EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSHCOG00000012010 (Gene tree)
Gene ID
109507778
Gene Symbol
lig4
Alias
zgc:165595
Full Name
DNA ligase 4
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Minus strand
Length
5379 bases
Position
chrKV880491.1:659476-664854
Accession
109507778
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000023467RNA_ligasePF09414.101.1e-0911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000025858-4484XM_019857427ENSHCOP00000023467910 (aa)XP_019712986UPI00094EDFD2
Gene Model
Click here to download ENSHCOG00000012010's gene model file
Pathways
Pathway IDPathway NameSource
hcq03450Non-homologous end-joiningKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012010's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000012010lig49964.835ENSG00000174405LIG410065.758Homo_sapiens
ENSHCOG00000012010lig410083.333ENSAPOG00000000866lig410083.333Acanthochromis_polyacanthus
ENSHCOG00000012010lig49963.417ENSAMEG00000019685LIG49963.417Ailuropoda_melanoleuca
ENSHCOG00000012010lig49982.656ENSACIG00000018309lig49982.656Amphilophus_citrinellus
ENSHCOG00000012010lig410083.772ENSAOCG00000011768lig410083.772Amphiprion_ocellaris
ENSHCOG00000012010lig410083.991ENSAPEG00000017815lig410083.991Amphiprion_percula
ENSHCOG00000012010lig410083.133ENSATEG00000005583lig410083.133Anabas_testudineus
ENSHCOG00000012010lig49666.210ENSAPLG00000001673LIG49966.210Anas_platyrhynchos
ENSHCOG00000012010lig49866.555ENSACAG00000014566LIG49966.555Anolis_carolinensis
ENSHCOG00000012010lig49964.835ENSANAG00000012446LIG49964.835Aotus_nancymaae
ENSHCOG00000012010lig49981.229ENSACLG00000027051lig49981.229Astatotilapia_calliptera
ENSHCOG00000012010lig410076.439ENSAMXG00000008192lig49576.439Astyanax_mexicanus
ENSHCOG00000012010lig49964.615ENSBTAG00000015868LIG49964.615Bos_taurus
ENSHCOG00000012010lig49964.396ENSCJAG00000014689LIG49964.396Callithrix_jacchus
ENSHCOG00000012010lig410063.795ENSCAFG00000006031LIG410064.013Canis_familiaris
ENSHCOG00000012010lig410063.795ENSCAFG00020021230LIG410064.013Canis_lupus_dingo
ENSHCOG00000012010lig49964.505ENSCHIG00000001019LIG49964.505Capra_hircus
ENSHCOG00000012010lig49964.609ENSCAPG00000006284LIG49964.609Cavia_aperea
ENSHCOG00000012010lig49964.184ENSCPOG00000014266LIG49964.184Cavia_porcellus
ENSHCOG00000012010lig49964.725ENSCCAG00000019971LIG49964.725Cebus_capucinus
ENSHCOG00000012010lig49864.634ENSCATG00000021075LIG49964.634Cercocebus_atys
ENSHCOG00000012010lig49964.505ENSCLAG00000003376LIG49964.505Chinchilla_lanigera
ENSHCOG00000012010lig49964.066ENSCSAG00000000211LIG49964.066Chlorocebus_sabaeus
ENSHCOG00000012010lig49868.368ENSCPBG00000023291LIG49868.368Chrysemys_picta_bellii
ENSHCOG00000012010lig46946.445ENSCING00000009536-9646.445Ciona_intestinalis
ENSHCOG00000012010lig48344.868ENSCSAVG00000010336-9844.868Ciona_savignyi
