EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000011403 (Gene tree)
Gene ID: 109508436
Gene Symbol: rbm4.1
Alias: rbm4|wu:fc31f07|wu:fc57h11
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 5178 bases
Position: chrKV880522.1:1090019-1095196
Accession: 109508436
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023130	zf-CCHC	PF00098.23	4.6e-08	1	1
ENSHCOP00000023132	zf-CCHC	PF00098.23	4.6e-08	1	1
ENSHCOP00000023130	RRM_5	PF13893.6	1e-07	1	1
ENSHCOP00000023132	RRM_5	PF13893.6	1e-07	1	1
ENSHCOP00000023130	RRM_1	PF00076.22	9.7e-30	1	2
ENSHCOP00000023130	RRM_1	PF00076.22	9.7e-30	2	2
ENSHCOP00000023132	RRM_1	PF00076.22	9.7e-30	1	2
ENSHCOP00000023132	RRM_1	PF00076.22	9.7e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000025660	-	2754	-	ENSHCOP00000023132	394 (aa)	-	UPI00094E07D4
ENSHCOT00000015062	-	2704	XM_019858409	ENSHCOP00000023130	394 (aa)	XP_019713968	UPI00094E07D4

Gene Model

Click here to download ENSHCOG00000011403's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000011403's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000011403	rbm4.1	93	33.155	ENSHCOG00000012571	rbm14b	95	48.966

