EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000010784 (Gene tree)
Gene ID: 109511266
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 7145 bases
Position: chrKV880534.1:465443-472587
Accession: 109511266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000022797	PPR	PF01535.20	4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000000151	-	2326	XM_019862208	ENSHCOP00000022797	665 (aa)	XP_019717767	-

Gene Model

Click here to download ENSHCOG00000010784's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000010784's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000010784	ptcd1	82	47.766	ENSG00000106246	PTCD1	83	47.521	Homo_sapiens
ENSHCOG00000010784	ptcd1	82	47.766	ENSG00000248919	ATP5MF-PTCD1	78	47.521	Homo_sapiens
ENSHCOG00000010784	ptcd1	89	55.678	ENSAPOG00000010679	ptcd1	96	54.976	Acanthochromis_polyacanthus
ENSHCOG00000010784	ptcd1	82	48.299	ENSAMEG00000006224	-	78	47.404	Ailuropoda_melanoleuca
ENSHCOG00000010784	ptcd1	94	60.181	ENSACIG00000017861	ptcd1	97	59.517	Amphilophus_citrinellus
ENSHCOG00000010784	ptcd1	89	57.845	ENSAOCG00000022617	ptcd1	94	56.825	Amphiprion_ocellaris
ENSHCOG00000010784	ptcd1	99	56.757	ENSAOCG00000020741	-	99	55.840	Amphiprion_ocellaris
ENSHCOG00000010784	ptcd1	99	57.041	ENSAPEG00000022632	ptcd1	99	56.125	Amphiprion_percula
ENSHCOG00000010784	ptcd1	97	57.607	ENSATEG00000007016	ptcd1	99	56.714	Anabas_testudineus
ENSHCOG00000010784	ptcd1	86	45.469	ENSAPLG00000006862	-	96	44.984	Anas_platyrhynchos
ENSHCOG00000010784	ptcd1	89	43.692	ENSACAG00000012871	-	85	44.136	Anolis_carolinensis
ENSHCOG00000010784	ptcd1	82	47.856	ENSANAG00000035790	-	86	47.782	Aotus_nancymaae
ENSHCOG00000010784	ptcd1	98	58.393	ENSACLG00000002824	ptcd1	98	57.819	Astatotilapia_calliptera
ENSHCOG00000010784	ptcd1	82	48.768	ENSAMXG00000037292	ptcd1	85	48.860	Astyanax_mexicanus
ENSHCOG00000010784	ptcd1	82	47.368	ENSBTAG00000020440	-	73	47.359	Bos_taurus
ENSHCOG00000010784	ptcd1	82	48.459	ENSCJAG00000015815	-	84	48.211	Callithrix_jacchus
ENSHCOG00000010784	ptcd1	83	47.993	ENSCAFG00000015055	-	79	47.571	Canis_familiaris
ENSHCOG00000010784	ptcd1	87	47.097	ENSCAFG00020014480	-	82	46.840	Canis_lupus_dingo
ENSHCOG00000010784	ptcd1	82	47.611	ENSCHIG00000027000	-	83	47.432	Capra_hircus
ENSHCOG00000010784	ptcd1	82	47.782	ENSTSYG00000029495	-	87	46.305	Carlito_syrichta
ENSHCOG00000010784	ptcd1	82	46.429	ENSCAPG00000014660	-	89	46.193	Cavia_aperea
ENSHCOG00000010784	ptcd1	82	46.939	ENSCPOG00000001780	-	83	46.701	Cavia_porcellus
ENSHCOG00000010784	ptcd1	82	47.952	ENSCCAG00000034025	-	84	47.708	Cebus_capucinus
ENSHCOG00000010784	ptcd1	82	48.448	ENSCATG00000040859	-	83	48.370	Cercocebus_atys
ENSHCOG00000010784	ptcd1	82	47.279	ENSCLAG00000006354	-	83	47.029	Chinchilla_lanigera
ENSHCOG00000010784	ptcd1	77	47.464	ENSCSAG00000017794	-	82	47.662	Chlorocebus_sabaeus
ENSHCOG00000010784	ptcd1	84	44.249	ENSCPBG00000020866	-	84	42.013	Chrysemys_picta_bellii
