EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000010234 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 11298 bases
Position: chrKV880061.1:1002029-1013326
Accession: 109519071
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000008065	RRM_1	PF00076.22	3.4e-59	1	4
ENSHCOP00000008065	RRM_1	PF00076.22	3.4e-59	2	4
ENSHCOP00000008065	RRM_1	PF00076.22	3.4e-59	3	4
ENSHCOP00000008065	RRM_1	PF00076.22	3.4e-59	4	4
ENSHCOP00000008071	RRM_1	PF00076.22	3.4e-59	1	4
ENSHCOP00000008071	RRM_1	PF00076.22	3.4e-59	2	4
ENSHCOP00000008071	RRM_1	PF00076.22	3.4e-59	3	4
ENSHCOP00000008071	RRM_1	PF00076.22	3.4e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000000934	-	3772	-	ENSHCOP00000008065	708 (aa)	-	-
ENSHCOT00000000925	-	3772	XM_019875376	ENSHCOP00000008071	708 (aa)	XP_019730935	-

Gene Model

Click here to download ENSHCOG00000010234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000010234's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000010234	ncl	50	31.928	ENSHCOG00000012694	pabpc4	60	31.250
ENSHCOG00000010234	ncl	50	32.530	ENSHCOG00000013502	pabpc1a	58	32.530
ENSHCOG00000010234	ncl	54	38.945	ENSHCOG00000020361	-	89	39.370

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000010234	ncl	59	39.908	ENSAPOG00000014534	-	67	41.237	Acanthochromis_polyacanthus
ENSHCOG00000010234	ncl	61	76.484	ENSAPOG00000023888	ncl	89	72.136	Acanthochromis_polyacanthus
ENSHCOG00000010234	ncl	72	67.749	ENSACIG00000013234	ncl	68	74.505	Amphilophus_citrinellus
ENSHCOG00000010234	ncl	60	83.879	ENSAOCG00000003133	ncl	68	80.924	Amphiprion_ocellaris
ENSHCOG00000010234	ncl	56	40.047	ENSAOCG00000014792	-	61	40.769	Amphiprion_ocellaris
ENSHCOG00000010234	ncl	60	83.411	ENSAPEG00000002769	ncl	68	80.924	Amphiprion_percula
ENSHCOG00000010234	ncl	56	40.284	ENSAPEG00000013612	-	60	41.026	Amphiprion_percula
ENSHCOG00000010234	ncl	58	44.977	ENSATEG00000019862	-	80	44.961	Anabas_testudineus
ENSHCOG00000010234	ncl	66	81.277	ENSATEG00000013343	ncl	69	81.489	Anabas_testudineus
ENSHCOG00000010234	ncl	61	51.948	ENSAPLG00000012897	-	63	59.682	Anas_platyrhynchos
ENSHCOG00000010234	ncl	52	63.731	ENSACAG00000001006	-	54	62.060	Anolis_carolinensis
ENSHCOG00000010234	ncl	52	74.426	ENSACLG00000026031	ncl	85	74.426	Astatotilapia_calliptera
ENSHCOG00000010234	ncl	53	65.263	ENSAMXG00000001647	ncl	91	65.882	Astyanax_mexicanus
ENSHCOG00000010234	ncl	53	42.932	ENSCHIG00000012665	-	54	43.536	Capra_hircus
ENSHCOG00000010234	ncl	54	81.714	ENSCSEG00000015089	ncl	60	82.576	Cynoglossus_semilaevis
ENSHCOG00000010234	ncl	52	79.839	ENSCVAG00000012600	ncl	61	78.689	Cyprinodon_variegatus
