EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000011513 (Gene tree)
Gene ID: 109514947
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 8265 bases
Position: chrKV879888.1:3351578-3359842
Accession: 109514947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023190	PRP1_N	PF06424.12	1.4e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015164	-	3592	XM_019868415	ENSHCOP00000023190	969 (aa)	XP_019723974	UPI00094E957E

Gene Model

Click here to download ENSHCOG00000011513's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000011513's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000011513	prpf6	96	91.180	ENSG00000101161	PRPF6	100	90.755	Homo_sapiens
ENSHCOG00000011513	prpf6	100	96.491	ENSAPOG00000010395	prpf6	100	96.491	Acanthochromis_polyacanthus
ENSHCOG00000011513	prpf6	96	90.552	ENSAMEG00000001916	PRPF6	99	90.127	Ailuropoda_melanoleuca
ENSHCOG00000011513	prpf6	100	96.078	ENSACIG00000019862	prpf6	100	96.078	Amphilophus_citrinellus
ENSHCOG00000011513	prpf6	100	96.594	ENSAOCG00000012988	prpf6	100	96.594	Amphiprion_ocellaris
ENSHCOG00000011513	prpf6	96	91.398	ENSAPEG00000008301	prpf6	100	91.613	Amphiprion_percula
ENSHCOG00000011513	prpf6	100	96.594	ENSATEG00000005581	prpf6	100	96.594	Anabas_testudineus
ENSHCOG00000011513	prpf6	96	91.711	ENSACAG00000006464	PRPF6	95	91.286	Anolis_carolinensis
ENSHCOG00000011513	prpf6	96	91.392	ENSANAG00000012661	PRPF6	100	91.873	Aotus_nancymaae
ENSHCOG00000011513	prpf6	100	95.769	ENSACLG00000025875	prpf6	100	95.769	Astatotilapia_calliptera
ENSHCOG00000011513	prpf6	97	93.114	ENSAMXG00000001929	prpf6	100	91.393	Astyanax_mexicanus
ENSHCOG00000011513	prpf6	96	91.498	ENSBTAG00000011656	PRPF6	100	91.073	Bos_taurus
ENSHCOG00000011513	prpf6	96	91.392	ENSCJAG00000010616	PRPF6	100	90.967	Callithrix_jacchus
ENSHCOG00000011513	prpf6	96	91.605	ENSCAFG00000013165	PRPF6	100	91.180	Canis_familiaris
ENSHCOG00000011513	prpf6	96	91.605	ENSCAFG00020002050	PRPF6	100	91.180	Canis_lupus_dingo
ENSHCOG00000011513	prpf6	96	91.498	ENSCHIG00000018187	PRPF6	100	91.073	Capra_hircus
ENSHCOG00000011513	prpf6	96	91.605	ENSTSYG00000007814	PRPF6	100	91.180	Carlito_syrichta
ENSHCOG00000011513	prpf6	93	90.731	ENSCAPG00000015077	PRPF6	100	89.858	Cavia_aperea
ENSHCOG00000011513	prpf6	96	92.030	ENSCPOG00000007518	PRPF6	100	91.605	Cavia_porcellus
ENSHCOG00000011513	prpf6	96	88.310	ENSCCAG00000024564	PRPF6	100	87.885	Cebus_capucinus
ENSHCOG00000011513	prpf6	96	91.286	ENSCATG00000037473	PRPF6	100	90.861	Cercocebus_atys
ENSHCOG00000011513	prpf6	96	88.523	ENSCLAG00000003854	PRPF6	100	88.098	Chinchilla_lanigera
