJAG00000005684	SMG5	86	73.350	Callithrix_jacchus
ENSHCOG00000010229	smg5	83	78.571	ENSCAFG00000016839	SMG5	86	73.171	Canis_familiaris
ENSHCOG00000010229	smg5	83	78.571	ENSCAFG00020006061	SMG5	86	73.171	Canis_lupus_dingo
ENSHCOG00000010229	smg5	88	49.626	ENSCHIG00000006323	-	86	49.626	Capra_hircus
ENSHCOG00000010229	smg5	84	73.350	ENSCHIG00000007709	SMG5	86	72.947	Capra_hircus
ENSHCOG00000010229	smg5	83	78.571	ENSTSYG00000004099	SMG5	86	74.083	Carlito_syrichta
ENSHCOG00000010229	smg5	88	50.441	ENSCAPG00000003631	SMG5	84	49.451	Cavia_aperea
ENSHCOG00000010229	smg5	92	72.861	ENSCPOG00000015696	SMG5	86	72.861	Cavia_porcellus
ENSHCOG00000010229	smg5	83	77.273	ENSCCAG00000027409	SMG5	86	74.372	Cebus_capucinus
ENSHCOG00000010229	smg5	83	78.571	ENSCATG00000030539	SMG5	86	73.594	Cercocebus_atys
ENSHCOG00000010229	smg5	83	77.778	ENSCLAG00000003983	SMG5	99	58.511	Chinchilla_lanigera
ENSHCOG00000010229	smg5	83	78.571	ENSCSAG00000002120	SMG5	86	73.594	Chlorocebus_sabaeus
ENSHCOG00000010229	smg5	57	69.675	ENSCHOG00000008741	-	57	69.675	Choloepus_hoffmanni
ENSHCOG00000010229	smg5	86	75.000	ENSCPBG00000025848	SMG5	84	75.284	Chrysemys_picta_bellii
ENSHCOG00000010229	smg5	70	36.203	ENSCING00000008706	-	69	36.203	Ciona_intestinalis
ENSHCOG00000010229	smg5	83	78.571	ENSCANG00000029208	SMG5	86	73.594	Colobus_angolensis_palliatus
ENSHCOG00000010229	smg5	92	71.463	ENSCGRG00001006336	Smg5	87	71.703	Cricetulus_griseus_chok1gshd
ENSHCOG00000010229	smg5	91	73.804	ENSCGRG00000005111	Smg5	87	73.990	Cricetulus_griseus_crigri
ENSHCOG00000010229	smg5	93	82.609	ENSCSEG00000014220	smg5	99	63.168	Cynoglossus_semilaevis
ENSHCOG00000010229	smg5	94	65.485	ENSCVAG00000000529	smg5	89	65.485	Cyprinodon_variegatus
ENSHCOG00000010229	smg5	94	80.000	ENSDARG00000041481	smg5	85	75.771	Danio_rerio
ENSHCOG00000010229	smg5	89	30.193	ENSDNOG00000039862	-	99	30.193	Dasypus_novemcinctus
ENSHCOG00000010229	smg5	78	80.952	ENSDNOG00000000051	SMG5	82	72.928	Dasypus_novemcinctus
ENSHCOG00000010229	smg5	83	75.556	ENSDORG00000010382	Smg5	86	74.083	Dipodomys_ordii
ENSHCOG00000010229	smg5	58	82.716	ENSETEG00000010336	SMG5	58	82.716	Echinops_telfairi
ENSHCOG00000010229	smg5	67	53.518	ENSEBUG00000003739	smg5	79	53.518	Eptatretus_burgeri
ENSHCOG00000010229	smg5	83	78.571	ENSEASG00005019122	SMG5	86	73.839	Equus_asinus_asinus
ENSHCOG00000010229	smg5	83	78.571	ENSECAG00000001389	SMG5	86	73.839	Equus_caballus
ENSHCOG00000010229	smg5	72	73.851	ENSEEUG00000012690	SMG5	66	74.138	Erinaceus_europaeus