ENSHCOG00000012010lig49964.176ENSCANG00000005805LIG49964.176Colobus_angolensis_palliatus
ENSHCOG00000012010lig49964.215ENSCGRG00001012072Lig49964.215Cricetulus_griseus_chok1gshd
ENSHCOG00000012010lig49964.215ENSCGRG00000013417Lig49964.215Cricetulus_griseus_crigri
ENSHCOG00000012010lig49779.415ENSCSEG00000013905lig49679.415Cynoglossus_semilaevis
ENSHCOG00000012010lig410082.237ENSCVAG00000007896lig410082.237Cyprinodon_variegatus
ENSHCOG00000012010lig410075.658ENSDARG00000060620lig410075.658Danio_rerio
ENSHCOG00000012010lig49963.447ENSDNOG00000000513LIG49963.447Dasypus_novemcinctus
ENSHCOG00000012010lig49865.299ENSDORG00000027303Lig49965.299Dipodomys_ordii
ENSHCOG00000012010lig49231.864FBgn0030506Lig49331.864Drosophila_melanogaster
ENSHCOG00000012010lig49862.971ENSETEG00000015563LIG410063.193Echinops_telfairi
ENSHCOG00000012010lig49945.331ENSEBUG00000014243lig49945.331Eptatretus_burgeri
ENSHCOG00000012010lig49963.297ENSEASG00005022073LIG49963.297Equus_asinus_asinus
ENSHCOG00000012010lig49963.187ENSECAG00000003257LIG49963.187Equus_caballus
ENSHCOG00000012010lig49878.444ENSELUG00000006787lig49978.778Esox_lucius
ENSHCOG00000012010lig49963.956ENSFCAG00000031985LIG49963.956Felis_catus
ENSHCOG00000012010lig48868.579ENSFALG00000004214LIG49868.579Ficedula_albicollis
ENSHCOG00000012010lig49963.736ENSFDAG00000008973LIG49963.736Fukomys_damarensis
ENSHCOG00000012010lig410082.475ENSFHEG00000007398lig49182.475Fundulus_heteroclitus
ENSHCOG00000012010lig48576.744ENSGMOG00000012843lig49977.003Gadus_morhua
ENSHCOG00000012010lig49964.945ENSGALG00000016854LIG49964.945Gallus_gallus
ENSHCOG00000012010lig49981.182ENSGAFG00000019779lig49681.291Gambusia_affinis
ENSHCOG00000012010lig410080.373ENSGACG00000014135lig49980.373Gasterosteus_aculeatus
ENSHCOG00000012010lig49964.615ENSGGOG00000027771LIG49964.615Gorilla_gorilla
ENSHCOG00000012010lig49981.229ENSHBUG00000006245lig49981.229Haplochromis_burtoni
ENSHCOG00000012010lig49963.956ENSHGLG00000000718LIG49963.956Heterocephalus_glaber_female
ENSHCOG00000012010lig49963.956ENSHGLG00100003265LIG49963.956Heterocephalus_glaber_male
ENSHCOG00000012010lig410074.781ENSIPUG00000013748lig410074.781Ictalurus_punctatus
ENSHCOG00000012010lig49964.835ENSSTOG00000024303LIG49964.725Ictidomys_tridecemlineatus
ENSHCOG00000012010lig49963.516ENSJJAG00000006750Lig49963.516Jaculus_jaculus
ENSHCOG00000012010lig410080.373ENSKMAG00000001149lig410080.373Kryptolebias_marmoratus
ENSHCOG00000012010lig49182.850ENSLBEG00000014578lig410082.850Labrus_bergylta
ENSHCOG00000012010lig49967.179ENSLACG00000003282LIG49967.179Latimeria_chalumnae
ENSHCOG00000012010lig49971.508ENSLOCG00000008901lig49771.508Lepisosteus_oculatus
ENSHCOG00000012010lig49963.198ENSLAFG00000031152LIG49963.198Loxodonta_africana
ENSHCOG00000012010lig49964.066ENSMFAG00000037235LIG49964.066Macaca_fascicularis
