EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000012019 (Gene tree)
Gene ID
109522530
Gene Symbol
MSI1
Alias
-
Full Name
RNA-binding protein Musashi homolog 1-like
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Minus strand
Length
17602 bases
Position
chrKV880150.1:1386524-1404125
Accession
109522530
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000023456RRM_1PF00076.224.7e-3412
ENSHCOP00000023456RRM_1PF00076.224.7e-3422
ENSHCOP00000009539RRM_1PF00076.225.9e-3412
ENSHCOP00000009539RRM_1PF00076.225.9e-3422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000015695MSI1-2021064-ENSHCOP00000009539331 (aa)--
ENSHCOT00000015692MSI1-201924XM_019881181ENSHCOP00000023456307 (aa)XP_019736740-
Gene Model
Click here to download ENSHCOG00000012019's gene model file
Pathways
Pathway IDPathway NameSource
hcq03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012019's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000012019MSI15547.024ENSHCOG00000015341hnrnpaba9337.970
ENSHCOG00000012019MSI15136.471ENSHCOG00000019356rbm24a7438.983
ENSHCOG00000012019MSI110090.541ENSHCOG00000012067-8990.541
ENSHCOG00000012019MSI19468.167ENSHCOG00000000266msi2a8869.453
ENSHCOG00000012019MSI15834.637ENSHCOG00000007174HNRNPA09734.637
ENSHCOG00000012019MSI16535.683ENSHCOG00000019526hnrnpa1b7935.683
ENSHCOG00000012019MSI15835.882ENSHCOG00000002224tardbp7235.526
ENSHCOG00000012019MSI16045.783ENSHCOG00000000087hnrnpd7445.783
ENSHCOG00000012019MSI15446.707ENSHCOG00000009363-8341.333
ENSHCOG00000012019MSI19374.009ENSHCOG00000017241-6674.208
ENSHCOG00000012019MSI15839.779ENSHCOG00000000313HNRNPA35539.779
ENSHCOG00000012019MSI15631.818ENSHCOG00000012571rbm14b9631.765
ENSHCOG00000012019MSI16137.791ENSHCOG00000007180-9136.232
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000012019MSI110080.938ENSG00000135097MSI19984.914Homo_sapiens
ENSHCOG00000012019MSI19590.476ENSAPOG00000023458-9190.476Acanthochromis_polyacanthus
ENSHCOG00000012019MSI110095.050ENSAPOG00000003191MSI19097.125Acanthochromis_polyacanthus
ENSHCOG00000012019MSI110089.270ENSAMEG00000013302MSI18289.270Ailuropoda_melanoleuca
ENSHCOG00000012019MSI19695.423ENSACIG00000017754-7891.883Amphilophus_citrinellus
ENSHCOG00000012019MSI110085.209ENSAOCG00000009031-9584.887Amphiprion_ocellaris
ENSHCOG00000012019MSI19597.125ENSAOCG00000003804MSI19097.125Amphiprion_ocellaris
ENSHCOG00000012019MSI19597.125ENSAPEG00000003245MSI19097.125Amphiprion_percula
ENSHCOG00000012019MSI19590.476ENSAPEG00000006857-7690.476Amphiprion_percula
ENSHCOG00000012019MSI110088.146ENSATEG00000023779-9388.146Anabas_testudineus
ENSHCOG00000012019MSI110090.572ENSATEG00000017059MSI19190.132Anabas_testudineus
ENSHCOG00000012019MSI110080.531ENSACAG00000002762MSI19981.416Anolis_carolinensis
ENSHCOG00000012019MSI17984.470ENSANAG00000027901-8884.470Aotus_nancymaae
ENSHCOG00000012019MSI110080.938ENSANAG00000027151MSI19880.938Aotus_nancymaae
ENSHCOG00000012019MSI19591.083ENSACLG00000000117-9691.083Astatotilapia_calliptera
