EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000011874 (Gene tree)
Gene ID: 109508358
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 12308 bases
Position: chrKV880522.1:887055-899362
Accession: 109508358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023392	RNA_pol_Rpb1_5	PF04998.17	3.1e-101	1	1
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	1	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	2	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	3	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	4	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	5	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	6	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	7	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	8	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	9	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	10	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	11	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	12	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	13	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	14	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	15	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	16	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	17	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	18	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	19	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	20	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	21	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	22	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	23	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	24	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	25	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	26	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	27	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	28	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	29	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	30	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	31	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	32	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	33	34
ENSHCOP00000023392	RNA_pol_Rpb1_R	PF05001.13	5.8e-24	34	34
ENSHCOP00000023392	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSHCOP00000023392	RNA_pol_Rpb1_2	PF00623.20	2.1e-74	1	1
ENSHCOP00000023392	RNA_pol_Rpb1_3	PF04983.18	1.4e-50	1	1
ENSHCOP00000023392	RNA_pol_Rpb1_1	PF04997.12	2.6e-108	1	1
ENSHCOP00000023392	RNA_pol_Rpb1_7	PF04990.12	2.4e-55	1	1
ENSHCOP00000023392	RNA_pol_Rpb1_6	PF04992.14	8e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015616	-	7720	XM_019858272	ENSHCOP00000023392	1966 (aa)	XP_019713831	UPI00094F0DF3

Gene Model

Click here to download ENSHCOG00000011874's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000011874's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000011874	polr2a	67	38.261	ENSHCOG00000001075	polr3a	91	38.261