ENSHCOG00000012010lig49963.956ENSMMUG00000008874LIG49963.956Macaca_mulatta
ENSHCOG00000012010lig49964.066ENSMNEG00000023575LIG49964.066Macaca_nemestrina
ENSHCOG00000012010lig49963.956ENSMLEG00000026720LIG49963.956Mandrillus_leucophaeus
ENSHCOG00000012010lig410084.101ENSMAMG00000008472lig49984.101Mastacembelus_armatus
ENSHCOG00000012010lig49981.229ENSMZEG00005001855lig49981.229Maylandia_zebra
ENSHCOG00000012010lig49865.590ENSMGAG00000015532LIG49865.590Meleagris_gallopavo
ENSHCOG00000012010lig49963.407ENSMOCG00000019000Lig49963.407Microtus_ochrogaster
ENSHCOG00000012010lig410082.088ENSMMOG00000004390lig410082.088Mola_mola
ENSHCOG00000012010lig49964.176ENSMODG00000025064LIG49964.286Monodelphis_domestica
ENSHCOG00000012010lig410082.895ENSMALG00000008555lig410082.895Monopterus_albus
ENSHCOG00000012010lig49964.505MGP_CAROLIEiJ_G0030809Lig49964.505Mus_caroli
ENSHCOG00000012010lig49964.505ENSMUSG00000049717Lig49964.505Mus_musculus
ENSHCOG00000012010lig49964.396MGP_PahariEiJ_G0021270Lig49964.396Mus_pahari
ENSHCOG00000012010lig49964.505MGP_SPRETEiJ_G0031917Lig49964.505Mus_spretus
ENSHCOG00000012010lig49963.895ENSMPUG00000018675LIG49963.895Mustela_putorius_furo
ENSHCOG00000012010lig49963.736ENSMLUG00000001267LIG49963.736Myotis_lucifugus
ENSHCOG00000012010lig49965.055ENSNGAG00000013258Lig49965.055Nannospalax_galili
ENSHCOG00000012010lig49981.010ENSNBRG00000021252lig49981.010Neolamprologus_brichardi
ENSHCOG00000012010lig49963.956ENSNLEG00000007888LIG49963.956Nomascus_leucogenys
ENSHCOG00000012010lig49962.857ENSOPRG00000005765LIG49962.857Ochotona_princeps
ENSHCOG00000012010lig49963.666ENSODEG00000019683LIG49963.666Octodon_degus
ENSHCOG00000012010lig49981.339ENSONIG00000011969lig49981.339Oreochromis_niloticus
ENSHCOG00000012010lig49964.176ENSOCUG00000015734LIG49964.176Oryctolagus_cuniculus
ENSHCOG00000012010lig49979.628ENSORLG00000004041lig49979.628Oryzias_latipes
ENSHCOG00000012010lig49979.628ENSORLG00020019607lig49979.628Oryzias_latipes_hni
ENSHCOG00000012010lig49979.737ENSORLG00015017754lig49979.737Oryzias_latipes_hsok
ENSHCOG00000012010lig47684.203ENSOMEG00000003459lig410084.203Oryzias_melastigma
ENSHCOG00000012010lig49963.746ENSOGAG00000032120LIG49963.746Otolemur_garnettii
ENSHCOG00000012010lig48268.548ENSOARG00000005590LIG49868.548Ovis_aries
ENSHCOG00000012010lig49964.615ENSPPAG00000032998LIG49964.615Pan_paniscus
ENSHCOG00000012010lig49964.286ENSPPRG00000017804LIG49964.286Panthera_pardus
ENSHCOG00000012010lig49964.066ENSPTIG00000010051LIG49964.066Panthera_tigris_altaica
ENSHCOG00000012010lig49964.725ENSPTRG00000006025LIG49964.725Pan_troglodytes
ENSHCOG00000012010lig49864.745ENSPANG00000007562LIG49964.745Papio_anubis
ENSHCOG00000012010lig410074.013ENSPKIG00000011645lig49974.013Paramormyrops_kingsleyae
ENSHCOG00000012010lig49868.409ENSPSIG00000001504LIG49868.409Pelodiscus_sinensis