ENSHCOG00000012019MSI110090.615ENSACLG00000011230MSI19094.921Astatotilapia_calliptera
ENSHCOG00000012019MSI110088.333ENSAMXG00000038960msi17588.333Astyanax_mexicanus
ENSHCOG00000012019MSI110085.714ENSBTAG00000009800MSI110085.714Bos_taurus
ENSHCOG00000012019MSI110085.714ENSCJAG00000008578MSI19880.938Callithrix_jacchus
ENSHCOG00000012019MSI110080.645ENSCAFG00000010283MSI19880.645Canis_familiaris
ENSHCOG00000012019MSI110080.707ENSCAFG00020020585MSI110080.707Canis_lupus_dingo
ENSHCOG00000012019MSI110080.233ENSCHIG00000024304MSI19880.233Capra_hircus
ENSHCOG00000012019MSI110080.122ENSTSYG00000033949MSI19580.122Carlito_syrichta
ENSHCOG00000012019MSI110079.853ENSCAPG00000003919MSI17879.853Cavia_aperea
ENSHCOG00000012019MSI110080.938ENSCPOG00000012361MSI110080.938Cavia_porcellus
ENSHCOG00000012019MSI110080.938ENSCCAG00000035567MSI19880.938Cebus_capucinus
ENSHCOG00000012019MSI110083.082ENSCATG00000030019MSI19883.082Cercocebus_atys
ENSHCOG00000012019MSI110080.938ENSCLAG00000011329MSI110080.938Chinchilla_lanigera
ENSHCOG00000012019MSI17390.135ENSCSAG00000002265MSI18983.984Chlorocebus_sabaeus
ENSHCOG00000012019MSI110088.424ENSCPBG00000011349MSI110083.333Chrysemys_picta_bellii
ENSHCOG00000012019MSI110080.183ENSCANG00000040651MSI110080.183Colobus_angolensis_palliatus
ENSHCOG00000012019MSI110080.938ENSCGRG00001018883Msi19880.938Cricetulus_griseus_chok1gshd
ENSHCOG00000012019MSI110080.243ENSCGRG00000002191Msi17280.243Cricetulus_griseus_crigri
ENSHCOG00000012019MSI110089.935ENSCSEG00000008352-9489.935Cynoglossus_semilaevis
ENSHCOG00000012019MSI110086.971ENSCSEG00000011032MSI110086.971Cynoglossus_semilaevis
ENSHCOG00000012019MSI19595.238ENSCSEG00000005834-9095.223Cynoglossus_semilaevis
ENSHCOG00000012019MSI17677.340ENSCVAG00000017463-8970.370Cyprinodon_variegatus
ENSHCOG00000012019MSI15166.667ENSCVAG00000017430zgc:1107967866.667Cyprinodon_variegatus
ENSHCOG00000012019MSI110091.558ENSCVAG00000009100MSI19491.558Cyprinodon_variegatus
ENSHCOG00000012019MSI110088.851ENSDARG00000010710msi110090.654Danio_rerio
ENSHCOG00000012019MSI17988.119ENSDARG00000102015CABZ01037298.19388.119Danio_rerio
ENSHCOG00000012019MSI110077.532ENSDNOG00000005713MSI19177.532Dasypus_novemcinctus
ENSHCOG00000012019MSI110079.641ENSDORG00000005610Msi19479.641Dipodomys_ordii
ENSHCOG00000012019MSI110077.744ENSETEG00000004756MSI110077.439Echinops_telfairi
ENSHCOG00000012019MSI110085.714ENSEASG00005004736MSI19885.714Equus_asinus_asinus
ENSHCOG00000012019MSI110085.714ENSECAG00000017526MSI19880.938Equus_caballus
ENSHCOG00000012019MSI110085.625ENSELUG00000023280-10085.625Esox_lucius
ENSHCOG00000012019MSI19684.431ENSELUG00000023219MSI18884.431Esox_lucius
ENSHCOG00000012019MSI110085.714ENSFCAG00000011007MSI19880.938Felis_catus
ENSHCOG00000012019MSI110083.667ENSFALG00000007574MSI110083.667Ficedula_albicollis
ENSHCOG00000012019MSI110079.878ENSFDAG00000019586MSI110079.878Fukomys_damarensis
ENSHCOG00000012019MSI110086.711ENSFHEG00000022446MSI19191.111Fundulus_heteroclitus