ENSHCOG00000011874	polr2a	56	32.470	ENSHCOG00000003345	polr1a	71	32.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000011874	polr2a	82	97.829	ENSAPOG00000006552	polr2a	89	97.829	Acanthochromis_polyacanthus
ENSHCOG00000011874	polr2a	82	93.680	ENSAMEG00000016265	-	82	93.688	Ailuropoda_melanoleuca
ENSHCOG00000011874	polr2a	100	95.727	ENSACIG00000015982	polr2a	100	96.236	Amphilophus_citrinellus
ENSHCOG00000011874	polr2a	95	95.720	ENSAOCG00000004255	polr2a	93	95.720	Amphiprion_ocellaris
ENSHCOG00000011874	polr2a	100	98.271	ENSAPEG00000012623	polr2a	100	98.271	Amphiprion_percula
ENSHCOG00000011874	polr2a	100	97.711	ENSATEG00000019644	polr2a	100	97.711	Anabas_testudineus
ENSHCOG00000011874	polr2a	82	94.472	ENSACAG00000014561	POLR2A	82	94.479	Anolis_carolinensis
ENSHCOG00000011874	polr2a	82	93.917	ENSANAG00000020093	-	82	93.924	Aotus_nancymaae
ENSHCOG00000011874	polr2a	100	97.762	ENSACLG00000006735	polr2a	100	97.762	Astatotilapia_calliptera
ENSHCOG00000011874	polr2a	100	97.304	ENSAMXG00000020046	polr2a	100	97.304	Astyanax_mexicanus
ENSHCOG00000011874	polr2a	82	93.917	ENSBTAG00000046765	POLR2A	82	93.924	Bos_taurus
ENSHCOG00000011874	polr2a	98	70.238	WBGene00000123	ama-1	99	78.641	Caenorhabditis_elegans
ENSHCOG00000011874	polr2a	86	93.979	ENSCAFG00000016532	POLR2A	99	93.986	Canis_familiaris
ENSHCOG00000011874	polr2a	82	93.114	ENSCAFG00020007929	-	82	93.123	Canis_lupus_dingo
ENSHCOG00000011874	polr2a	82	93.917	ENSCHIG00000027173	-	82	93.924	Capra_hircus
ENSHCOG00000011874	polr2a	90	93.217	ENSTSYG00000012803	-	85	91.213	Carlito_syrichta
ENSHCOG00000011874	polr2a	98	90.606	ENSCAPG00000001882	-	100	93.110	Cavia_aperea
ENSHCOG00000011874	polr2a	99	88.634	ENSCPOG00000014812	-	100	92.870	Cavia_porcellus
ENSHCOG00000011874	polr2a	82	93.917	ENSCCAG00000020938	-	82	93.924	Cebus_capucinus
ENSHCOG00000011874	polr2a	82	93.917	ENSCATG00000013680	-	82	93.924	Cercocebus_atys
ENSHCOG00000011874	polr2a	82	93.793	ENSCLAG00000012196	-	82	93.800	Chinchilla_lanigera
ENSHCOG00000011874	polr2a	82	85.071	ENSCSAG00000011644	-	82	85.089	Chlorocebus_sabaeus
ENSHCOG00000011874	polr2a	91	83.973	ENSCPBG00000012697	POLR2A	94	90.453	Chrysemys_picta_bellii
ENSHCOG00000011874	polr2a	98	76.853	ENSCING00000007884	-	99	77.413	Ciona_intestinalis
ENSHCOG00000011874	polr2a	98	79.630	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSHCOG00000011874	polr2a	82	93.234	ENSCANG00000010622	-	82	93.242	Colobus_angolensis_palliatus
ENSHCOG00000011874	polr2a	82	87.585	ENSCGRG00001003538	Polr2a	85	86.333	Cricetulus_griseus_chok1gshd
ENSHCOG00000011874	polr2a	82	90.184	ENSCGRG00000012105	Polr2a	93	90.196	Cricetulus_griseus_crigri
ENSHCOG00000011874	polr2a	99	96.896	ENSCSEG00000002635	polr2a	100	96.896	Cynoglossus_semilaevis
ENSHCOG00000011874	polr2a	100	97.915	ENSCVAG00000005156	polr2a	100	97.915	Cyprinodon_variegatus
ENSHCOG00000011874	polr2a	100	97.102	ENSDARG00000099966	polr2a	100	97.102	Danio_rerio
ENSHCOG00000011874	polr2a	82	91.124	ENSDNOG00000016482	-	82	91.135	Dasypus_novemcinctus