ENSHCOG00000011513	prpf6	96	86.484	ENSCSAG00000016742	PRPF6	100	86.061	Chlorocebus_sabaeus
ENSHCOG00000011513	prpf6	81	77.073	ENSCHOG00000003315	-	98	76.860	Choloepus_hoffmanni
ENSHCOG00000011513	prpf6	98	90.644	ENSCPBG00000013964	PRPF6	96	91.809	Chrysemys_picta_bellii
ENSHCOG00000011513	prpf6	96	72.410	ENSCING00000008817	-	99	71.987	Ciona_intestinalis
ENSHCOG00000011513	prpf6	96	91.073	ENSCANG00000038230	PRPF6	100	90.648	Colobus_angolensis_palliatus
ENSHCOG00000011513	prpf6	96	92.030	ENSCGRG00001022666	Prpf6	100	91.605	Cricetulus_griseus_chok1gshd
ENSHCOG00000011513	prpf6	96	91.183	ENSCSEG00000018561	prpf6	100	91.183	Cynoglossus_semilaevis
ENSHCOG00000011513	prpf6	100	95.666	ENSCVAG00000010550	prpf6	100	95.666	Cyprinodon_variegatus
ENSHCOG00000011513	prpf6	100	91.803	ENSDARG00000091367	prpf6	100	93.326	Danio_rerio
ENSHCOG00000011513	prpf6	96	91.286	ENSDNOG00000040544	PRPF6	100	90.967	Dasypus_novemcinctus
ENSHCOG00000011513	prpf6	87	91.472	ENSDORG00000005406	Prpf6	100	91.472	Dipodomys_ordii
ENSHCOG00000011513	prpf6	96	70.860	FBgn0036828	CG6841	99	70.968	Drosophila_melanogaster
ENSHCOG00000011513	prpf6	83	90.058	ENSETEG00000004447	PRPF6	85	90.058	Echinops_telfairi
ENSHCOG00000011513	prpf6	96	85.185	ENSEBUG00000008835	prpf6	100	84.762	Eptatretus_burgeri
ENSHCOG00000011513	prpf6	97	91.254	ENSEASG00005023115	PRPF6	100	91.286	Equus_asinus_asinus
ENSHCOG00000011513	prpf6	96	87.460	ENSECAG00000013983	PRPF6	100	87.035	Equus_caballus
ENSHCOG00000011513	prpf6	86	95.833	ENSEEUG00000000180	PRPF6	81	95.833	Erinaceus_europaeus
ENSHCOG00000011513	prpf6	97	93.849	ENSELUG00000001945	prpf6	94	93.936	Esox_lucius
ENSHCOG00000011513	prpf6	96	91.605	ENSFCAG00000001183	PRPF6	100	91.180	Felis_catus
ENSHCOG00000011513	prpf6	96	91.640	ENSFALG00000010326	-	98	91.323	Ficedula_albicollis
ENSHCOG00000011513	prpf6	99	83.608	ENSFALG00000006046	-	97	85.699	Ficedula_albicollis
ENSHCOG00000011513	prpf6	96	90.542	ENSFDAG00000006451	PRPF6	100	91.156	Fukomys_damarensis
ENSHCOG00000011513	prpf6	99	95.967	ENSFHEG00000000560	prpf6	99	95.967	Fundulus_heteroclitus
ENSHCOG00000011513	prpf6	97	93.107	ENSGMOG00000015622	prpf6	99	92.577	Gadus_morhua
ENSHCOG00000011513	prpf6	96	91.711	ENSGALG00000006001	PRPF6	100	91.392	Gallus_gallus
ENSHCOG00000011513	prpf6	100	90.815	ENSGAFG00000021109	prpf6	100	90.815	Gambusia_affinis
ENSHCOG00000011513	prpf6	97	95.657	ENSGACG00000002576	prpf6	100	95.657	Gasterosteus_aculeatus
ENSHCOG00000011513	prpf6	98	90.674	ENSGAGG00000008653	PRPF6	96	91.915	Gopherus_agassizii
ENSHCOG00000011513	prpf6	96	91.180	ENSGGOG00000016876	PRPF6	100	90.755	Gorilla_gorilla
