EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000011388 (Gene tree)
Gene ID: 109508436
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 13655 bases
Position: chrKV880522.1:1095217-1108871
Accession: 109508436
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023125	KH_1	PF00013.29	2.8e-06	1	1
ENSHCOP00000023125	zf-CCHC	PF00098.23	0.00033	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000025649	-	2886	XM_019858408	ENSHCOP00000023125	669 (aa)	XP_019713967	-

Gene Model

Click here to download ENSHCOG00000011388's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000011388's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000011388	sf1	97	87.424	ENSAPOG00000012341	sf1	69	87.660	Acanthochromis_polyacanthus
ENSHCOG00000011388	sf1	58	76.755	ENSAMEG00000017828	SF1	58	80.829	Ailuropoda_melanoleuca
ENSHCOG00000011388	sf1	97	87.595	ENSAOCG00000010934	sf1	69	87.500	Amphiprion_ocellaris
ENSHCOG00000011388	sf1	97	87.595	ENSAPEG00000009498	sf1	69	87.500	Amphiprion_percula
ENSHCOG00000011388	sf1	67	86.534	ENSATEG00000001894	sf1	69	86.141	Anabas_testudineus
ENSHCOG00000011388	sf1	59	76.683	ENSANAG00000026664	-	89	81.088	Aotus_nancymaae
ENSHCOG00000011388	sf1	84	64.250	ENSANAG00000022607	-	89	71.164	Aotus_nancymaae
ENSHCOG00000011388	sf1	68	87.389	ENSACLG00000007633	sf1	72	85.319	Astatotilapia_calliptera
ENSHCOG00000011388	sf1	68	83.516	ENSAMXG00000003630	sf1	61	82.692	Astyanax_mexicanus
ENSHCOG00000011388	sf1	58	76.755	ENSBTAG00000001035	SF1	62	81.088	Bos_taurus
ENSHCOG00000011388	sf1	58	76.755	ENSCJAG00000002780	SF1	76	67.619	Callithrix_jacchus
ENSHCOG00000011388	sf1	58	76.755	ENSCAFG00000014239	SF1	59	81.088	Canis_familiaris
ENSHCOG00000011388	sf1	58	76.755	ENSCAFG00020014381	SF1	59	81.088	Canis_lupus_dingo
ENSHCOG00000011388	sf1	58	76.755	ENSCHIG00000025867	SF1	69	81.088	Capra_hircus
ENSHCOG00000011388	sf1	58	76.755	ENSCAPG00000010762	SF1	66	81.102	Cavia_aperea
ENSHCOG00000011388	sf1	58	76.755	ENSCPOG00000012290	SF1	69	81.102	Cavia_porcellus
ENSHCOG00000011388	sf1	58	70.025	ENSCCAG00000023781	-	83	71.204	Cebus_capucinus
ENSHCOG00000011388	sf1	59	76.699	ENSCCAG00000037881	SF1	89	81.088	Cebus_capucinus
ENSHCOG00000011388	sf1	58	76.942	ENSCATG00000011564	SF1	89	80.628	Cercocebus_atys
ENSHCOG00000011388	sf1	58	76.755	ENSCSAG00000007258	SF1	69	81.088	Chlorocebus_sabaeus
ENSHCOG00000011388	sf1	56	71.357	ENSCHOG00000006008	SF1	67	75.683	Choloepus_hoffmanni
ENSHCOG00000011388	sf1	62	79.059	ENSCPBG00000023763	SF1	54	76.267	Chrysemys_picta_bellii
ENSHCOG00000011388	sf1	60	56.563	ENSCING00000005564	-	92	56.061	Ciona_intestinalis
ENSHCOG00000011388	sf1	79	49.376	ENSCSAVG00000009055	-	72	62.092	Ciona_savignyi
ENSHCOG00000011388	sf1	58	77.193	ENSCANG00000042201	SF1	91	79.639	Colobus_angolensis_palliatus
