EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000011994 (Gene tree)
Gene ID: 109516769
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 19031 bases
Position: chrKV879959.1:728498-747528
Accession: 109516769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000009510	XRN_N	PF03159.18	7.8e-102	1	1
ENSHCOP00000009480	XRN_N	PF03159.18	1.7e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015614	-	2670	-	ENSHCOP00000009480	889 (aa)	-	-
ENSHCOT00000015643	-	3320	XM_019871548	ENSHCOP00000009510	978 (aa)	XP_019727107	UPI00094ED31B

Gene Model

Click here to download ENSHCOG00000011994's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000011994's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000011994	xrn2	99	68.927	ENSG00000088930	XRN2	99	68.016	Homo_sapiens
ENSHCOG00000011994	xrn2	96	84.878	ENSAPOG00000009818	xrn2	99	83.215	Acanthochromis_polyacanthus
ENSHCOG00000011994	xrn2	99	69.192	ENSAMEG00000012581	XRN2	99	68.283	Ailuropoda_melanoleuca
ENSHCOG00000011994	xrn2	95	76.629	ENSACIG00000015047	xrn2	95	85.851	Amphilophus_citrinellus
ENSHCOG00000011994	xrn2	96	84.681	ENSAOCG00000023632	xrn2	99	83.232	Amphiprion_ocellaris
ENSHCOG00000011994	xrn2	96	85.000	ENSAPEG00000014871	xrn2	99	83.333	Amphiprion_percula
ENSHCOG00000011994	xrn2	96	84.093	ENSATEG00000001273	xrn2	99	83.040	Anabas_testudineus
ENSHCOG00000011994	xrn2	95	69.403	ENSAPLG00000013869	XRN2	99	67.391	Anas_platyrhynchos
ENSHCOG00000011994	xrn2	99	68.490	ENSACAG00000005565	XRN2	90	73.769	Anolis_carolinensis
ENSHCOG00000011994	xrn2	99	68.725	ENSANAG00000020126	XRN2	99	67.814	Aotus_nancymaae
ENSHCOG00000011994	xrn2	96	80.432	ENSACLG00000010522	xrn2	98	84.083	Astatotilapia_calliptera
ENSHCOG00000011994	xrn2	99	76.884	ENSAMXG00000018301	xrn2	99	76.004	Astyanax_mexicanus
ENSHCOG00000011994	xrn2	99	68.655	ENSBTAG00000011304	XRN2	99	67.745	Bos_taurus
ENSHCOG00000011994	xrn2	90	52.914	WBGene00006964	xrn-2	92	52.360	Caenorhabditis_elegans
ENSHCOG00000011994	xrn2	99	68.826	ENSCJAG00000005611	XRN2	99	67.915	Callithrix_jacchus
ENSHCOG00000011994	xrn2	99	69.130	ENSCAFG00000005185	XRN2	99	68.219	Canis_familiaris
ENSHCOG00000011994	xrn2	99	69.130	ENSCAFG00020027479	XRN2	99	68.219	Canis_lupus_dingo
ENSHCOG00000011994	xrn2	99	68.554	ENSCHIG00000006921	XRN2	99	67.644	Capra_hircus
ENSHCOG00000011994	xrn2	99	69.028	ENSTSYG00000008315	XRN2	99	68.288	Carlito_syrichta
ENSHCOG00000011994	xrn2	97	58.342	ENSCAPG00000010773	XRN2	99	57.598	Cavia_aperea
ENSHCOG00000011994	xrn2	99	69.332	ENSCPOG00000009407	XRN2	99	68.421	Cavia_porcellus
ENSHCOG00000011994	xrn2	99	68.826	ENSCATG00000040350	XRN2	99	67.915	Cercocebus_atys