ENSHCOG00000011874	polr2a	82	93.917	ENSDORG00000008667	Polr2a	82	93.924	Dipodomys_ordii
ENSHCOG00000011874	polr2a	99	69.937	FBgn0003277	RpII215	97	75.031	Drosophila_melanogaster
ENSHCOG00000011874	polr2a	94	89.837	ENSETEG00000002540	-	87	90.925	Echinops_telfairi
ENSHCOG00000011874	polr2a	82	86.775	ENSEBUG00000013967	polr2a	82	86.762	Eptatretus_burgeri
ENSHCOG00000011874	polr2a	82	91.868	ENSEASG00005019114	-	83	91.878	Equus_asinus_asinus
ENSHCOG00000011874	polr2a	82	93.917	ENSECAG00000018485	POLR2A	82	93.924	Equus_caballus
ENSHCOG00000011874	polr2a	83	93.792	ENSEEUG00000001154	-	95	93.792	Erinaceus_europaeus
ENSHCOG00000011874	polr2a	89	93.033	ENSELUG00000014284	polr2a	84	93.095	Esox_lucius
ENSHCOG00000011874	polr2a	82	93.979	ENSFDAG00000008287	-	82	93.986	Fukomys_damarensis
ENSHCOG00000011874	polr2a	99	97.599	ENSFHEG00000001768	polr2a	100	97.599	Fundulus_heteroclitus
ENSHCOG00000011874	polr2a	99	92.590	ENSGMOG00000007725	polr2a	100	92.615	Gadus_morhua
ENSHCOG00000011874	polr2a	99	98.551	ENSGAFG00000005389	polr2a	100	93.119	Gambusia_affinis
ENSHCOG00000011874	polr2a	99	93.833	ENSGACG00000019366	polr2a	100	93.609	Gasterosteus_aculeatus
ENSHCOG00000011874	polr2a	82	91.827	ENSGGOG00000014800	-	96	92.284	Gorilla_gorilla
ENSHCOG00000011874	polr2a	99	97.744	ENSHBUG00000018937	polr2a	100	97.744	Haplochromis_burtoni
ENSHCOG00000011874	polr2a	82	93.979	ENSHGLG00000012381	POLR2A	82	93.986	Heterocephalus_glaber_female
ENSHCOG00000011874	polr2a	82	93.979	ENSHGLG00100014843	POLR2A	82	93.986	Heterocephalus_glaber_male
ENSHCOG00000011874	polr2a	100	96.999	ENSIPUG00000002613	Polr2a	100	96.999	Ictalurus_punctatus
ENSHCOG00000011874	polr2a	82	93.917	ENSSTOG00000001304	-	82	93.924	Ictidomys_tridecemlineatus
ENSHCOG00000011874	polr2a	82	94.041	ENSJJAG00000013049	Polr2a	82	94.048	Jaculus_jaculus
ENSHCOG00000011874	polr2a	82	96.154	ENSKMAG00000016343	polr2a	86	96.154	Kryptolebias_marmoratus
ENSHCOG00000011874	polr2a	99	98.015	ENSLBEG00000027652	polr2a	100	98.015	Labrus_bergylta
ENSHCOG00000011874	polr2a	80	85.009	ENSLACG00000012071	POLR2A	81	85.082	Latimeria_chalumnae
ENSHCOG00000011874	polr2a	89	96.723	ENSLOCG00000013863	polr2a	97	96.276	Lepisosteus_oculatus
ENSHCOG00000011874	polr2a	99	90.740	ENSLAFG00000008626	-	97	93.924	Loxodonta_africana
ENSHCOG00000011874	polr2a	50	92.543	ENSMFAG00000007042	-	99	92.543	Macaca_fascicularis
ENSHCOG00000011874	polr2a	82	93.917	ENSMMUG00000023620	-	91	93.924	Macaca_mulatta
ENSHCOG00000011874	polr2a	82	93.482	ENSMNEG00000040407	-	82	93.490	Macaca_nemestrina
ENSHCOG00000011874	polr2a	80	89.494	ENSMLEG00000030263	-	99	92.543	Mandrillus_leucophaeus
ENSHCOG00000011874	polr2a	100	97.762	ENSMAMG00000003351	polr2a	100	97.762	Mastacembelus_armatus
ENSHCOG00000011874	polr2a	100	97.762	ENSMZEG00005021429	polr2a	100	97.762	Maylandia_zebra
ENSHCOG00000011874	polr2a	50	93.578	ENSMAUG00000021055	-	99	93.578	Mesocricetus_auratus
ENSHCOG00000011874	polr2a	82	93.855	ENSMICG00000013372	-	98	92.938	Microcebus_murinus