ENSHCOG00000011388	sf1	58	76.998	ENSCGRG00001003677	Sf1	66	81.606	Cricetulus_griseus_chok1gshd
ENSHCOG00000011388	sf1	58	76.998	ENSCGRG00000001708	Sf1	69	81.039	Cricetulus_griseus_crigri
ENSHCOG00000011388	sf1	97	86.667	ENSCSEG00000014375	sf1	67	86.624	Cynoglossus_semilaevis
ENSHCOG00000011388	sf1	98	85.370	ENSCVAG00000001670	sf1	69	84.894	Cyprinodon_variegatus
ENSHCOG00000011388	sf1	84	82.187	ENSDARG00000008188	sf1	67	89.351	Danio_rerio
ENSHCOG00000011388	sf1	58	76.998	ENSDNOG00000001282	SF1	69	81.347	Dasypus_novemcinctus
ENSHCOG00000011388	sf1	58	76.755	ENSDORG00000016334	Sf1	59	81.088	Dipodomys_ordii
ENSHCOG00000011388	sf1	58	71.182	ENSETEG00000012830	SF1	52	74.599	Echinops_telfairi
ENSHCOG00000011388	sf1	86	47.904	ENSEBUG00000012728	sf1	61	56.522	Eptatretus_burgeri
ENSHCOG00000011388	sf1	58	76.755	ENSEASG00005018272	SF1	69	81.088	Equus_asinus_asinus
ENSHCOG00000011388	sf1	58	76.755	ENSECAG00000024544	SF1	69	81.088	Equus_caballus
ENSHCOG00000011388	sf1	52	76.676	ENSEEUG00000001058	SF1	84	81.818	Erinaceus_europaeus
ENSHCOG00000011388	sf1	77	77.467	ENSELUG00000013225	sf1	63	82.158	Esox_lucius
ENSHCOG00000011388	sf1	58	76.755	ENSFCAG00000012231	SF1	76	68.008	Felis_catus
ENSHCOG00000011388	sf1	58	76.755	ENSFDAG00000009833	SF1	66	81.365	Fukomys_damarensis
ENSHCOG00000011388	sf1	97	82.979	ENSFHEG00000022656	sf1	70	85.593	Fundulus_heteroclitus
ENSHCOG00000011388	sf1	71	78.992	ENSGMOG00000007469	sf1	60	93.958	Gadus_morhua
ENSHCOG00000011388	sf1	89	85.124	ENSGAFG00000019284	sf1	76	85.319	Gambusia_affinis
ENSHCOG00000011388	sf1	68	87.500	ENSHBUG00000011598	sf1	70	85.654	Haplochromis_burtoni
ENSHCOG00000011388	sf1	58	76.755	ENSHGLG00000009541	SF1	66	81.088	Heterocephalus_glaber_female
ENSHCOG00000011388	sf1	58	76.755	ENSHGLG00100013879	-	66	81.365	Heterocephalus_glaber_male
ENSHCOG00000011388	sf1	55	70.270	ENSHGLG00100008255	-	71	77.095	Heterocephalus_glaber_male
ENSHCOG00000011388	sf1	58	76.755	ENSSTOG00000009790	-	59	81.365	Ictidomys_tridecemlineatus
ENSHCOG00000011388	sf1	54	70.430	ENSSTOG00000024353	-	68	71.244	Ictidomys_tridecemlineatus
ENSHCOG00000011388	sf1	58	76.998	ENSJJAG00000011788	Sf1	59	81.347	Jaculus_jaculus
ENSHCOG00000011388	sf1	84	85.614	ENSKMAG00000005854	sf1	72	84.534	Kryptolebias_marmoratus
ENSHCOG00000011388	sf1	86	86.580	ENSLBEG00000019836	sf1	74	85.474	Labrus_bergylta
ENSHCOG00000011388	sf1	68	78.390	ENSLOCG00000002130	sf1	69	78.323	Lepisosteus_oculatus
ENSHCOG00000011388	sf1	58	77.859	ENSLAFG00000007201	SF1	64	81.510	Loxodonta_africana
ENSHCOG00000011388	sf1	58	76.942	ENSMFAG00000033122	SF1	89	80.628	Macaca_fascicularis
ENSHCOG00000011388	sf1	55	80.106	ENSMMUG00000022606	SF1	92	81.088	Macaca_mulatta
ENSHCOG00000011388	sf1	58	76.942	ENSMNEG00000037901	SF1	89	80.628	Macaca_nemestrina
ENSHCOG00000011388	sf1	59	76.429	ENSMLEG00000040706	SF1	89	80.902	Mandrillus_leucophaeus