ENSHCOG00000011994	xrn2	99	69.433	ENSCLAG00000013419	XRN2	99	68.522	Chinchilla_lanigera
ENSHCOG00000011994	xrn2	99	68.826	ENSCSAG00000011094	XRN2	99	67.915	Chlorocebus_sabaeus
ENSHCOG00000011994	xrn2	59	88.172	ENSCHOG00000013404	XRN2	63	88.172	Choloepus_hoffmanni
ENSHCOG00000011994	xrn2	94	73.202	ENSCPBG00000023533	XRN2	99	68.008	Chrysemys_picta_bellii
ENSHCOG00000011994	xrn2	90	58.373	ENSCING00000022336	-	100	60.190	Ciona_intestinalis
ENSHCOG00000011994	xrn2	95	56.887	ENSCSAVG00000011217	-	97	70.233	Ciona_savignyi
ENSHCOG00000011994	xrn2	99	68.826	ENSCANG00000040240	XRN2	99	67.915	Colobus_angolensis_palliatus
ENSHCOG00000011994	xrn2	92	74.911	ENSCGRG00001010676	Xrn2	97	71.568	Cricetulus_griseus_chok1gshd
ENSHCOG00000011994	xrn2	97	68.054	ENSCGRG00000006378	Xrn2	99	67.638	Cricetulus_griseus_crigri
ENSHCOG00000011994	xrn2	53	78.185	ENSCSEG00000005628	xrn2	100	79.730	Cynoglossus_semilaevis
ENSHCOG00000011994	xrn2	94	79.909	ENSCVAG00000018999	xrn2	98	90.840	Cyprinodon_variegatus
ENSHCOG00000011994	xrn2	99	76.547	ENSDARG00000101900	xrn2	96	86.450	Danio_rerio
ENSHCOG00000011994	xrn2	99	68.522	ENSDNOG00000001895	XRN2	99	67.611	Dasypus_novemcinctus
ENSHCOG00000011994	xrn2	99	67.713	ENSDORG00000005434	Xrn2	99	66.700	Dipodomys_ordii
ENSHCOG00000011994	xrn2	91	54.061	FBgn0031868	Rat1	92	54.378	Drosophila_melanogaster
ENSHCOG00000011994	xrn2	91	80.049	ENSETEG00000001740	XRN2	92	80.049	Echinops_telfairi
ENSHCOG00000011994	xrn2	88	66.667	ENSEBUG00000016136	xrn2	100	69.137	Eptatretus_burgeri
ENSHCOG00000011994	xrn2	99	69.433	ENSEASG00005002484	XRN2	99	68.522	Equus_asinus_asinus
ENSHCOG00000011994	xrn2	94	92.308	ENSECAG00000018988	XRN2	96	92.308	Equus_caballus
ENSHCOG00000011994	xrn2	69	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSHCOG00000011994	xrn2	99	78.916	ENSELUG00000000552	xrn2	99	78.894	Esox_lucius
ENSHCOG00000011994	xrn2	99	68.826	ENSFCAG00000007970	XRN2	99	67.915	Felis_catus
ENSHCOG00000011994	xrn2	94	73.519	ENSFALG00000004508	XRN2	99	67.807	Ficedula_albicollis
ENSHCOG00000011994	xrn2	99	69.130	ENSFDAG00000016311	XRN2	99	68.219	Fukomys_damarensis
ENSHCOG00000011994	xrn2	53	80.688	ENSFHEG00000013039	xrn2	98	80.497	Fundulus_heteroclitus
ENSHCOG00000011994	xrn2	90	77.954	ENSGMOG00000013436	xrn2	100	80.579	Gadus_morhua
ENSHCOG00000011994	xrn2	99	68.629	ENSGALG00000008372	XRN2	89	74.306	Gallus_gallus
ENSHCOG00000011994	xrn2	94	81.537	ENSGAFG00000014284	xrn2	99	84.943	Gambusia_affinis
ENSHCOG00000011994	xrn2	91	80.676	ENSGACG00000011870	xrn2	96	88.417	Gasterosteus_aculeatus