ENSHCOG00000010234	ncl	60	71.963	ENSDARG00000002710	ncl	90	71.347	Danio_rerio
ENSHCOG00000010234	ncl	52	45.553	ENSDNOG00000031611	-	66	46.113	Dasypus_novemcinctus
ENSHCOG00000010234	ncl	51	48.077	ENSDNOG00000040257	-	61	48.087	Dasypus_novemcinctus
ENSHCOG00000010234	ncl	78	44.828	ENSEBUG00000016173	ncl	56	46.420	Eptatretus_burgeri
ENSHCOG00000010234	ncl	55	51.134	ENSELUG00000022826	-	80	51.872	Esox_lucius
ENSHCOG00000010234	ncl	60	72.390	ENSELUG00000006033	ncl	59	71.788	Esox_lucius
ENSHCOG00000010234	ncl	52	58.575	ENSFALG00000007592	-	59	56.627	Ficedula_albicollis
ENSHCOG00000010234	ncl	60	75.701	ENSFHEG00000018000	ncl	73	75.234	Fundulus_heteroclitus
ENSHCOG00000010234	ncl	53	67.969	ENSGMOG00000001341	ncl	60	67.639	Gadus_morhua
ENSHCOG00000010234	ncl	52	59.524	ENSGALG00000032930	NCL	58	57.606	Gallus_gallus
ENSHCOG00000010234	ncl	75	68.282	ENSGAFG00000015375	ncl	69	80.155	Gambusia_affinis
ENSHCOG00000010234	ncl	88	69.797	ENSGACG00000008970	ncl	75	73.535	Gasterosteus_aculeatus
ENSHCOG00000010234	ncl	60	59.410	ENSGAGG00000013330	-	56	62.467	Gopherus_agassizii
ENSHCOG00000010234	ncl	66	76.676	ENSHBUG00000006869	ncl	69	71.026	Haplochromis_burtoni
ENSHCOG00000010234	ncl	52	73.248	ENSIPUG00000024556	ncl	88	70.640	Ictalurus_punctatus
ENSHCOG00000010234	ncl	61	82.488	ENSLBEG00000019073	ncl	56	85.638	Labrus_bergylta
ENSHCOG00000010234	ncl	50	43.570	ENSLBEG00000014278	-	82	43.869	Labrus_bergylta
ENSHCOG00000010234	ncl	64	40.299	ENSLBEG00000007915	-	66	43.990	Labrus_bergylta
ENSHCOG00000010234	ncl	71	55.283	ENSLACG00000009328	ncl	55	63.760	Latimeria_chalumnae
ENSHCOG00000010234	ncl	58	50.847	ENSLACG00000022167	-	76	54.848	Latimeria_chalumnae
ENSHCOG00000010234	ncl	66	62.368	ENSLOCG00000004828	ncl	63	64.226	Lepisosteus_oculatus
ENSHCOG00000010234	ncl	92	67.625	ENSMAMG00000002086	ncl	56	80.128	Mastacembelus_armatus
ENSHCOG00000010234	ncl	62	39.301	ENSMAMG00000003479	-	69	41.192	Mastacembelus_armatus
ENSHCOG00000010234	ncl	52	76.676	ENSMZEG00005017438	ncl	60	75.000	Maylandia_zebra
ENSHCOG00000010234	ncl	51	59.511	ENSMGAG00000008147	-	84	63.556	Meleagris_gallopavo
ENSHCOG00000010234	ncl	88	49.175	ENSMODG00000002470	-	54	58.290	Monodelphis_domestica
ENSHCOG00000010234	ncl	89	70.654	ENSMALG00000014827	ncl	68	76.802	Monopterus_albus
ENSHCOG00000010234	ncl	53	77.855	ENSNBRG00000000146	-	86	78.893	Neolamprologus_brichardi
ENSHCOG00000010234	ncl	53	77.855	ENSNBRG00000001232	ncl	82	78.893	Neolamprologus_brichardi
ENSHCOG00000010234	ncl	52	59.416	ENSMEUG00000012335	-	54	59.367	Notamacropus_eugenii
ENSHCOG00000010234	ncl	53	40.000	ENSONIG00000010631	-	97	40.000	Oreochromis_niloticus