ENSHCOG00000011513	prpf6	100	95.769	ENSHBUG00000004496	prpf6	100	95.769	Haplochromis_burtoni
ENSHCOG00000011513	prpf6	96	91.923	ENSHGLG00000009222	PRPF6	100	91.498	Heterocephalus_glaber_female
ENSHCOG00000011513	prpf6	93	91.821	ENSHGLG00100016600	PRPF6	100	91.385	Heterocephalus_glaber_male
ENSHCOG00000011513	prpf6	100	91.684	ENSIPUG00000004912	prpf6	99	91.581	Ictalurus_punctatus
ENSHCOG00000011513	prpf6	96	89.490	ENSSTOG00000002922	PRPF6	100	88.641	Ictidomys_tridecemlineatus
ENSHCOG00000011513	prpf6	96	92.030	ENSJJAG00000000836	Prpf6	100	91.605	Jaculus_jaculus
ENSHCOG00000011513	prpf6	97	97.021	ENSKMAG00000017800	prpf6	100	95.666	Kryptolebias_marmoratus
ENSHCOG00000011513	prpf6	100	95.872	ENSLBEG00000012582	prpf6	100	95.872	Labrus_bergylta
ENSHCOG00000011513	prpf6	96	93.085	ENSLOCG00000004827	prpf6	96	91.277	Lepisosteus_oculatus
ENSHCOG00000011513	prpf6	96	91.286	ENSLAFG00000005272	PRPF6	100	90.861	Loxodonta_africana
ENSHCOG00000011513	prpf6	96	91.073	ENSMFAG00000037542	PRPF6	100	90.648	Macaca_fascicularis
ENSHCOG00000011513	prpf6	96	85.032	ENSMMUG00000015558	PRPF6	98	92.374	Macaca_mulatta
ENSHCOG00000011513	prpf6	96	78.814	ENSMNEG00000045555	PRPF6	100	78.390	Macaca_nemestrina
ENSHCOG00000011513	prpf6	100	96.285	ENSMAMG00000010718	prpf6	100	96.285	Mastacembelus_armatus
ENSHCOG00000011513	prpf6	90	96.571	ENSMZEG00005026539	prpf6	100	96.571	Maylandia_zebra
ENSHCOG00000011513	prpf6	97	96.588	ENSMZEG00005015261	-	100	96.588	Maylandia_zebra
ENSHCOG00000011513	prpf6	93	91.821	ENSMGAG00000006634	PRPF6	100	91.494	Meleagris_gallopavo
ENSHCOG00000011513	prpf6	96	92.030	ENSMAUG00000013969	Prpf6	100	91.605	Mesocricetus_auratus
ENSHCOG00000011513	prpf6	84	90.633	ENSMICG00000017793	PRPF6	98	90.629	Microcebus_murinus
ENSHCOG00000011513	prpf6	96	91.923	ENSMOCG00000001701	Prpf6	100	91.498	Microtus_ochrogaster
ENSHCOG00000011513	prpf6	96	97.097	ENSMMOG00000020419	prpf6	100	97.097	Mola_mola
ENSHCOG00000011513	prpf6	93	92.602	ENSMODG00000017051	PRPF6	99	92.109	Monodelphis_domestica
ENSHCOG00000011513	prpf6	95	96.957	ENSMALG00000000089	prpf6	100	96.957	Monopterus_albus
ENSHCOG00000011513	prpf6	96	85.654	MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	Mus_caroli
ENSHCOG00000011513	prpf6	96	92.030	ENSMUSG00000002455	Prpf6	100	96.296	Mus_musculus
ENSHCOG00000011513	prpf6	96	92.030	MGP_PahariEiJ_G0026262	Prpf6	100	96.296	Mus_pahari
ENSHCOG00000011513	prpf6	96	92.030	MGP_SPRETEiJ_G0025741	Prpf6	100	96.296	Mus_spretus
ENSHCOG00000011513	prpf6	86	91.981	ENSMPUG00000008673	PRPF6	98	91.981	Mustela_putorius_furo