ENSHCOG00000011388	sf1	67	89.059	ENSMAMG00000001780	sf1	70	87.738	Mastacembelus_armatus
ENSHCOG00000011388	sf1	68	87.500	ENSMZEG00005009196	sf1	70	85.654	Maylandia_zebra
ENSHCOG00000011388	sf1	58	76.998	ENSMAUG00000014064	Sf1	66	81.606	Mesocricetus_auratus
ENSHCOG00000011388	sf1	59	75.787	ENSMICG00000001202	SF1	89	80.879	Microcebus_murinus
ENSHCOG00000011388	sf1	58	74.941	ENSMOCG00000022038	Sf1	66	81.606	Microtus_ochrogaster
ENSHCOG00000011388	sf1	67	85.398	ENSMMOG00000020474	sf1	69	84.188	Mola_mola
ENSHCOG00000011388	sf1	62	75.281	ENSMODG00000029407	SF1	84	79.597	Monodelphis_domestica
ENSHCOG00000011388	sf1	67	84.071	ENSMALG00000020521	sf1	75	83.120	Monopterus_albus
ENSHCOG00000011388	sf1	58	76.998	MGP_CAROLIEiJ_G0022607	Sf1	99	94.361	Mus_caroli
ENSHCOG00000011388	sf1	58	76.998	ENSMUSG00000024949	Sf1	99	94.361	Mus_musculus
ENSHCOG00000011388	sf1	58	76.998	MGP_PahariEiJ_G0014101	Sf1	99	94.361	Mus_pahari
ENSHCOG00000011388	sf1	58	76.998	MGP_SPRETEiJ_G0023518	Sf1	99	94.361	Mus_spretus
ENSHCOG00000011388	sf1	58	76.755	ENSMPUG00000012684	SF1	59	80.256	Mustela_putorius_furo
ENSHCOG00000011388	sf1	58	76.513	ENSMLUG00000015217	-	59	81.347	Myotis_lucifugus
ENSHCOG00000011388	sf1	63	72.829	ENSMLUG00000029800	-	65	77.461	Myotis_lucifugus
ENSHCOG00000011388	sf1	58	76.998	ENSNGAG00000005550	Sf1	66	81.347	Nannospalax_galili
ENSHCOG00000011388	sf1	68	87.389	ENSNBRG00000017606	sf1	72	85.504	Neolamprologus_brichardi
ENSHCOG00000011388	sf1	58	77.193	ENSNLEG00000005236	-	91	79.639	Nomascus_leucogenys
ENSHCOG00000011388	sf1	58	75.476	ENSMEUG00000013424	SF1	72	80.206	Notamacropus_eugenii
ENSHCOG00000011388	sf1	52	76.676	ENSOPRG00000005008	SF1	67	81.525	Ochotona_princeps
ENSHCOG00000011388	sf1	68	87.281	ENSONIG00000015728	sf1	70	85.443	Oreochromis_niloticus
ENSHCOG00000011388	sf1	58	76.755	ENSOCUG00000026486	SF1	60	80.829	Oryctolagus_cuniculus
ENSHCOG00000011388	sf1	69	85.043	ENSORLG00000011853	sf1	68	85.043	Oryzias_latipes
ENSHCOG00000011388	sf1	69	85.470	ENSORLG00020011834	sf1	68	85.470	Oryzias_latipes_hni
ENSHCOG00000011388	sf1	68	85.621	ENSORLG00015012855	sf1	68	84.289	Oryzias_latipes_hsok
ENSHCOG00000011388	sf1	68	85.529	ENSOMEG00000005210	sf1	69	84.421	Oryzias_melastigma
ENSHCOG00000011388	sf1	58	76.755	ENSOGAG00000016196	SF1	59	81.088	Otolemur_garnettii
ENSHCOG00000011388	sf1	58	76.755	ENSOARG00000009166	SF1	66	81.088	Ovis_aries
ENSHCOG00000011388	sf1	58	77.859	ENSPPAG00000002799	-	92	79.639	Pan_paniscus
ENSHCOG00000011388	sf1	58	76.755	ENSPPRG00000013566	SF1	59	81.452	Panthera_pardus
ENSHCOG00000011388	sf1	58	76.755	ENSPTIG00000016141	SF1	68	81.088	Panthera_tigris_altaica
ENSHCOG00000011388	sf1	60	76.960	ENSPTRG00000003846	SF1	91	79.639	Pan_troglodytes
ENSHCOG00000011388	sf1	58	76.942	ENSPANG00000020754	SF1	89	80.628	Papio_anubis