ENSHCOG00000010234	ncl	52	76.676	ENSONIG00000012508	ncl	69	72.379	Oreochromis_niloticus
ENSHCOG00000010234	ncl	52	60.724	ENSOANG00000008732	-	59	62.234	Ornithorhynchus_anatinus
ENSHCOG00000010234	ncl	89	63.676	ENSORLG00000007055	ncl	54	78.589	Oryzias_latipes
ENSHCOG00000010234	ncl	54	37.437	ENSORLG00000004645	-	83	37.760	Oryzias_latipes
ENSHCOG00000010234	ncl	60	36.036	ENSORLG00020003497	-	74	37.760	Oryzias_latipes_hni
ENSHCOG00000010234	ncl	83	67.960	ENSORLG00015013815	ncl	85	82.623	Oryzias_latipes_hsok
ENSHCOG00000010234	ncl	60	36.830	ENSORLG00015006613	-	77	38.542	Oryzias_latipes_hsok
ENSHCOG00000010234	ncl	55	38.424	ENSOMEG00000015864	-	82	38.342	Oryzias_melastigma
ENSHCOG00000010234	ncl	60	75.234	ENSPKIG00000002604	ncl	53	77.688	Paramormyrops_kingsleyae
ENSHCOG00000010234	ncl	52	60.260	ENSPSIG00000002361	-	54	60.156	Pelodiscus_sinensis
ENSHCOG00000010234	ncl	60	74.648	ENSPMGG00000004709	ncl	80	80.065	Periophthalmus_magnuspinnatus
ENSHCOG00000010234	ncl	52	58.073	ENSPCIG00000003293	-	53	58.031	Phascolarctos_cinereus
ENSHCOG00000010234	ncl	52	76.676	ENSPNYG00000020494	ncl	69	72.636	Pundamilia_nyererei
ENSHCOG00000010234	ncl	60	66.200	ENSPNAG00000006192	ncl	57	63.702	Pygocentrus_nattereri
ENSHCOG00000010234	ncl	51	53.846	ENSSHAG00000002702	-	59	53.665	Sarcophilus_harrisii
ENSHCOG00000010234	ncl	53	77.660	ENSSFOG00015008583	ncl	58	77.807	Scleropages_formosus
ENSHCOG00000010234	ncl	89	72.998	ENSSMAG00000021241	ncl	69	76.707	Scophthalmus_maximus
ENSHCOG00000010234	ncl	64	39.673	ENSSMAG00000007582	-	61	44.503	Scophthalmus_maximus
ENSHCOG00000010234	ncl	73	36.347	ENSSDUG00000010922	-	70	42.857	Seriola_dumerili
ENSHCOG00000010234	ncl	65	77.612	ENSSDUG00000006128	ncl	86	86.096	Seriola_dumerili
ENSHCOG00000010234	ncl	57	41.832	ENSSLDG00000015784	-	65	42.298	Seriola_lalandi_dorsalis
ENSHCOG00000010234	ncl	69	76.861	ENSSLDG00000002012	ncl	68	79.678	Seriola_lalandi_dorsalis
ENSHCOG00000010234	ncl	72	53.959	ENSSPUG00000008244	-	54	62.730	Sphenodon_punctatus
ENSHCOG00000010234	ncl	56	44.068	ENSSPAG00000001859	-	71	39.229	Stegastes_partitus
ENSHCOG00000010234	ncl	52	58.377	ENSTGUG00000009782	-	64	57.740	Taeniopygia_guttata
ENSHCOG00000010234	ncl	60	77.103	ENSTRUG00000008185	ncl	55	80.054	Takifugu_rubripes
ENSHCOG00000010234	ncl	52	80.533	ENSTNIG00000012186	ncl	77	80.319	Tetraodon_nigroviridis
ENSHCOG00000010234	ncl	52	41.207	ENSXCOG00000007369	-	89	41.207	Xiphophorus_couchianus
ENSHCOG00000010234	ncl	54	52.336	ENSXCOG00000003524	ncl	85	64.879	Xiphophorus_couchianus
ENSHCOG00000010234	ncl	53	81.649	ENSXMAG00000005914	ncl	69	75.835	Xiphophorus_maculatus