ENSHCOG00000011994	xrn2	94	73.086	ENSGAGG00000004884	XRN2	99	68.012	Gopherus_agassizii
ENSHCOG00000011994	xrn2	99	68.826	ENSGGOG00000013738	XRN2	99	67.915	Gorilla_gorilla
ENSHCOG00000011994	xrn2	53	85.769	ENSHBUG00000005077	xrn2	94	85.577	Haplochromis_burtoni
ENSHCOG00000011994	xrn2	99	68.421	ENSHGLG00000014831	XRN2	99	67.510	Heterocephalus_glaber_female
ENSHCOG00000011994	xrn2	99	68.421	ENSHGLG00100013130	XRN2	99	67.510	Heterocephalus_glaber_male
ENSHCOG00000011994	xrn2	99	76.600	ENSIPUG00000006639	xrn2	99	76.100	Ictalurus_punctatus
ENSHCOG00000011994	xrn2	99	69.130	ENSSTOG00000000589	XRN2	99	68.219	Ictidomys_tridecemlineatus
ENSHCOG00000011994	xrn2	99	69.636	ENSJJAG00000022128	Xrn2	99	68.896	Jaculus_jaculus
ENSHCOG00000011994	xrn2	53	86.293	ENSLBEG00000010041	xrn2	100	86.100	Labrus_bergylta
ENSHCOG00000011994	xrn2	91	72.249	ENSLACG00000008307	XRN2	98	74.969	Latimeria_chalumnae
ENSHCOG00000011994	xrn2	99	72.256	ENSLOCG00000016874	xrn2	93	80.227	Lepisosteus_oculatus
ENSHCOG00000011994	xrn2	99	68.983	ENSLAFG00000014624	XRN2	99	67.915	Loxodonta_africana
ENSHCOG00000011994	xrn2	99	68.826	ENSMFAG00000038122	XRN2	99	67.915	Macaca_fascicularis
ENSHCOG00000011994	xrn2	99	68.826	ENSMMUG00000011405	XRN2	99	67.915	Macaca_mulatta
ENSHCOG00000011994	xrn2	99	68.725	ENSMNEG00000040626	XRN2	99	67.814	Macaca_nemestrina
ENSHCOG00000011994	xrn2	99	68.725	ENSMLEG00000041897	XRN2	99	67.814	Mandrillus_leucophaeus
ENSHCOG00000011994	xrn2	95	84.204	ENSMAMG00000008633	xrn2	99	82.834	Mastacembelus_armatus
ENSHCOG00000011994	xrn2	96	82.366	ENSMZEG00005022362	xrn2	98	86.044	Maylandia_zebra
ENSHCOG00000011994	xrn2	99	68.228	ENSMGAG00000003196	XRN2	89	73.848	Meleagris_gallopavo
ENSHCOG00000011994	xrn2	99	69.697	ENSMAUG00000021842	Xrn2	99	69.098	Mesocricetus_auratus
ENSHCOG00000011994	xrn2	99	69.091	ENSMICG00000008126	XRN2	99	68.182	Microcebus_murinus
ENSHCOG00000011994	xrn2	99	69.084	ENSMOCG00000012588	Xrn2	99	68.278	Microtus_ochrogaster
ENSHCOG00000011994	xrn2	94	81.808	ENSMMOG00000017576	xrn2	97	85.374	Mola_mola
ENSHCOG00000011994	xrn2	99	68.927	ENSMODG00000006163	XRN2	99	68.012	Monodelphis_domestica
ENSHCOG00000011994	xrn2	95	81.356	ENSMALG00000011355	xrn2	99	85.114	Monopterus_albus
ENSHCOG00000011994	xrn2	99	69.200	MGP_CAROLIEiJ_G0024400	Xrn2	99	68.283	Mus_caroli
ENSHCOG00000011994	xrn2	99	69.270	ENSMUSG00000027433	Xrn2	99	68.352	Mus_musculus
ENSHCOG00000011994	xrn2	99	69.067	MGP_PahariEiJ_G0025843	Xrn2	99	68.150	Mus_pahari
ENSHCOG00000011994	xrn2	99	69.270	MGP_SPRETEiJ_G0025318	Xrn2	94	82.353	Mus_spretus
ENSHCOG00000011994	xrn2	99	67.861	ENSMPUG00000001198	XRN2	93	66.965	Mustela_putorius_furo