ENSHCOG00000011874	polr2a	99	89.405	ENSMOCG00000018279	Polr2a	100	89.617	Microtus_ochrogaster
ENSHCOG00000011874	polr2a	90	97.022	ENSMMOG00000012515	polr2a	92	97.022	Mola_mola
ENSHCOG00000011874	polr2a	82	93.855	ENSMODG00000007009	-	82	93.862	Monodelphis_domestica
ENSHCOG00000011874	polr2a	94	94.548	ENSMALG00000008716	polr2a	99	95.161	Monopterus_albus
ENSHCOG00000011874	polr2a	82	93.917	MGP_CAROLIEiJ_G0016587	Polr2a	82	93.924	Mus_caroli
ENSHCOG00000011874	polr2a	82	93.917	ENSMUSG00000005198	Polr2a	82	93.924	Mus_musculus
ENSHCOG00000011874	polr2a	82	91.842	MGP_PahariEiJ_G0017718	Polr2a	82	91.852	Mus_pahari
ENSHCOG00000011874	polr2a	82	93.917	MGP_SPRETEiJ_G0017423	Polr2a	82	93.924	Mus_spretus
ENSHCOG00000011874	polr2a	82	93.917	ENSMPUG00000009648	-	82	93.924	Mustela_putorius_furo
ENSHCOG00000011874	polr2a	82	93.304	ENSMLUG00000009088	-	82	93.313	Myotis_lucifugus
ENSHCOG00000011874	polr2a	82	93.917	ENSNGAG00000002543	Polr2a	82	93.924	Nannospalax_galili
ENSHCOG00000011874	polr2a	100	95.677	ENSNBRG00000002005	polr2a	100	96.134	Neolamprologus_brichardi
ENSHCOG00000011874	polr2a	82	92.446	ENSNLEG00000009460	-	82	92.455	Nomascus_leucogenys
ENSHCOG00000011874	polr2a	94	94.989	ENSMEUG00000008611	-	96	86.450	Notamacropus_eugenii
ENSHCOG00000011874	polr2a	80	93.746	ENSOPRG00000015116	-	99	93.746	Ochotona_princeps
ENSHCOG00000011874	polr2a	87	93.788	ENSODEG00000017674	-	85	89.060	Octodon_degus
ENSHCOG00000011874	polr2a	100	98.016	ENSONIG00000009231	polr2a	100	98.016	Oreochromis_niloticus
ENSHCOG00000011874	polr2a	99	89.885	ENSOCUG00000017929	-	100	93.800	Oryctolagus_cuniculus
ENSHCOG00000011874	polr2a	100	97.915	ENSORLG00000006431	polr2a	100	97.915	Oryzias_latipes
ENSHCOG00000011874	polr2a	100	97.915	ENSORLG00020010235	polr2a	100	97.915	Oryzias_latipes_hni
ENSHCOG00000011874	polr2a	100	97.813	ENSORLG00015007075	polr2a	100	97.813	Oryzias_latipes_hsok
ENSHCOG00000011874	polr2a	95	97.849	ENSOMEG00000010713	polr2a	100	97.573	Oryzias_melastigma
ENSHCOG00000011874	polr2a	82	93.917	ENSOGAG00000033608	-	82	93.924	Otolemur_garnettii
ENSHCOG00000011874	polr2a	91	93.917	ENSOARG00000013874	-	100	93.924	Ovis_aries
ENSHCOG00000011874	polr2a	81	91.630	ENSPPAG00000043734	-	82	91.321	Pan_paniscus
ENSHCOG00000011874	polr2a	82	92.446	ENSPTRG00000008691	POLR2A	82	92.455	Pan_troglodytes
ENSHCOG00000011874	polr2a	82	93.234	ENSPANG00000024099	-	82	93.242	Papio_anubis
ENSHCOG00000011874	polr2a	77	95.471	ENSPKIG00000005727	polr2a	85	80.702	Paramormyrops_kingsleyae
ENSHCOG00000011874	polr2a	98	92.406	ENSPSIG00000014006	POLR2A	100	92.317	Pelodiscus_sinensis
ENSHCOG00000011874	polr2a	100	96.715	ENSPMGG00000019734	polr2a	100	96.715	Periophthalmus_magnuspinnatus
ENSHCOG00000011874	polr2a	82	93.917	ENSPEMG00000012521	Polr2a	82	93.924	Peromyscus_maniculatus_bairdii
ENSHCOG00000011874	polr2a	86	93.859	ENSPCIG00000028851	-	82	93.859	Phascolarctos_cinereus
ENSHCOG00000011874	polr2a	99	97.942	ENSPFOG00000007890	polr2a	99	97.942	Poecilia_formosa