ENSHCOG00000012010lig49877.629ENSPMGG00000013486lig410077.317Periophthalmus_magnuspinnatus
ENSHCOG00000012010lig49963.129ENSPEMG00000000076Lig49963.129Peromyscus_maniculatus_bairdii
ENSHCOG00000012010lig49964.066ENSPCIG00000021882LIG49964.066Phascolarctos_cinereus
ENSHCOG00000012010lig410082.366ENSPFOG00000000797lig410082.366Poecilia_formosa
ENSHCOG00000012010lig410082.256ENSPLAG00000001196lig410082.256Poecilia_latipinna
ENSHCOG00000012010lig410082.475ENSPMEG00000021353lig410082.585Poecilia_mexicana
ENSHCOG00000012010lig410081.818ENSPREG00000007323lig410081.928Poecilia_reticulata
ENSHCOG00000012010lig49964.066ENSPPYG00000005540LIG49964.066Pongo_abelii
ENSHCOG00000012010lig49963.626ENSPVAG00000016403LIG49963.407Pteropus_vampyrus
ENSHCOG00000012010lig49981.229ENSPNYG00000009660lig49981.229Pundamilia_nyererei
ENSHCOG00000012010lig49878.444ENSPNAG00000028056lig49978.444Pygocentrus_nattereri
ENSHCOG00000012010lig49878.444ENSPNAG00000028069LIG49978.444Pygocentrus_nattereri
ENSHCOG00000012010lig49963.626ENSRNOG00000014605Lig49963.626Rattus_norvegicus
ENSHCOG00000012010lig49963.516ENSRBIG00000039962LIG49963.516Rhinopithecus_bieti
ENSHCOG00000012010lig49964.286ENSRROG00000006040LIG49964.286Rhinopithecus_roxellana
ENSHCOG00000012010lig49964.615ENSSBOG00000019029LIG49964.615Saimiri_boliviensis_boliviensis
ENSHCOG00000012010lig49961.868ENSSHAG00000009525LIG49961.868Sarcophilus_harrisii
ENSHCOG00000012010lig410074.561ENSSFOG00015012835lig410074.561Scleropages_formosus
ENSHCOG00000012010lig410078.070ENSSMAG00000011267lig410078.070Scophthalmus_maximus
ENSHCOG00000012010lig410082.552ENSSDUG00000010343lig410082.552Seriola_dumerili
ENSHCOG00000012010lig410080.895ENSSLDG00000003239lig410081.223Seriola_lalandi_dorsalis
ENSHCOG00000012010lig49963.974ENSSARG00000006573LIG49963.974Sorex_araneus
ENSHCOG00000012010lig49268.609ENSSPUG00000002444LIG410068.609Sphenodon_punctatus
ENSHCOG00000012010lig410083.443ENSSPAG00000001609lig410083.443Stegastes_partitus
ENSHCOG00000012010lig49963.846ENSSSCG00000009540LIG49963.846Sus_scrofa
ENSHCOG00000012010lig49866.481ENSTGUG00000010795LIG49966.481Taeniopygia_guttata
ENSHCOG00000012010lig410081.140ENSTRUG00000009984lig410081.140Takifugu_rubripes
ENSHCOG00000012010lig410079.167ENSTNIG00000010348lig410079.386Tetraodon_nigroviridis
ENSHCOG00000012010lig49963.846ENSTBEG00000017741LIG49963.736Tupaia_belangeri
ENSHCOG00000012010lig49963.516ENSTTRG00000012660LIG49963.516Tursiops_truncatus
ENSHCOG00000012010lig49963.227ENSUAMG00000003773LIG49963.227Ursus_americanus
ENSHCOG00000012010lig49965.827ENSXETG00000002654lig49965.827Xenopus_tropicalis
ENSHCOG00000012010lig410081.490ENSXCOG00000017401lig410081.490Xiphophorus_couchianus
ENSHCOG00000012010lig410081.818ENSXMAG00000015142lig49981.818Xiphophorus_maculatus

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