ENSHCOG00000012019MSI110093.160ENSFHEG00000003560-9693.160Fundulus_heteroclitus
ENSHCOG00000012019MSI19590.096ENSGMOG00000001006MSI19089.776Gadus_morhua
ENSHCOG00000012019MSI19583.962ENSGMOG00000017838-9083.962Gadus_morhua
ENSHCOG00000012019MSI110083.206ENSGALG00000007227MSI19675.499Gallus_gallus
ENSHCOG00000012019MSI19774.333ENSGAFG00000005860-9074.333Gambusia_affinis
ENSHCOG00000012019MSI110090.879ENSGAFG00000021522MSI19095.847Gambusia_affinis
ENSHCOG00000012019MSI110088.673ENSGACG00000012679MSI19488.673Gasterosteus_aculeatus
ENSHCOG00000012019MSI110081.176ENSGACG00000008674-9185.015Gasterosteus_aculeatus
ENSHCOG00000012019MSI110088.424ENSGAGG00000016037MSI19488.424Gopherus_agassizii
ENSHCOG00000012019MSI110080.573ENSGGOG00000010328MSI110080.573Gorilla_gorilla
ENSHCOG00000012019MSI19591.083ENSHBUG00000011841-9191.083Haplochromis_burtoni
ENSHCOG00000012019MSI19594.921ENSHBUG00000021921MSI19094.921Haplochromis_burtoni
ENSHCOG00000012019MSI110080.645ENSHGLG00000012782MSI19880.645Heterocephalus_glaber_female
ENSHCOG00000012019MSI110079.878ENSHGLG00100016848MSI110079.878Heterocephalus_glaber_male
ENSHCOG00000012019MSI110088.000ENSIPUG00000001976msi19988.000Ictalurus_punctatus
ENSHCOG00000012019MSI110080.707ENSSTOG00000009799MSI110080.707Ictidomys_tridecemlineatus
ENSHCOG00000012019MSI110082.143ENSJJAG00000010463Msi19882.143Jaculus_jaculus
ENSHCOG00000012019MSI110073.832ENSJJAG00000010643-9473.832Jaculus_jaculus
ENSHCOG00000012019MSI19591.374ENSKMAG00000011251MSI19091.374Kryptolebias_marmoratus
ENSHCOG00000012019MSI110096.091ENSKMAG00000019877-10096.091Kryptolebias_marmoratus
ENSHCOG00000012019MSI110096.104ENSLBEG00000001375-9095.860Labrus_bergylta
ENSHCOG00000012019MSI110091.262ENSLBEG00000008789MSI19491.262Labrus_bergylta
ENSHCOG00000012019MSI110080.826ENSLACG00000018287MSI110080.826Latimeria_chalumnae
ENSHCOG00000012019MSI15274.157ENSLOCG00000008618zgc:1107965874.157Lepisosteus_oculatus
ENSHCOG00000012019MSI19676.721ENSLAFG00000009412MSI110076.393Loxodonta_africana
ENSHCOG00000012019MSI110080.938ENSMFAG00000001798MSI110080.938Macaca_fascicularis
ENSHCOG00000012019MSI110080.938ENSMMUG00000031527MSI19780.938Macaca_mulatta
ENSHCOG00000012019MSI110085.714ENSMNEG00000040034MSI19885.714Macaca_nemestrina
ENSHCOG00000012019MSI110080.183ENSMLEG00000003921MSI110080.183Mandrillus_leucophaeus
ENSHCOG00000012019MSI110096.417ENSMAMG00000018426-9596.417Mastacembelus_armatus
ENSHCOG00000012019MSI19590.735ENSMAMG00000002279MSI19090.735Mastacembelus_armatus
ENSHCOG00000012019MSI19594.921ENSMZEG00005026892MSI19094.921Maylandia_zebra
ENSHCOG00000012019MSI110091.234ENSMZEG00005000340-9491.234Maylandia_zebra
ENSHCOG00000012019MSI17192.262ENSMGAG00000016518-9992.262Meleagris_gallopavo
ENSHCOG00000012019MSI17390.135ENSMAUG00000016820Msi110087.603Mesocricetus_auratus
ENSHCOG00000012019MSI110081.845ENSMICG00000033181MSI19881.845Microcebus_murinus
ENSHCOG00000012019MSI110080.645ENSMOCG00000002286Msi19880.645Microtus_ochrogaster