ENSHCOG00000010784	ptcd1	82	48.199	ENSCANG00000023441	-	83	48.027	Colobus_angolensis_palliatus
ENSHCOG00000010784	ptcd1	82	47.260	ENSCGRG00001023686	Ptcd1	83	47.341	Cricetulus_griseus_chok1gshd
ENSHCOG00000010784	ptcd1	82	47.260	ENSCGRG00000015031	Ptcd1	83	47.341	Cricetulus_griseus_crigri
ENSHCOG00000010784	ptcd1	95	54.434	ENSCSEG00000002378	ptcd1	93	54.128	Cynoglossus_semilaevis
ENSHCOG00000010784	ptcd1	98	58.884	ENSCVAG00000015826	ptcd1	97	57.500	Cyprinodon_variegatus
ENSHCOG00000010784	ptcd1	95	58.600	ENSCVAG00000003621	ptcd1	99	57.165	Cyprinodon_variegatus
ENSHCOG00000010784	ptcd1	82	51.443	ENSDARG00000076176	ptcd1	85	51.100	Danio_rerio
ENSHCOG00000010784	ptcd1	82	48.722	ENSDNOG00000009957	-	83	48.552	Dasypus_novemcinctus
ENSHCOG00000010784	ptcd1	82	47.019	ENSDORG00000000740	Ptcd1	85	46.870	Dipodomys_ordii
ENSHCOG00000010784	ptcd1	69	47.566	ENSEBUG00000014515	ptcd1	67	49.490	Eptatretus_burgeri
ENSHCOG00000010784	ptcd1	82	47.611	ENSEASG00005002480	-	83	47.959	Equus_asinus_asinus
ENSHCOG00000010784	ptcd1	82	47.782	ENSECAG00000016617	-	83	48.469	Equus_caballus
ENSHCOG00000010784	ptcd1	92	52.219	ENSELUG00000016517	ptcd1	92	51.036	Esox_lucius
ENSHCOG00000010784	ptcd1	82	47.538	ENSFCAG00000015069	-	83	47.530	Felis_catus
ENSHCOG00000010784	ptcd1	81	44.799	ENSFALG00000013803	-	87	44.268	Ficedula_albicollis
ENSHCOG00000010784	ptcd1	82	46.484	ENSFDAG00000006393	-	88	45.203	Fukomys_damarensis
ENSHCOG00000010784	ptcd1	77	64.325	ENSFHEG00000012491	ptcd1	94	63.519	Fundulus_heteroclitus
ENSHCOG00000010784	ptcd1	87	56.721	ENSGMOG00000007639	ptcd1	98	56.322	Gadus_morhua
ENSHCOG00000010784	ptcd1	81	43.980	ENSGALG00000004711	-	94	41.789	Gallus_gallus
ENSHCOG00000010784	ptcd1	99	55.202	ENSGAFG00000013175	ptcd1	99	55.282	Gambusia_affinis
ENSHCOG00000010784	ptcd1	87	64.484	ENSGACG00000016607	ptcd1	95	64.484	Gasterosteus_aculeatus
ENSHCOG00000010784	ptcd1	81	44.750	ENSGAGG00000021832	-	88	44.868	Gopherus_agassizii
ENSHCOG00000010784	ptcd1	82	47.595	ENSGGOG00000015123	-	83	47.856	Gorilla_gorilla
ENSHCOG00000010784	ptcd1	98	58.393	ENSHBUG00000018275	ptcd1	98	57.819	Haplochromis_burtoni
ENSHCOG00000010784	ptcd1	82	47.521	ENSHGLG00000017621	-	83	47.611	Heterocephalus_glaber_female
ENSHCOG00000010784	ptcd1	82	47.521	ENSHGLG00100007218	-	83	47.611	Heterocephalus_glaber_male
ENSHCOG00000010784	ptcd1	82	48.211	ENSSTOG00000001682	-	83	48.034	Ictidomys_tridecemlineatus
ENSHCOG00000010784	ptcd1	82	47.579	ENSJJAG00000000319	Ptcd1	85	47.716	Jaculus_jaculus
ENSHCOG00000010784	ptcd1	98	56.831	ENSKMAG00000008708	ptcd1	98	56.105	Kryptolebias_marmoratus
ENSHCOG00000010784	ptcd1	98	55.775	ENSLBEG00000008061	ptcd1	98	55.134	Labrus_bergylta
ENSHCOG00000010784	ptcd1	82	48.282	ENSLACG00000011172	ptcd1	82	47.938	Latimeria_chalumnae
ENSHCOG00000010784	ptcd1	83	50.850	ENSLOCG00000004833	ptcd1	93	50.850	Lepisosteus_oculatus
ENSHCOG00000010784	ptcd1	82	47.208	ENSLAFG00000002588	-	83	47.208	Loxodonta_africana
ENSHCOG00000010784	ptcd1	82	48.448	ENSMFAG00000041324	-	85	47.833	Macaca_fascicularis