ENSHCOG00000011513	prpf6	96	92.136	ENSNGAG00000003365	Prpf6	100	91.711	Nannospalax_galili
ENSHCOG00000011513	prpf6	100	95.872	ENSNBRG00000015025	prpf6	100	95.872	Neolamprologus_brichardi
ENSHCOG00000011513	prpf6	96	91.073	ENSNLEG00000010208	PRPF6	100	90.648	Nomascus_leucogenys
ENSHCOG00000011513	prpf6	96	82.405	ENSMEUG00000009824	-	90	82.213	Notamacropus_eugenii
ENSHCOG00000011513	prpf6	96	86.079	ENSODEG00000004841	PRPF6	100	85.654	Octodon_degus
ENSHCOG00000011513	prpf6	100	95.975	ENSONIG00000017406	prpf6	100	95.975	Oreochromis_niloticus
ENSHCOG00000011513	prpf6	96	91.923	ENSOANG00000004920	PRPF6	100	91.498	Ornithorhynchus_anatinus
ENSHCOG00000011513	prpf6	95	89.807	ENSOCUG00000014151	PRPF6	100	89.378	Oryctolagus_cuniculus
ENSHCOG00000011513	prpf6	100	94.530	ENSORLG00000009592	prpf6	100	94.530	Oryzias_latipes
ENSHCOG00000011513	prpf6	100	94.634	ENSORLG00020001458	prpf6	100	94.634	Oryzias_latipes_hni
ENSHCOG00000011513	prpf6	100	94.634	ENSORLG00015018762	prpf6	100	94.634	Oryzias_latipes_hsok
ENSHCOG00000011513	prpf6	100	95.253	ENSOMEG00000012174	prpf6	100	95.253	Oryzias_melastigma
ENSHCOG00000011513	prpf6	96	84.713	ENSOGAG00000007573	PRPF6	100	84.289	Otolemur_garnettii
ENSHCOG00000011513	prpf6	96	91.073	ENSOARG00000008776	PRPF6	99	90.648	Ovis_aries
ENSHCOG00000011513	prpf6	96	91.180	ENSPPAG00000008686	PRPF6	100	90.755	Pan_paniscus
ENSHCOG00000011513	prpf6	96	91.605	ENSPPRG00000008497	PRPF6	100	91.180	Panthera_pardus
ENSHCOG00000011513	prpf6	93	91.494	ENSPTIG00000011184	PRPF6	97	91.058	Panthera_tigris_altaica
ENSHCOG00000011513	prpf6	96	91.180	ENSPTRG00000013765	PRPF6	100	90.755	Pan_troglodytes
ENSHCOG00000011513	prpf6	96	90.967	ENSPANG00000024135	PRPF6	100	90.542	Papio_anubis
ENSHCOG00000011513	prpf6	98	92.716	ENSPKIG00000005627	prpf6	99	93.723	Paramormyrops_kingsleyae
ENSHCOG00000011513	prpf6	90	91.723	ENSPSIG00000007717	PRPF6	100	91.270	Pelodiscus_sinensis
ENSHCOG00000011513	prpf6	99	94.215	ENSPMGG00000008925	prpf6	99	93.492	Periophthalmus_magnuspinnatus
ENSHCOG00000011513	prpf6	96	92.030	ENSPEMG00000016036	Prpf6	100	91.605	Peromyscus_maniculatus_bairdii
ENSHCOG00000011513	prpf6	98	85.908	ENSPMAG00000006144	prpf6	99	87.220	Petromyzon_marinus
ENSHCOG00000011513	prpf6	96	92.030	ENSPCIG00000017909	PRPF6	100	91.605	Phascolarctos_cinereus
ENSHCOG00000011513	prpf6	100	94.683	ENSPFOG00000006431	prpf6	99	94.683	Poecilia_formosa
ENSHCOG00000011513	prpf6	100	95.459	ENSPLAG00000005974	prpf6	100	95.459	Poecilia_latipinna
ENSHCOG00000011513	prpf6	100	95.666	ENSPMEG00000009977	prpf6	100	95.666	Poecilia_mexicana
ENSHCOG00000011513	prpf6	100	95.253	ENSPREG00000017993	prpf6	95	95.253	Poecilia_reticulata
