EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000011350 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4888 bases
Position: chrKV880216.1:1799647-1804534
Accession: 109524121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000009010	RRM_1	PF00076.22	1.6e-31	1	2
ENSHCOP00000009010	RRM_1	PF00076.22	1.6e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015014	-	1136	XM_019883742	ENSHCOP00000009010	312 (aa)	XP_019739301	-

Gene Model

Click here to download ENSHCOG00000011350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000011350's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000011350	trnau1apb	63	31.285	ENSHCOG00000012694	pabpc4	64	31.285
ENSHCOG00000011350	trnau1apb	55	31.609	ENSHCOG00000004701	tial1	70	31.609
ENSHCOG00000011350	trnau1apb	57	32.099	ENSHCOG00000015240	elavl1a	74	32.099
ENSHCOG00000011350	trnau1apb	70	48.230	ENSHCOG00000014770	trnau1apa	72	48.230
ENSHCOG00000011350	trnau1apb	55	32.759	ENSHCOG00000005356	-	68	32.184

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000011350	trnau1apb	78	74.897	ENSAPOG00000010086	trnau1apb	67	75.983	Acanthochromis_polyacanthus
ENSHCOG00000011350	trnau1apb	75	80.851	ENSACIG00000001863	trnau1apb	72	82.096	Amphilophus_citrinellus
ENSHCOG00000011350	trnau1apb	79	80.645	ENSAOCG00000011891	trnau1apb	68	83.117	Amphiprion_ocellaris
ENSHCOG00000011350	trnau1apb	70	82.192	ENSAPEG00000008029	trnau1apb	69	82.684	Amphiprion_percula
ENSHCOG00000011350	trnau1apb	78	80.816	ENSATEG00000002196	trnau1apb	68	83.478	Anabas_testudineus
ENSHCOG00000011350	trnau1apb	75	81.702	ENSACLG00000003016	trnau1apb	70	82.969	Astatotilapia_calliptera
ENSHCOG00000011350	trnau1apb	81	64.844	ENSAMXG00000001805	trnau1apb	78	72.294	Astyanax_mexicanus
ENSHCOG00000011350	trnau1apb	78	78.367	ENSCSEG00000018215	trnau1apb	68	80.603	Cynoglossus_semilaevis
ENSHCOG00000011350	trnau1apb	66	79.710	ENSCVAG00000017866	trnau1apb	66	78.972	Cyprinodon_variegatus
ENSHCOG00000011350	trnau1apb	73	70.563	ENSDARG00000056475	trnau1apb	71	72.727	Danio_rerio
ENSHCOG00000011350	trnau1apb	73	71.179	ENSELUG00000016683	trnau1apb	69	73.707	Esox_lucius
ENSHCOG00000011350	trnau1apb	84	77.186	ENSFHEG00000001267	trnau1apb	67	82.609	Fundulus_heteroclitus
ENSHCOG00000011350	trnau1apb	76	76.250	ENSGMOG00000001160	trnau1apb	69	78.879	Gadus_morhua
ENSHCOG00000011350	trnau1apb	57	90.960	ENSGAFG00000006770	trnau1apb	58	90.960	Gambusia_affinis
ENSHCOG00000011350	trnau1apb	73	83.117	ENSGACG00000014944	trnau1apb	70	83.117	Gasterosteus_aculeatus
ENSHCOG00000011350	trnau1apb	78	80.738	ENSHBUG00000018944	trnau1apb	78	82.018	Haplochromis_burtoni
ENSHCOG00000011350	trnau1apb	81	64.844	ENSIPUG00000008843	tsp1l	71	72.727	Ictalurus_punctatus
ENSHCOG00000011350	trnau1apb	70	81.651	ENSKMAG00000010082	trnau1apb	67	80.870	Kryptolebias_marmoratus