ENSHCOG00000012019MSI110094.059ENSMMOG00000012265-9994.059Mola_mola
ENSHCOG00000012019MSI110085.016ENSMMOG00000010492MSI19685.016Mola_mola
ENSHCOG00000012019MSI19655.422ENSMODG00000003189-10055.120Monodelphis_domestica
ENSHCOG00000012019MSI110088.644ENSMALG00000017889MSI19588.644Monopterus_albus
ENSHCOG00000012019MSI110095.765ENSMALG00000001426-10095.765Monopterus_albus
ENSHCOG00000012019MSI110080.645MGP_CAROLIEiJ_G0027626Msi19887.072Mus_caroli
ENSHCOG00000012019MSI110083.025ENSMUSG00000054256Msi19887.072Mus_musculus
ENSHCOG00000012019MSI110083.587MGP_PahariEiJ_G0024206Msi19887.405Mus_pahari
ENSHCOG00000012019MSI110080.645MGP_SPRETEiJ_G0028624Msi19887.072Mus_spretus
ENSHCOG00000012019MSI110080.707ENSMPUG00000003168MSI110080.707Mustela_putorius_furo
ENSHCOG00000012019MSI110071.429ENSMLUG00000010313MSI110071.429Myotis_lucifugus
ENSHCOG00000012019MSI110080.243ENSNGAG00000014508Msi19180.243Nannospalax_galili
ENSHCOG00000012019MSI18985.281ENSNBRG00000018012MSI19485.281Neolamprologus_brichardi
ENSHCOG00000012019MSI110091.234ENSNBRG00000000841-9491.234Neolamprologus_brichardi
ENSHCOG00000012019MSI19670.427ENSNLEG00000015636MSI110070.427Nomascus_leucogenys
ENSHCOG00000012019MSI110060.976ENSMEUG00000015759MSI110060.976Notamacropus_eugenii
ENSHCOG00000012019MSI19575.873ENSOPRG00000016879MSI110075.873Ochotona_princeps
ENSHCOG00000012019MSI110080.183ENSODEG00000006328MSI110080.183Octodon_degus
ENSHCOG00000012019MSI110093.852ENSONIG00000011182MSI19191.083Oreochromis_niloticus
ENSHCOG00000012019MSI110086.510ENSONIG00000019452-9091.463Oreochromis_niloticus
ENSHCOG00000012019MSI110081.029ENSOCUG00000027716MSI110081.029Oryctolagus_cuniculus
ENSHCOG00000012019MSI19595.847ENSORLG00000029593MSI19989.776Oryzias_latipes
ENSHCOG00000012019MSI110090.572ENSORLG00000019978-9390.572Oryzias_latipes
ENSHCOG00000012019MSI110096.091ENSORLG00020008266MSI19996.091Oryzias_latipes_hni
ENSHCOG00000012019MSI19590.794ENSORLG00020001208-6490.794Oryzias_latipes_hni
ENSHCOG00000012019MSI110090.939ENSORLG00015013672-7190.939Oryzias_latipes_hsok
ENSHCOG00000012019MSI110096.091ENSORLG00015003916MSI19996.091Oryzias_latipes_hsok
ENSHCOG00000012019MSI19596.166ENSOMEG00000002272-9496.166Oryzias_melastigma
ENSHCOG00000012019MSI110086.728ENSOMEG00000017536MSI110086.728Oryzias_melastigma
ENSHCOG00000012019MSI110080.233ENSOGAG00000003847MSI19880.233Otolemur_garnettii
ENSHCOG00000012019MSI110077.879ENSOARG00000012097MSI110077.879Ovis_aries
ENSHCOG00000012019MSI110080.183ENSPPAG00000043073MSI110080.183Pan_paniscus
ENSHCOG00000012019MSI110080.938ENSPPRG00000000370MSI19880.938Panthera_pardus
ENSHCOG00000012019MSI110080.707ENSPTIG00000008913MSI110080.707Panthera_tigris_altaica
ENSHCOG00000012019MSI110083.082ENSPTRG00000005531MSI19883.082Pan_troglodytes
ENSHCOG00000012019MSI110080.645ENSPANG00000006335MSI19880.645Papio_anubis
ENSHCOG00000012019MSI110092.857ENSPKIG00000016497MSI19492.857Paramormyrops_kingsleyae