ENSHCOG00000011874	polr2a	99	97.942	ENSPLAG00000007399	polr2a	99	97.942	Poecilia_latipinna
ENSHCOG00000011874	polr2a	99	97.942	ENSPMEG00000002071	polr2a	99	97.942	Poecilia_mexicana
ENSHCOG00000011874	polr2a	100	97.915	ENSPREG00000013122	polr2a	100	97.915	Poecilia_reticulata
ENSHCOG00000011874	polr2a	82	93.917	ENSPPYG00000007924	-	82	93.924	Pongo_abelii
ENSHCOG00000011874	polr2a	74	94.474	ENSPCAG00000006951	-	74	94.474	Procavia_capensis
ENSHCOG00000011874	polr2a	82	92.620	ENSPCOG00000025260	-	82	92.629	Propithecus_coquereli
ENSHCOG00000011874	polr2a	82	93.606	ENSPVAG00000005069	-	82	93.614	Pteropus_vampyrus
ENSHCOG00000011874	polr2a	100	97.813	ENSPNYG00000022340	polr2a	100	97.813	Pundamilia_nyererei
ENSHCOG00000011874	polr2a	100	97.457	ENSPNAG00000011237	polr2a	100	97.457	Pygocentrus_nattereri
ENSHCOG00000011874	polr2a	82	93.979	ENSRNOG00000028834	Polr2a	82	93.986	Rattus_norvegicus
ENSHCOG00000011874	polr2a	82	93.544	ENSRBIG00000002471	-	91	93.552	Rhinopithecus_bieti
ENSHCOG00000011874	polr2a	82	93.917	ENSRROG00000029583	-	92	93.056	Rhinopithecus_roxellana
ENSHCOG00000011874	polr2a	82	49.695	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSHCOG00000011874	polr2a	82	93.917	ENSSBOG00000000808	-	82	93.924	Saimiri_boliviensis_boliviensis
ENSHCOG00000011874	polr2a	93	93.855	ENSSHAG00000002858	-	84	93.862	Sarcophilus_harrisii
ENSHCOG00000011874	polr2a	99	97.053	ENSSFOG00015023275	polr2a	100	97.053	Scleropages_formosus
ENSHCOG00000011874	polr2a	82	97.208	ENSSMAG00000009137	polr2a	82	97.208	Scophthalmus_maximus
ENSHCOG00000011874	polr2a	100	98.118	ENSSDUG00000020466	polr2a	100	98.118	Seriola_dumerili
ENSHCOG00000011874	polr2a	100	98.067	ENSSLDG00000020613	polr2a	100	98.067	Seriola_lalandi_dorsalis
ENSHCOG00000011874	polr2a	95	89.653	ENSSARG00000005875	-	99	90.458	Sorex_araneus
ENSHCOG00000011874	polr2a	100	99.429	ENSSPAG00000016741	polr2a	95	99.429	Stegastes_partitus
ENSHCOG00000011874	polr2a	82	92.986	ENSSSCG00000028278	-	82	92.994	Sus_scrofa
ENSHCOG00000011874	polr2a	98	91.816	ENSTRUG00000012320	polr2a	81	91.816	Takifugu_rubripes
ENSHCOG00000011874	polr2a	95	95.968	ENSTNIG00000010136	polr2a	100	95.968	Tetraodon_nigroviridis
ENSHCOG00000011874	polr2a	74	93.878	ENSTBEG00000013294	-	58	93.878	Tupaia_belangeri
ENSHCOG00000011874	polr2a	82	92.241	ENSTTRG00000014273	-	82	92.250	Tursiops_truncatus
ENSHCOG00000011874	polr2a	92	93.622	ENSUAMG00000014866	-	100	91.095	Ursus_americanus
ENSHCOG00000011874	polr2a	74	91.446	ENSUMAG00000015732	-	83	89.385	Ursus_maritimus
ENSHCOG00000011874	polr2a	65	97.826	ENSVPAG00000008842	-	76	97.826	Vicugna_pacos
ENSHCOG00000011874	polr2a	82	93.979	ENSVVUG00000027878	-	83	93.986	Vulpes_vulpes
ENSHCOG00000011874	polr2a	81	93.958	ENSXETG00000012465	polr2a	82	93.966	Xenopus_tropicalis
ENSHCOG00000011874	polr2a	90	95.285	ENSXCOG00000001804	polr2a	95	95.285	Xiphophorus_couchianus
ENSHCOG00000011874	polr2a	100	97.965	ENSXMAG00000015687	polr2a	100	97.965	Xiphophorus_maculatus