ENSHCOG00000010784	ptcd1	82	48.276	ENSMMUG00000030408	-	85	47.667	Macaca_mulatta
ENSHCOG00000010784	ptcd1	82	48.448	ENSMNEG00000043786	-	85	47.833	Macaca_nemestrina
ENSHCOG00000010784	ptcd1	82	36.684	ENSMLEG00000031179	-	81	37.719	Mandrillus_leucophaeus
ENSHCOG00000010784	ptcd1	99	57.447	ENSMAMG00000007623	ptcd1	98	56.879	Mastacembelus_armatus
ENSHCOG00000010784	ptcd1	98	58.250	ENSMZEG00005012722	ptcd1	98	57.676	Maylandia_zebra
ENSHCOG00000010784	ptcd1	75	47.330	ENSMGAG00000004211	-	77	45.238	Meleagris_gallopavo
ENSHCOG00000010784	ptcd1	82	46.404	ENSMICG00000017428	-	83	47.089	Microcebus_murinus
ENSHCOG00000010784	ptcd1	99	56.768	ENSMMOG00000020243	ptcd1	99	56.311	Mola_mola
ENSHCOG00000010784	ptcd1	85	44.588	ENSMODG00000001350	-	83	44.084	Monodelphis_domestica
ENSHCOG00000010784	ptcd1	96	57.687	ENSMALG00000018442	ptcd1	97	56.815	Monopterus_albus
ENSHCOG00000010784	ptcd1	85	46.090	MGP_CAROLIEiJ_G0028011	Ptcd1	85	45.743	Mus_caroli
ENSHCOG00000010784	ptcd1	85	45.743	ENSMUSG00000029624	Ptcd1	85	46.090	Mus_musculus
ENSHCOG00000010784	ptcd1	84	46.500	MGP_PahariEiJ_G0024580	Ptcd1	86	45.987	Mus_pahari
ENSHCOG00000010784	ptcd1	85	45.910	MGP_SPRETEiJ_G0029012	Ptcd1	85	45.910	Mus_spretus
ENSHCOG00000010784	ptcd1	82	47.208	ENSMPUG00000016518	-	83	47.049	Mustela_putorius_furo
ENSHCOG00000010784	ptcd1	82	48.376	ENSMLUG00000010994	-	79	48.080	Myotis_lucifugus
ENSHCOG00000010784	ptcd1	96	56.681	ENSNBRG00000010079	ptcd1	96	58.069	Neolamprologus_brichardi
ENSHCOG00000010784	ptcd1	72	47.399	ENSNLEG00000011060	-	87	47.399	Nomascus_leucogenys
ENSHCOG00000010784	ptcd1	82	46.350	ENSMEUG00000006930	-	84	45.671	Notamacropus_eugenii
ENSHCOG00000010784	ptcd1	71	57.658	ENSOPRG00000013647	-	73	58.929	Ochotona_princeps
ENSHCOG00000010784	ptcd1	85	59.222	ENSONIG00000003168	ptcd1	98	58.545	Oreochromis_niloticus
ENSHCOG00000010784	ptcd1	79	45.026	ENSOANG00000007728	-	74	45.455	Ornithorhynchus_anatinus
ENSHCOG00000010784	ptcd1	82	47.952	ENSOCUG00000010584	-	82	47.708	Oryctolagus_cuniculus
ENSHCOG00000010784	ptcd1	87	61.000	ENSORLG00000009275	ptcd1	89	60.333	Oryzias_latipes
ENSHCOG00000010784	ptcd1	94	56.884	ENSORLG00020000988	ptcd1	96	56.278	Oryzias_latipes_hni
ENSHCOG00000010784	ptcd1	94	56.430	ENSORLG00015010557	ptcd1	96	55.825	Oryzias_latipes_hsok
ENSHCOG00000010784	ptcd1	94	59.571	ENSOMEG00000020627	ptcd1	97	58.959	Oryzias_melastigma
ENSHCOG00000010784	ptcd1	82	45.826	ENSOGAG00000010877	-	84	45.763	Otolemur_garnettii
ENSHCOG00000010784	ptcd1	82	44.576	ENSOARG00000018676	-	83	44.407	Ovis_aries
ENSHCOG00000010784	ptcd1	82	47.423	ENSPPAG00000036024	-	83	47.684	Pan_paniscus
ENSHCOG00000010784	ptcd1	82	47.708	ENSPPRG00000003478	-	84	47.700	Panthera_pardus
ENSHCOG00000010784	ptcd1	82	47.595	ENSPTRG00000019452	-	83	47.856	Pan_troglodytes
ENSHCOG00000010784	ptcd1	82	48.448	ENSPANG00000016730	-	83	48.370	Papio_anubis
ENSHCOG00000010784	ptcd1	82	50.441	ENSPKIG00000014215	ptcd1	84	49.912	Paramormyrops_kingsleyae