ENSHCOG00000010229	smg5	97	83.212	ENSELUG00000012585	smg5	91	83.212	Esox_lucius
ENSHCOG00000010229	smg5	92	72.993	ENSFCAG00000011783	SMG5	87	71.838	Felis_catus
ENSHCOG00000010229	smg5	52	75.439	ENSFALG00000001166	-	79	75.689	Ficedula_albicollis
ENSHCOG00000010229	smg5	92	73.020	ENSFDAG00000017388	SMG5	87	73.515	Fukomys_damarensis
ENSHCOG00000010229	smg5	92	79.845	ENSFHEG00000013939	smg5	98	65.066	Fundulus_heteroclitus
ENSHCOG00000010229	smg5	96	76.068	ENSGMOG00000007310	smg5	86	75.214	Gadus_morhua
ENSHCOG00000010229	smg5	91	74.876	ENSGALG00000029918	-	84	75.124	Gallus_gallus
ENSHCOG00000010229	smg5	93	82.410	ENSGAFG00000021691	smg5	93	67.974	Gambusia_affinis
ENSHCOG00000010229	smg5	94	83.294	ENSGACG00000013142	smg5	87	78.728	Gasterosteus_aculeatus
ENSHCOG00000010229	smg5	97	61.217	ENSGAGG00000016131	SMG5	93	61.787	Gopherus_agassizii
ENSHCOG00000010229	smg5	83	78.571	ENSGGOG00000010932	SMG5	86	73.350	Gorilla_gorilla
ENSHCOG00000010229	smg5	94	83.133	ENSHBUG00000008654	smg5	88	83.373	Haplochromis_burtoni
ENSHCOG00000010229	smg5	92	72.530	ENSHGLG00000019152	SMG5	86	73.012	Heterocephalus_glaber_female
ENSHCOG00000010229	smg5	79	72.289	ENSHGLG00100015948	SMG5	82	72.771	Heterocephalus_glaber_male
ENSHCOG00000010229	smg5	93	81.643	ENSIPUG00000006624	Smg5	85	77.162	Ictalurus_punctatus
ENSHCOG00000010229	smg5	92	73.594	ENSSTOG00000001780	SMG5	86	73.594	Ictidomys_tridecemlineatus
ENSHCOG00000010229	smg5	93	72.422	ENSJJAG00000022763	Smg5	86	72.662	Jaculus_jaculus
ENSHCOG00000010229	smg5	93	83.855	ENSKMAG00000014586	smg5	86	76.271	Kryptolebias_marmoratus
ENSHCOG00000010229	smg5	93	84.691	ENSLBEG00000002145	smg5	88	84.444	Labrus_bergylta
ENSHCOG00000010229	smg5	91	68.814	ENSLACG00000010521	SMG5	84	68.814	Latimeria_chalumnae
ENSHCOG00000010229	smg5	93	78.795	ENSLOCG00000008380	smg5	84	74.336	Lepisosteus_oculatus
ENSHCOG00000010229	smg5	86	72.771	ENSLAFG00000006241	SMG5	86	72.771	Loxodonta_africana
ENSHCOG00000010229	smg5	83	78.571	ENSMFAG00000045357	SMG5	86	73.594	Macaca_fascicularis
ENSHCOG00000010229	smg5	83	78.571	ENSMMUG00000000090	SMG5	87	73.594	Macaca_mulatta
ENSHCOG00000010229	smg5	83	78.571	ENSMNEG00000044425	SMG5	86	73.594	Macaca_nemestrina
ENSHCOG00000010229	smg5	83	78.571	ENSMLEG00000041192	SMG5	85	63.325	Mandrillus_leucophaeus
ENSHCOG00000010229	smg5	95	83.333	ENSMAMG00000010683	smg5	83	83.611	Mastacembelus_armatus
ENSHCOG00000010229	smg5	55	90.000	ENSMZEG00005016543	smg5	82	90.000	Maylandia_zebra