ENSHCOG00000011513	prpf6	96	90.648	ENSPPYG00000011256	PRPF6	100	90.223	Pongo_abelii
ENSHCOG00000011513	prpf6	91	93.954	ENSPCAG00000006536	PRPF6	88	93.301	Procavia_capensis
ENSHCOG00000011513	prpf6	96	91.286	ENSPCOG00000016881	PRPF6	100	90.861	Propithecus_coquereli
ENSHCOG00000011513	prpf6	96	85.760	ENSPVAG00000014316	PRPF6	100	85.335	Pteropus_vampyrus
ENSHCOG00000011513	prpf6	100	82.136	ENSPNYG00000001939	prpf6	100	82.136	Pundamilia_nyererei
ENSHCOG00000011513	prpf6	97	93.856	ENSPNAG00000015606	prpf6	100	91.906	Pygocentrus_nattereri
ENSHCOG00000011513	prpf6	96	91.923	ENSRNOG00000051498	Prpf6	100	91.498	Rattus_norvegicus
ENSHCOG00000011513	prpf6	96	91.073	ENSRBIG00000043613	PRPF6	100	90.648	Rhinopithecus_bieti
ENSHCOG00000011513	prpf6	96	88.042	ENSRROG00000040969	PRPF6	98	91.003	Rhinopithecus_roxellana
ENSHCOG00000011513	prpf6	87	88.496	ENSSBOG00000020632	PRPF6	93	86.332	Saimiri_boliviensis_boliviensis
ENSHCOG00000011513	prpf6	96	92.030	ENSSHAG00000016810	PRPF6	100	91.605	Sarcophilus_harrisii
ENSHCOG00000011513	prpf6	95	93.978	ENSSFOG00015020859	prpf6	100	93.548	Scleropages_formosus
ENSHCOG00000011513	prpf6	100	95.356	ENSSMAG00000008112	prpf6	100	95.356	Scophthalmus_maximus
ENSHCOG00000011513	prpf6	100	96.388	ENSSDUG00000016142	prpf6	100	96.388	Seriola_dumerili
ENSHCOG00000011513	prpf6	100	96.388	ENSSLDG00000025283	prpf6	99	96.388	Seriola_lalandi_dorsalis
ENSHCOG00000011513	prpf6	90	90.125	ENSSPUG00000018260	PRPF6	100	89.671	Sphenodon_punctatus
ENSHCOG00000011513	prpf6	100	96.594	ENSSPAG00000015850	prpf6	100	96.594	Stegastes_partitus
ENSHCOG00000011513	prpf6	97	90.157	ENSSSCG00000029119	PRPF6	98	90.878	Sus_scrofa
ENSHCOG00000011513	prpf6	96	91.737	ENSTGUG00000007221	PRPF6	100	91.419	Taeniopygia_guttata
ENSHCOG00000011513	prpf6	100	95.356	ENSTRUG00000002920	prpf6	100	95.356	Takifugu_rubripes
ENSHCOG00000011513	prpf6	96	89.798	ENSTNIG00000017873	prpf6	100	89.798	Tetraodon_nigroviridis
ENSHCOG00000011513	prpf6	85	96.067	ENSTBEG00000005348	PRPF6	85	93.820	Tupaia_belangeri
ENSHCOG00000011513	prpf6	96	91.286	ENSTTRG00000013068	PRPF6	100	90.861	Tursiops_truncatus
ENSHCOG00000011513	prpf6	98	86.536	ENSUMAG00000021631	PRPF6	98	89.640	Ursus_maritimus
ENSHCOG00000011513	prpf6	96	91.605	ENSVVUG00000014948	PRPF6	100	91.180	Vulpes_vulpes
ENSHCOG00000011513	prpf6	98	90.239	ENSXETG00000012054	prpf6	97	91.383	Xenopus_tropicalis
ENSHCOG00000011513	prpf6	100	95.562	ENSXCOG00000008082	prpf6	100	95.562	Xiphophorus_couchianus
ENSHCOG00000011513	prpf6	100	95.562	ENSXMAG00000015581	prpf6	100	95.562	Xiphophorus_maculatus