ENSHCOG00000010784	ptcd1	82	43.814	ENSPSIG00000011184	-	98	44.330	Pelodiscus_sinensis
ENSHCOG00000010784	ptcd1	72	40.655	ENSPMAG00000009667	ptcd1	100	40.655	Petromyzon_marinus
ENSHCOG00000010784	ptcd1	82	44.667	ENSPCIG00000024778	-	85	43.720	Phascolarctos_cinereus
ENSHCOG00000010784	ptcd1	91	58.787	ENSPFOG00000004458	ptcd1	91	58.842	Poecilia_formosa
ENSHCOG00000010784	ptcd1	91	58.750	ENSPLAG00000011051	ptcd1	91	59.277	Poecilia_latipinna
ENSHCOG00000010784	ptcd1	92	58.796	ENSPMEG00000020547	ptcd1	92	58.423	Poecilia_mexicana
ENSHCOG00000010784	ptcd1	92	58.669	ENSPREG00000000059	ptcd1	92	58.255	Poecilia_reticulata
ENSHCOG00000010784	ptcd1	82	48.459	ENSPPYG00000017377	-	88	48.288	Pongo_abelii
ENSHCOG00000010784	ptcd1	72	52.000	ENSPCAG00000001852	-	81	52.000	Procavia_capensis
ENSHCOG00000010784	ptcd1	82	46.816	ENSPCOG00000018596	-	83	47.350	Propithecus_coquereli
ENSHCOG00000010784	ptcd1	66	54.924	ENSPVAG00000007529	-	56	54.924	Pteropus_vampyrus
ENSHCOG00000010784	ptcd1	98	58.106	ENSPNYG00000019993	ptcd1	98	57.532	Pundamilia_nyererei
ENSHCOG00000010784	ptcd1	83	51.597	ENSPNAG00000014931	ptcd1	91	48.678	Pygocentrus_nattereri
ENSHCOG00000010784	ptcd1	82	47.251	ENSRNOG00000000987	Ptcd1	85	46.827	Rattus_norvegicus
ENSHCOG00000010784	ptcd1	82	48.542	ENSRBIG00000043393	-	83	48.370	Rhinopithecus_bieti
ENSHCOG00000010784	ptcd1	82	48.542	ENSRROG00000036420	-	83	48.370	Rhinopithecus_roxellana
ENSHCOG00000010784	ptcd1	82	48.205	ENSSBOG00000024114	-	84	48.294	Saimiri_boliviensis_boliviensis
ENSHCOG00000010784	ptcd1	85	45.620	ENSSHAG00000011376	-	92	45.124	Sarcophilus_harrisii
ENSHCOG00000010784	ptcd1	83	51.490	ENSSFOG00015007909	ptcd1	82	50.993	Scleropages_formosus
ENSHCOG00000010784	ptcd1	88	56.822	ENSSMAG00000000218	ptcd1	99	56.340	Scophthalmus_maximus
ENSHCOG00000010784	ptcd1	95	60.534	ENSSDUG00000015671	ptcd1	98	60.030	Seriola_dumerili
ENSHCOG00000010784	ptcd1	94	60.301	ENSSLDG00000014261	ptcd1	97	57.887	Seriola_lalandi_dorsalis
ENSHCOG00000010784	ptcd1	82	43.729	ENSSPUG00000003540	-	81	43.428	Sphenodon_punctatus
ENSHCOG00000010784	ptcd1	99	57.302	ENSSPAG00000011049	ptcd1	99	56.606	Stegastes_partitus
ENSHCOG00000010784	ptcd1	82	48.889	ENSSSCG00000007622	-	88	48.041	Sus_scrofa
ENSHCOG00000010784	ptcd1	81	45.565	ENSTGUG00000007563	-	94	45.739	Taeniopygia_guttata
ENSHCOG00000010784	ptcd1	96	55.971	ENSTRUG00000013471	ptcd1	99	54.006	Takifugu_rubripes
ENSHCOG00000010784	ptcd1	93	58.218	ENSTNIG00000008271	ptcd1	94	57.846	Tetraodon_nigroviridis
ENSHCOG00000010784	ptcd1	90	44.444	ENSTBEG00000011021	-	93	44.292	Tupaia_belangeri
ENSHCOG00000010784	ptcd1	82	47.423	ENSTTRG00000003006	-	84	47.251	Tursiops_truncatus
ENSHCOG00000010784	ptcd1	82	47.449	ENSUAMG00000008049	-	83	47.530	Ursus_americanus
ENSHCOG00000010784	ptcd1	82	48.469	ENSVVUG00000008836	-	84	48.123	Vulpes_vulpes
ENSHCOG00000010784	ptcd1	85	44.518	ENSXETG00000009891	ptcd1	87	43.842	Xenopus_tropicalis
ENSHCOG00000010784	ptcd1	91	58.003	ENSXMAG00000015540	ptcd1	91	57.937	Xiphophorus_maculatus