ENSHCOG00000010229	smg5	94	83.133	ENSMZEG00005015815	smg5	87	83.373	Maylandia_zebra
ENSHCOG00000010229	smg5	92	72.372	ENSMAUG00000010381	Smg5	86	72.616	Mesocricetus_auratus
ENSHCOG00000010229	smg5	83	80.952	ENSMICG00000002257	SMG5	86	73.594	Microcebus_murinus
ENSHCOG00000010229	smg5	84	72.861	ENSMOCG00000016590	Smg5	86	72.861	Microtus_ochrogaster
ENSHCOG00000010229	smg5	93	80.430	ENSMMOG00000017199	smg5	93	64.286	Mola_mola
ENSHCOG00000010229	smg5	80	70.766	ENSMODG00000016901	SMG5	83	72.947	Monodelphis_domestica
ENSHCOG00000010229	smg5	64	36.788	ENSMODG00000004532	-	71	36.634	Monodelphis_domestica
ENSHCOG00000010229	smg5	73	33.333	ENSMODG00000004735	-	76	33.333	Monodelphis_domestica
ENSHCOG00000010229	smg5	78	33.333	ENSMODG00000004511	-	73	33.813	Monodelphis_domestica
ENSHCOG00000010229	smg5	69	33.773	ENSMODG00000010675	-	76	34.037	Monodelphis_domestica
ENSHCOG00000010229	smg5	96	77.045	ENSMALG00000010375	smg5	85	77.045	Monopterus_albus
ENSHCOG00000010229	smg5	92	71.981	MGP_CAROLIEiJ_G0025163	Smg5	100	79.888	Mus_caroli
ENSHCOG00000010229	smg5	92	71.981	ENSMUSG00000001415	Smg5	99	79.888	Mus_musculus
ENSHCOG00000010229	smg5	92	72.289	MGP_PahariEiJ_G0026606	Smg5	100	80.556	Mus_pahari
ENSHCOG00000010229	smg5	92	71.981	MGP_SPRETEiJ_G0026104	Smg5	100	79.888	Mus_spretus
ENSHCOG00000010229	smg5	78	72.958	ENSMPUG00000004546	SMG5	87	72.958	Mustela_putorius_furo
ENSHCOG00000010229	smg5	93	72.275	ENSMLUG00000008518	SMG5	86	73.839	Myotis_lucifugus
ENSHCOG00000010229	smg5	92	73.105	ENSNGAG00000020706	Smg5	86	73.350	Nannospalax_galili
ENSHCOG00000010229	smg5	96	45.940	ENSNGAG00000012101	-	98	35.918	Nannospalax_galili
ENSHCOG00000010229	smg5	90	83.133	ENSNBRG00000004332	smg5	96	65.890	Neolamprologus_brichardi
ENSHCOG00000010229	smg5	83	76.190	ENSNLEG00000012439	SMG5	86	73.594	Nomascus_leucogenys
ENSHCOG00000010229	smg5	92	72.816	ENSMEUG00000012834	SMG5	86	72.947	Notamacropus_eugenii
ENSHCOG00000010229	smg5	94	73.594	ENSOPRG00000009152	SMG5	87	73.141	Ochotona_princeps
ENSHCOG00000010229	smg5	92	73.350	ENSODEG00000012237	SMG5	87	72.662	Octodon_degus
ENSHCOG00000010229	smg5	94	82.410	ENSONIG00000008632	smg5	85	76.991	Oreochromis_niloticus
ENSHCOG00000010229	smg5	91	75.063	ENSOCUG00000012886	SMG5	87	75.315	Oryctolagus_cuniculus
ENSHCOG00000010229	smg5	63	45.144	ENSOCUG00000023338	-	95	34.548	Oryctolagus_cuniculus
ENSHCOG00000010229	smg5	91	81.995	ENSORLG00000016239	smg5	87	76.275	Oryzias_latipes