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000011403	rbm4.1	98	71.072	ENSAPOG00000012353	rbm4.1	96	69.533	Acanthochromis_polyacanthus
ENSHCOG00000011403	rbm4.1	98	71.500	ENSACIG00000016482	rbm4.1	96	71.007	Amphilophus_citrinellus
ENSHCOG00000011403	rbm4.1	98	70.500	ENSAOCG00000010915	rbm4.1	96	70.025	Amphiprion_ocellaris
ENSHCOG00000011403	rbm4.1	98	70.500	ENSAPEG00000009494	rbm4.1	96	70.025	Amphiprion_percula
ENSHCOG00000011403	rbm4.1	95	72.564	ENSATEG00000001904	rbm4.1	92	73.077	Anabas_testudineus
ENSHCOG00000011403	rbm4.1	99	70.660	ENSACLG00000007722	rbm4.1	96	71.253	Astatotilapia_calliptera
ENSHCOG00000011403	rbm4.1	80	48.276	ENSACLG00000007740	-	92	44.882	Astatotilapia_calliptera
ENSHCOG00000011403	rbm4.1	95	61.155	ENSAMXG00000036611	rbm4.1	91	62.304	Astyanax_mexicanus
ENSHCOG00000011403	rbm4.1	95	68.638	ENSCSEG00000014365	rbm4.1	93	68.123	Cynoglossus_semilaevis
ENSHCOG00000011403	rbm4.1	95	47.287	ENSCSEG00000014359	-	92	48.062	Cynoglossus_semilaevis
ENSHCOG00000011403	rbm4.1	95	67.692	ENSCVAG00000019349	rbm4.1	92	67.352	Cyprinodon_variegatus
ENSHCOG00000011403	rbm4.1	98	61.765	ENSDARG00000036386	rbm4.1	79	79.710	Danio_rerio
ENSHCOG00000011403	rbm4.1	98	57.072	ENSELUG00000013205	rbm4.1	95	57.320	Esox_lucius
ENSHCOG00000011403	rbm4.1	95	67.008	ENSFHEG00000022926	rbm4.1	92	65.897	Fundulus_heteroclitus
ENSHCOG00000011403	rbm4.1	95	48.177	ENSGMOG00000007455	-	92	48.187	Gadus_morhua
ENSHCOG00000011403	rbm4.1	95	61.111	ENSGMOG00000007464	rbm4.1	92	63.520	Gadus_morhua
ENSHCOG00000011403	rbm4.1	95	67.092	ENSGAFG00000019302	rbm4.1	92	66.240	Gambusia_affinis
ENSHCOG00000011403	rbm4.1	95	70.332	ENSGACG00000000822	rbm4.1	92	86.458	Gasterosteus_aculeatus
ENSHCOG00000011403	rbm4.1	94	47.200	ENSGACG00000000821	-	91	47.872	Gasterosteus_aculeatus
ENSHCOG00000011403	rbm4.1	99	70.660	ENSHBUG00000011610	rbm4.1	96	71.253	Haplochromis_burtoni
ENSHCOG00000011403	rbm4.1	95	49.869	ENSIPUG00000022937	rbm4.2	92	50.130	Ictalurus_punctatus
ENSHCOG00000011403	rbm4.1	95	61.654	ENSIPUG00000022931	rbm4.1	93	61.153	Ictalurus_punctatus
ENSHCOG00000011403	rbm4.1	98	67.488	ENSKMAG00000006556	rbm4.1	95	67.734	Kryptolebias_marmoratus
ENSHCOG00000011403	rbm4.1	92	46.438	ENSKMAG00000006528	-	73	52.025	Kryptolebias_marmoratus
ENSHCOG00000011403	rbm4.1	99	68.719	ENSLBEG00000019782	rbm4.1	96	68.966	Labrus_bergylta
ENSHCOG00000011403	rbm4.1	95	46.719	ENSLBEG00000019756	-	90	57.962	Labrus_bergylta
ENSHCOG00000011403	rbm4.1	98	71.322	ENSMAMG00000001765	rbm4.1	96	70.936	Mastacembelus_armatus
ENSHCOG00000011403	rbm4.1	99	45.926	ENSMAMG00000001760	-	96	45.926	Mastacembelus_armatus
ENSHCOG00000011403	rbm4.1	99	70.660	ENSMZEG00005009205	rbm4.1	96	71.253	Maylandia_zebra
ENSHCOG00000011403	rbm4.1	95	72.165	ENSMMOG00000020479	rbm4.1	92	73.196	Mola_mola
ENSHCOG00000011403	rbm4.1	98	68.966	ENSMALG00000020544	rbm4.1	96	69.704	Monopterus_albus
ENSHCOG00000011403	rbm4.1	99	47.236	ENSMALG00000020557	-	96	47.236	Monopterus_albus
ENSHCOG00000011403	rbm4.1	99	70.660	ENSNBRG00000017755	rbm4.1	96	71.253	Neolamprologus_brichardi
ENSHCOG00000011403	rbm4.1	99	70.660	ENSONIG00000015730	rbm4.1	96	71.253	Oreochromis_niloticus
ENSHCOG00000011403	rbm4.1	95	67.179	ENSORLG00000012496	rbm4.1	92	67.179	Oryzias_latipes
ENSHCOG00000011403	rbm4.1	95	67.179	ENSORLG00020012454	rbm4.1	92	67.179	Oryzias_latipes_hni
ENSHCOG00000011403	rbm4.1	95	67.179	ENSORLG00015013678	rbm4.1	92	67.179	Oryzias_latipes_hsok
ENSHCOG00000011403	rbm4.1	95	68.462	ENSOMEG00000001001	rbm4.1	92	68.462	Oryzias_melastigma
ENSHCOG00000011403	rbm4.1	99	55.037	ENSPKIG00000020805	rbm4.1	93	78.986	Paramormyrops_kingsleyae
ENSHCOG00000011403	rbm4.1	95	67.010	ENSPFOG00000012675	rbm4.1	92	66.150	Poecilia_formosa
ENSHCOG00000011403	rbm4.1	95	66.837	ENSPLAG00000018572	rbm4.1	92	65.985	Poecilia_latipinna
ENSHCOG00000011403	rbm4.1	95	66.837	ENSPMEG00000006290	rbm4.1	92	65.985	Poecilia_mexicana
ENSHCOG00000011403	rbm4.1	95	66.837	ENSPREG00000003724	rbm4.1	92	65.985	Poecilia_reticulata
ENSHCOG00000011403	rbm4.1	99	61.321	ENSPREG00000003764	-	95	43.970	Poecilia_reticulata
ENSHCOG00000011403	rbm4.1	99	70.660	ENSPNYG00000004662	rbm4.1	96	71.253	Pundamilia_nyererei
ENSHCOG00000011403	rbm4.1	95	63.896	ENSPNAG00000002539	rbm4.1	92	65.296	Pygocentrus_nattereri
ENSHCOG00000011403	rbm4.1	99	49.114	ENSPNAG00000013057	rbm4.2	92	50.000	Pygocentrus_nattereri
ENSHCOG00000011403	rbm4.1	95	58.312	ENSSFOG00015021996	sf1	93	58.056	Scleropages_formosus
ENSHCOG00000011403	rbm4.1	98	69.154	ENSSMAG00000007571	rbm4.1	96	68.159	Scophthalmus_maximus
ENSHCOG00000011403	rbm4.1	95	47.781	ENSSDUG00000003936	-	92	48.964	Seriola_dumerili
ENSHCOG00000011403	rbm4.1	98	72.139	ENSSDUG00000003925	rbm4.1	96	70.936	Seriola_dumerili
ENSHCOG00000011403	rbm4.1	98	72.139	ENSSLDG00000013147	rbm4.1	96	70.936	Seriola_lalandi_dorsalis
ENSHCOG00000011403	rbm4.1	80	50.784	ENSSLDG00000013157	-	92	48.964	Seriola_lalandi_dorsalis
ENSHCOG00000011403	rbm4.1	99	44.913	ENSSPAG00000019046	-	96	44.417	Stegastes_partitus
ENSHCOG00000011403	rbm4.1	98	70.075	ENSSPAG00000019053	rbm4.1	96	71.078	Stegastes_partitus
ENSHCOG00000011403	rbm4.1	95	68.974	ENSTRUG00000013334	rbm4.1	92	68.895	Takifugu_rubripes
ENSHCOG00000011403	rbm4.1	99	44.192	ENSTRUG00000013328	-	96	44.444	Takifugu_rubripes
ENSHCOG00000011403	rbm4.1	95	45.383	ENSTNIG00000000316	-	92	46.475	Tetraodon_nigroviridis
ENSHCOG00000011403	rbm4.1	95	85.294	ENSTNIG00000004821	rbm4.1	90	85.294	Tetraodon_nigroviridis
ENSHCOG00000011403	rbm4.1	83	65.363	ENSXETG00000026649	rbm4b	88	42.005	Xenopus_tropicalis
ENSHCOG00000011403	rbm4.1	95	66.837	ENSXCOG00000003731	rbm4.1	92	65.985	Xiphophorus_couchianus
ENSHCOG00000011403	rbm4.1	98	69.939	ENSXMAG00000008059	-	96	45.865	Xiphophorus_maculatus
ENSHCOG00000011403	rbm4.1	95	66.582	ENSXMAG00000008069	rbm4.1	92	65.729	Xiphophorus_maculatus