ENSHCOG00000011994	xrn2	99	69.363	ENSMLUG00000001536	XRN2	99	68.453	Myotis_lucifugus
ENSHCOG00000011994	xrn2	99	69.888	ENSNGAG00000018138	Xrn2	99	68.889	Nannospalax_galili
ENSHCOG00000011994	xrn2	96	82.346	ENSNBRG00000008062	xrn2	98	86.143	Neolamprologus_brichardi
ENSHCOG00000011994	xrn2	99	68.826	ENSNLEG00000009991	XRN2	99	67.915	Nomascus_leucogenys
ENSHCOG00000011994	xrn2	54	84.444	ENSMEUG00000008622	-	53	84.444	Notamacropus_eugenii
ENSHCOG00000011994	xrn2	75	72.105	ENSOPRG00000001397	-	63	72.105	Ochotona_princeps
ENSHCOG00000011994	xrn2	99	69.596	ENSODEG00000010745	-	99	68.687	Octodon_degus
ENSHCOG00000011994	xrn2	92	68.160	ENSODEG00000000860	-	92	68.961	Octodon_degus
ENSHCOG00000011994	xrn2	99	81.206	ENSONIG00000018720	xrn2	99	80.020	Oreochromis_niloticus
ENSHCOG00000011994	xrn2	99	68.560	ENSOANG00000015673	XRN2	99	67.472	Ornithorhynchus_anatinus
ENSHCOG00000011994	xrn2	99	69.231	ENSOCUG00000013468	XRN2	99	68.320	Oryctolagus_cuniculus
ENSHCOG00000011994	xrn2	98	80.062	ENSORLG00000017213	xrn2	97	83.678	Oryzias_latipes
ENSHCOG00000011994	xrn2	98	80.311	ENSORLG00020001824	xrn2	99	79.585	Oryzias_latipes_hni
ENSHCOG00000011994	xrn2	98	79.793	ENSORLG00015019747	xrn2	99	79.275	Oryzias_latipes_hsok
ENSHCOG00000011994	xrn2	97	79.832	ENSOMEG00000019820	xrn2	99	79.289	Oryzias_melastigma
ENSHCOG00000011994	xrn2	99	69.130	ENSOGAG00000001068	XRN2	99	68.219	Otolemur_garnettii
ENSHCOG00000011994	xrn2	97	67.809	ENSOARG00000004443	XRN2	99	66.874	Ovis_aries
ENSHCOG00000011994	xrn2	99	68.826	ENSPPAG00000033549	XRN2	99	67.915	Pan_paniscus
ENSHCOG00000011994	xrn2	99	68.826	ENSPPRG00000008732	XRN2	99	67.915	Panthera_pardus
ENSHCOG00000011994	xrn2	97	68.191	ENSPTIG00000015683	XRN2	97	67.256	Panthera_tigris_altaica
ENSHCOG00000011994	xrn2	99	68.826	ENSPTRG00000013308	XRN2	99	67.915	Pan_troglodytes
ENSHCOG00000011994	xrn2	99	68.826	ENSPANG00000018088	XRN2	99	67.915	Papio_anubis
ENSHCOG00000011994	xrn2	99	74.797	ENSPKIG00000016889	xrn2	99	75.051	Paramormyrops_kingsleyae
ENSHCOG00000011994	xrn2	84	73.834	ENSPSIG00000014666	XRN2	100	75.225	Pelodiscus_sinensis
ENSHCOG00000011994	xrn2	99	68.731	ENSPEMG00000000111	Xrn2	99	68.016	Peromyscus_maniculatus_bairdii
ENSHCOG00000011994	xrn2	99	80.183	ENSPFOG00000004182	xrn2	99	80.000	Poecilia_formosa
ENSHCOG00000011994	xrn2	94	81.307	ENSPLAG00000007351	xrn2	97	84.598	Poecilia_latipinna
ENSHCOG00000011994	xrn2	94	79.355	ENSPMEG00000011798	xrn2	99	78.947	Poecilia_mexicana
ENSHCOG00000011994	xrn2	95	80.985	ENSPREG00000012452	xrn2	99	83.784	Poecilia_reticulata