ENSHCOG00000011350	trnau1apb	77	80.913	ENSLBEG00000020480	trnau1apb	69	83.117	Labrus_bergylta
ENSHCOG00000011350	trnau1apb	88	54.874	ENSLOCG00000013175	trnau1apb	70	59.914	Lepisosteus_oculatus
ENSHCOG00000011350	trnau1apb	77	81.667	ENSMAMG00000012192	trnau1apb	68	83.043	Mastacembelus_armatus
ENSHCOG00000011350	trnau1apb	78	80.738	ENSMZEG00005014852	trnau1apb	67	82.969	Maylandia_zebra
ENSHCOG00000011350	trnau1apb	82	67.647	ENSMMOG00000021521	trnau1apb	78	67.170	Mola_mola
ENSHCOG00000011350	trnau1apb	57	90.960	ENSMALG00000003772	trnau1apb	60	89.011	Monopterus_albus
ENSHCOG00000011350	trnau1apb	75	81.702	ENSNBRG00000000751	trnau1apb	72	82.969	Neolamprologus_brichardi
ENSHCOG00000011350	trnau1apb	81	74.118	ENSONIG00000016639	trnau1apb	75	82.805	Oreochromis_niloticus
ENSHCOG00000011350	trnau1apb	71	81.250	ENSORLG00000013265	trnau1apb	67	81.739	Oryzias_latipes
ENSHCOG00000011350	trnau1apb	78	80.000	ENSORLG00020004464	trnau1apb	67	81.739	Oryzias_latipes_hni
ENSHCOG00000011350	trnau1apb	78	80.000	ENSORLG00015021098	trnau1apb	67	81.739	Oryzias_latipes_hsok
ENSHCOG00000011350	trnau1apb	71	80.804	ENSOMEG00000016531	trnau1apb	67	83.043	Oryzias_melastigma
ENSHCOG00000011350	trnau1apb	80	62.205	ENSPKIG00000007995	trnau1apb	76	67.635	Paramormyrops_kingsleyae
ENSHCOG00000011350	trnau1apb	71	75.210	ENSPMGG00000018509	trnau1apb	81	75.630	Periophthalmus_magnuspinnatus
ENSHCOG00000011350	trnau1apb	78	78.138	ENSPFOG00000003938	trnau1apb	71	80.357	Poecilia_formosa
ENSHCOG00000011350	trnau1apb	78	78.138	ENSPLAG00000015480	trnau1apb	66	79.913	Poecilia_latipinna
ENSHCOG00000011350	trnau1apb	78	78.138	ENSPMEG00000012743	trnau1apb	66	79.913	Poecilia_mexicana
ENSHCOG00000011350	trnau1apb	78	77.328	ENSPREG00000015035	trnau1apb	66	79.039	Poecilia_reticulata
ENSHCOG00000011350	trnau1apb	75	77.872	ENSPNYG00000012127	trnau1apb	70	79.039	Pundamilia_nyererei
ENSHCOG00000011350	trnau1apb	81	66.016	ENSPNAG00000019138	trnau1apb	70	71.429	Pygocentrus_nattereri
ENSHCOG00000011350	trnau1apb	58	79.670	ENSSFOG00015014158	trnau1apb	71	69.421	Scleropages_formosus
ENSHCOG00000011350	trnau1apb	78	80.000	ENSSMAG00000001745	trnau1apb	69	82.609	Scophthalmus_maximus
ENSHCOG00000011350	trnau1apb	78	80.000	ENSSDUG00000011109	trnau1apb	68	83.478	Seriola_dumerili
ENSHCOG00000011350	trnau1apb	78	79.592	ENSSLDG00000012947	trnau1apb	68	83.043	Seriola_lalandi_dorsalis
ENSHCOG00000011350	trnau1apb	77	82.231	ENSSPAG00000006917	trnau1apb	75	81.818	Stegastes_partitus
ENSHCOG00000011350	trnau1apb	77	77.083	ENSTRUG00000008608	trnau1apb	63	84.324	Takifugu_rubripes
ENSHCOG00000011350	trnau1apb	70	80.995	ENSTNIG00000000916	trnau1apb	74	80.995	Tetraodon_nigroviridis
ENSHCOG00000011350	trnau1apb	72	73.128	ENSXCOG00000007974	trnau1apb	60	74.641	Xiphophorus_couchianus
ENSHCOG00000011350	trnau1apb	78	78.947	ENSXMAG00000029918	trnau1apb	66	80.786	Xiphophorus_maculatus