ENSHCOG00000010229	smg5	91	82.282	ENSORLG00020013127	smg5	99	65.691	Oryzias_latipes_hni
ENSHCOG00000010229	smg5	91	82.282	ENSORLG00015019014	smg5	99	65.404	Oryzias_latipes_hsok
ENSHCOG00000010229	smg5	72	81.412	ENSOMEG00000021330	smg5	89	66.018	Oryzias_melastigma
ENSHCOG00000010229	smg5	92	72.727	ENSOGAG00000004966	SMG5	86	72.705	Otolemur_garnettii
ENSHCOG00000010229	smg5	84	73.350	ENSOARG00000005778	SMG5	86	72.947	Ovis_aries
ENSHCOG00000010229	smg5	88	49.502	ENSOARG00000011963	-	86	49.502	Ovis_aries
ENSHCOG00000010229	smg5	83	78.571	ENSPPAG00000011996	SMG5	86	73.105	Pan_paniscus
ENSHCOG00000010229	smg5	91	74.307	ENSPPRG00000011901	SMG5	87	74.307	Panthera_pardus
ENSHCOG00000010229	smg5	91	70.588	ENSPTIG00000007892	SMG5	86	70.588	Panthera_tigris_altaica
ENSHCOG00000010229	smg5	83	78.571	ENSPTRG00000049282	-	86	73.105	Pan_troglodytes
ENSHCOG00000010229	smg5	83	78.571	ENSPTRG00000023925	SMG5	86	73.105	Pan_troglodytes
ENSHCOG00000010229	smg5	83	78.571	ENSPANG00000011201	SMG5	86	73.594	Papio_anubis
ENSHCOG00000010229	smg5	92	82.222	ENSPKIG00000009402	smg5	87	79.268	Paramormyrops_kingsleyae
ENSHCOG00000010229	smg5	91	75.567	ENSPSIG00000015198	SMG5	99	62.863	Pelodiscus_sinensis
ENSHCOG00000010229	smg5	93	80.896	ENSPMGG00000010465	smg5	83	80.896	Periophthalmus_magnuspinnatus
ENSHCOG00000010229	smg5	83	78.571	ENSPEMG00000001819	Smg5	86	72.861	Peromyscus_maniculatus_bairdii
ENSHCOG00000010229	smg5	92	59.102	ENSPMAG00000000410	smg5	90	57.831	Petromyzon_marinus
ENSHCOG00000010229	smg5	92	72.222	ENSPCIG00000018938	SMG5	87	72.182	Phascolarctos_cinereus
ENSHCOG00000010229	smg5	94	82.651	ENSPFOG00000010191	smg5	90	77.162	Poecilia_formosa
ENSHCOG00000010229	smg5	93	82.651	ENSPLAG00000009332	smg5	90	77.162	Poecilia_latipinna
ENSHCOG00000010229	smg5	94	83.051	ENSPMEG00000014105	smg5	92	83.051	Poecilia_mexicana
ENSHCOG00000010229	smg5	93	82.651	ENSPREG00000017713	smg5	93	66.547	Poecilia_reticulata
ENSHCOG00000010229	smg5	83	78.571	ENSPPYG00000000723	SMG5	86	73.350	Pongo_abelii
ENSHCOG00000010229	smg5	52	78.889	ENSPCAG00000008412	SMG5	55	78.889	Procavia_capensis
ENSHCOG00000010229	smg5	83	78.571	ENSPCOG00000004741	SMG5	86	73.839	Propithecus_coquereli
ENSHCOG00000010229	smg5	92	62.745	ENSPVAG00000016748	SMG5	86	62.745	Pteropus_vampyrus
ENSHCOG00000010229	smg5	94	82.410	ENSPNYG00000013397	smg5	86	76.991	Pundamilia_nyererei
ENSHCOG00000010229	smg5	92	82.885	ENSPNAG00000028363	smg5	87	78.378	Pygocentrus_nattereri