ENSHCOG00000011994	xrn2	99	68.522	ENSPPYG00000010755	XRN2	99	67.879	Pongo_abelii
ENSHCOG00000011994	xrn2	99	65.253	ENSPCAG00000011191	XRN2	99	64.141	Procavia_capensis
ENSHCOG00000011994	xrn2	93	70.476	ENSPCOG00000016468	XRN2	99	61.943	Propithecus_coquereli
ENSHCOG00000011994	xrn2	93	65.357	ENSPVAG00000004596	XRN2	93	65.357	Pteropus_vampyrus
ENSHCOG00000011994	xrn2	96	80.432	ENSPNYG00000001765	xrn2	98	84.083	Pundamilia_nyererei
ENSHCOG00000011994	xrn2	99	76.076	ENSPNAG00000010956	xrn2	99	75.651	Pygocentrus_nattereri
ENSHCOG00000011994	xrn2	99	69.706	ENSRNOG00000011785	Xrn2	99	68.889	Rattus_norvegicus
ENSHCOG00000011994	xrn2	90	74.667	ENSRBIG00000036193	XRN2	100	75.451	Rhinopithecus_bieti
ENSHCOG00000011994	xrn2	99	68.826	ENSRROG00000044400	XRN2	90	67.915	Rhinopithecus_roxellana
ENSHCOG00000011994	xrn2	73	50.463	YOR048C	RAT1	64	52.436	Saccharomyces_cerevisiae
ENSHCOG00000011994	xrn2	99	68.826	ENSSBOG00000021014	XRN2	99	67.915	Saimiri_boliviensis_boliviensis
ENSHCOG00000011994	xrn2	99	74.924	ENSSFOG00015001091	xrn2	99	74.622	Scleropages_formosus
ENSHCOG00000011994	xrn2	99	81.827	ENSSMAG00000007834	xrn2	99	82.204	Scophthalmus_maximus
ENSHCOG00000011994	xrn2	95	80.791	ENSSDUG00000012802	xrn2	99	84.336	Seriola_dumerili
ENSHCOG00000011994	xrn2	95	83.759	ENSSLDG00000021273	xrn2	99	86.195	Seriola_lalandi_dorsalis
ENSHCOG00000011994	xrn2	77	96.000	ENSSARG00000005859	-	62	96.000	Sorex_araneus
ENSHCOG00000011994	xrn2	98	67.425	ENSSPUG00000005485	XRN2	96	67.079	Sphenodon_punctatus
ENSHCOG00000011994	xrn2	99	83.469	ENSSPAG00000016027	xrn2	99	83.367	Stegastes_partitus
ENSHCOG00000011994	xrn2	97	69.718	ENSSSCG00000007109	XRN2	99	66.869	Sus_scrofa
ENSHCOG00000011994	xrn2	98	68.802	ENSTGUG00000007535	XRN2	99	66.867	Taeniopygia_guttata
ENSHCOG00000011994	xrn2	99	79.259	ENSTRUG00000015489	xrn2	99	79.421	Takifugu_rubripes
ENSHCOG00000011994	xrn2	94	82.619	ENSTNIG00000010712	xrn2	99	77.495	Tetraodon_nigroviridis
ENSHCOG00000011994	xrn2	99	68.655	ENSTBEG00000004119	XRN2	99	68.016	Tupaia_belangeri
ENSHCOG00000011994	xrn2	93	77.522	ENSTTRG00000009087	XRN2	93	76.761	Tursiops_truncatus
ENSHCOG00000011994	xrn2	99	69.293	ENSUAMG00000024634	XRN2	94	85.158	Ursus_americanus
ENSHCOG00000011994	xrn2	97	68.672	ENSUMAG00000004012	XRN2	95	67.739	Ursus_maritimus
ENSHCOG00000011994	xrn2	89	63.512	ENSVPAG00000010694	XRN2	91	62.045	Vicugna_pacos
ENSHCOG00000011994	xrn2	99	69.130	ENSVVUG00000012178	XRN2	99	68.219	Vulpes_vulpes
ENSHCOG00000011994	xrn2	99	69.200	ENSXETG00000023501	xrn2	94	73.737	Xenopus_tropicalis
ENSHCOG00000011994	xrn2	99	80.285	ENSXMAG00000000242	xrn2	94	86.698	Xiphophorus_maculatus