ENSHCOG00000011388	sf1	59	76.372	ENSPEMG00000010463	Sf1	66	81.606	Peromyscus_maniculatus_bairdii
ENSHCOG00000011388	sf1	58	75.414	ENSPCIG00000018173	SF1	63	79.597	Phascolarctos_cinereus
ENSHCOG00000011388	sf1	97	86.191	ENSPFOG00000013683	sf1	69	85.957	Poecilia_formosa
ENSHCOG00000011388	sf1	90	86.460	ENSPLAG00000018076	sf1	64	86.085	Poecilia_latipinna
ENSHCOG00000011388	sf1	97	86.191	ENSPMEG00000005726	sf1	69	85.957	Poecilia_mexicana
ENSHCOG00000011388	sf1	97	86.343	ENSPREG00000004155	sf1	69	85.745	Poecilia_reticulata
ENSHCOG00000011388	sf1	58	76.755	ENSPPYG00000003098	-	71	81.088	Pongo_abelii
ENSHCOG00000011388	sf1	59	75.787	ENSPCOG00000027546	SF1	89	80.879	Propithecus_coquereli
ENSHCOG00000011388	sf1	60	76.722	ENSPVAG00000016938	SF1	76	69.396	Pteropus_vampyrus
ENSHCOG00000011388	sf1	68	87.939	ENSPNYG00000004673	sf1	70	85.865	Pundamilia_nyererei
ENSHCOG00000011388	sf1	68	82.276	ENSPNAG00000013072	sf1	69	81.818	Pygocentrus_nattereri
ENSHCOG00000011388	sf1	58	76.998	ENSRNOG00000021085	Sf1	61	81.073	Rattus_norvegicus
ENSHCOG00000011388	sf1	55	80.106	ENSRBIG00000042818	SF1	89	80.628	Rhinopithecus_bieti
ENSHCOG00000011388	sf1	67	69.528	ENSRROG00000045655	SF1	90	79.896	Rhinopithecus_roxellana
ENSHCOG00000011388	sf1	81	65.240	ENSSBOG00000022267	-	86	71.588	Saimiri_boliviensis_boliviensis
ENSHCOG00000011388	sf1	70	69.835	ENSSHAG00000006841	SF1	72	81.026	Sarcophilus_harrisii
ENSHCOG00000011388	sf1	97	76.029	ENSSFOG00015021978	sf1	68	80.169	Scleropages_formosus
ENSHCOG00000011388	sf1	84	84.337	ENSSMAG00000007549	sf1	71	87.284	Scophthalmus_maximus
ENSHCOG00000011388	sf1	67	88.210	ENSSDUG00000003903	sf1	72	87.764	Seriola_dumerili
ENSHCOG00000011388	sf1	67	87.991	ENSSLDG00000013075	sf1	70	87.553	Seriola_lalandi_dorsalis
ENSHCOG00000011388	sf1	58	72.881	ENSSARG00000008180	SF1	72	77.165	Sorex_araneus
ENSHCOG00000011388	sf1	59	77.622	ENSSPUG00000012907	SF1	59	85.399	Sphenodon_punctatus
ENSHCOG00000011388	sf1	97	87.746	ENSSPAG00000019060	sf1	69	87.500	Stegastes_partitus
ENSHCOG00000011388	sf1	58	76.998	ENSSSCG00000013021	SF1	69	81.347	Sus_scrofa
ENSHCOG00000011388	sf1	72	70.722	ENSTNIG00000004820	sf1	74	75.062	Tetraodon_nigroviridis
ENSHCOG00000011388	sf1	58	72.030	ENSTBEG00000013133	SF1	54	75.733	Tupaia_belangeri
ENSHCOG00000011388	sf1	58	71.429	ENSTTRG00000008857	SF1	69	76.378	Tursiops_truncatus
ENSHCOG00000011388	sf1	58	78.818	ENSUMAG00000007268	SF1	71	81.088	Ursus_maritimus
ENSHCOG00000011388	sf1	58	76.755	ENSVVUG00000028585	SF1	69	81.088	Vulpes_vulpes
ENSHCOG00000011388	sf1	85	72.213	ENSXETG00000008434	sf1	65	82.507	Xenopus_tropicalis
ENSHCOG00000011388	sf1	54	90.411	ENSXCOG00000003704	sf1	72	87.728	Xiphophorus_couchianus
ENSHCOG00000011388	sf1	97	86.495	ENSXMAG00000007822	sf1	72	86.170	Xiphophorus_maculatus