ENSHCOG00000010229	smg5	84	77.273	ENSRNOG00000019590	Smg5	86	72.048	Rattus_norvegicus
ENSHCOG00000010229	smg5	83	78.571	ENSRBIG00000027428	SMG5	86	73.350	Rhinopithecus_bieti
ENSHCOG00000010229	smg5	83	78.571	ENSRROG00000030035	SMG5	86	73.350	Rhinopithecus_roxellana
ENSHCOG00000010229	smg5	83	78.571	ENSSBOG00000033339	SMG5	86	73.594	Saimiri_boliviensis_boliviensis
ENSHCOG00000010229	smg5	91	73.750	ENSSHAG00000014163	SMG5	100	53.731	Sarcophilus_harrisii
ENSHCOG00000010229	smg5	77	35.696	ENSSHAG00000000561	-	78	35.714	Sarcophilus_harrisii
ENSHCOG00000010229	smg5	78	41.519	ENSSHAG00000009572	-	69	43.681	Sarcophilus_harrisii
ENSHCOG00000010229	smg5	94	78.846	ENSSFOG00015024175	smg5	87	79.087	Scleropages_formosus
ENSHCOG00000010229	smg5	97	77.974	ENSSMAG00000013059	smg5	86	78.194	Scophthalmus_maximus
ENSHCOG00000010229	smg5	93	83.532	ENSSDUG00000007122	smg5	86	79.039	Seriola_dumerili
ENSHCOG00000010229	smg5	93	84.578	ENSSLDG00000011418	smg5	95	66.195	Seriola_lalandi_dorsalis
ENSHCOG00000010229	smg5	72	67.876	ENSSARG00000012484	SMG5	71	67.876	Sorex_araneus
ENSHCOG00000010229	smg5	86	75.211	ENSSPUG00000002260	SMG5	84	75.211	Sphenodon_punctatus
ENSHCOG00000010229	smg5	97	80.505	ENSSPAG00000014266	smg5	88	81.422	Stegastes_partitus
ENSHCOG00000010229	smg5	83	78.571	ENSSSCG00000006490	-	86	74.648	Sus_scrofa
ENSHCOG00000010229	smg5	84	58.769	ENSSSCG00000039308	-	96	46.290	Sus_scrofa
ENSHCOG00000010229	smg5	94	73.913	ENSTGUG00000003748	-	88	74.101	Taeniopygia_guttata
ENSHCOG00000010229	smg5	93	80.605	ENSTRUG00000012580	smg5	86	80.397	Takifugu_rubripes
ENSHCOG00000010229	smg5	93	79.167	ENSTNIG00000010303	smg5	86	79.167	Tetraodon_nigroviridis
ENSHCOG00000010229	smg5	56	75.980	ENSTBEG00000002777	SMG5	50	75.980	Tupaia_belangeri
ENSHCOG00000010229	smg5	80	73.913	ENSTTRG00000001401	SMG5	82	74.185	Tursiops_truncatus
ENSHCOG00000010229	smg5	84	72.372	ENSUAMG00000013721	SMG5	99	58.824	Ursus_americanus
ENSHCOG00000010229	smg5	93	69.903	ENSUMAG00000018041	SMG5	98	58.716	Ursus_maritimus
ENSHCOG00000010229	smg5	84	64.141	ENSVPAG00000009446	SMG5	87	64.394	Vicugna_pacos
ENSHCOG00000010229	smg5	83	78.571	ENSVVUG00000005887	SMG5	86	73.171	Vulpes_vulpes
ENSHCOG00000010229	smg5	70	66.484	ENSXETG00000033791	SMG5	86	67.033	Xenopus_tropicalis
ENSHCOG00000010229	smg5	72	81.473	ENSXCOG00000004379	smg5	89	75.824	Xiphophorus_couchianus
ENSHCOG00000010229	smg5	93	81.687	ENSXMAG00000013499	smg5	89	80.482	Xiphophorus_maculatus