ENSHCOG00000012019MSI110084.709ENSPKIG00000023575-9189.490Paramormyrops_kingsleyae
ENSHCOG00000012019MSI18375.000ENSPSIG00000009621-10075.439Pelodiscus_sinensis
ENSHCOG00000012019MSI110081.288ENSPSIG00000011608-9381.288Pelodiscus_sinensis
ENSHCOG00000012019MSI15585.088ENSPSIG00000016295-9583.761Pelodiscus_sinensis
ENSHCOG00000012019MSI19690.508ENSPMGG00000000514MSI19790.508Periophthalmus_magnuspinnatus
ENSHCOG00000012019MSI110075.380ENSPMGG00000007743-9272.638Periophthalmus_magnuspinnatus
ENSHCOG00000012019MSI110078.932ENSPEMG00000010491Msi19578.932Peromyscus_maniculatus_bairdii
ENSHCOG00000012019MSI110094.170ENSPFOG00000013113MSI19190.794Poecilia_formosa
ENSHCOG00000012019MSI19595.860ENSPFOG00000008319-7795.860Poecilia_formosa
ENSHCOG00000012019MSI19590.794ENSPLAG00000014025-9190.794Poecilia_latipinna
ENSHCOG00000012019MSI19595.860ENSPLAG00000012431-8795.860Poecilia_latipinna
ENSHCOG00000012019MSI110090.939ENSPMEG00000012796MSI19490.939Poecilia_mexicana
ENSHCOG00000012019MSI19595.847ENSPMEG00000007025-9389.776Poecilia_mexicana
ENSHCOG00000012019MSI18085.149ENSPREG00000014574-10085.149Poecilia_reticulata
ENSHCOG00000012019MSI19695.946ENSPREG00000021416-9493.182Poecilia_reticulata
ENSHCOG00000012019MSI110080.059ENSPPYG00000005027MSI19880.059Pongo_abelii
ENSHCOG00000012019MSI17988.265ENSPCAG00000002300MSI17288.265Procavia_capensis
ENSHCOG00000012019MSI110081.845ENSPCOG00000017341MSI19881.845Propithecus_coquereli
ENSHCOG00000012019MSI110064.939ENSPVAG00000002225MSI110064.939Pteropus_vampyrus
ENSHCOG00000012019MSI19591.083ENSPNYG00000002529-9191.083Pundamilia_nyererei
ENSHCOG00000012019MSI19594.921ENSPNYG00000004379MSI19094.921Pundamilia_nyererei
ENSHCOG00000012019MSI110086.364ENSPNAG00000019337msi19189.206Pygocentrus_nattereri
ENSHCOG00000012019MSI110080.386ENSRNOG00000001156Msi110080.386Rattus_norvegicus
ENSHCOG00000012019MSI110080.707ENSRBIG00000036889MSI110080.707Rhinopithecus_bieti
ENSHCOG00000012019MSI110080.000ENSRROG00000041076MSI19380.000Rhinopithecus_roxellana
ENSHCOG00000012019MSI110080.938ENSSBOG00000030259MSI19980.938Saimiri_boliviensis_boliviensis
ENSHCOG00000012019MSI110070.261ENSSHAG00000006834MSI110070.261Sarcophilus_harrisii
ENSHCOG00000012019MSI110091.262ENSSFOG00015005350MSI110091.262Scleropages_formosus
ENSHCOG00000012019MSI110089.527ENSSFOG00015014964-9193.631Scleropages_formosus
ENSHCOG00000012019MSI19595.565ENSSMAG00000009156-7494.634Scophthalmus_maximus
ENSHCOG00000012019MSI110090.236ENSSMAG00000018824MSI19790.236Scophthalmus_maximus
ENSHCOG00000012019MSI19590.794ENSSDUG00000001027MSI19190.794Seriola_dumerili
ENSHCOG00000012019MSI19596.178ENSSDUG00000022697-9989.937Seriola_dumerili
ENSHCOG00000012019MSI110089.937ENSSLDG00000018706-9989.937Seriola_lalandi_dorsalis
ENSHCOG00000012019MSI110090.939ENSSLDG00000016832MSI19490.939Seriola_lalandi_dorsalis
ENSHCOG00000012019MSI110083.333ENSSPUG00000015741MSI110083.333Sphenodon_punctatus
ENSHCOG00000012019MSI15194.017ENSSPAG00000015573zgc:1107966094.017Stegastes_partitus
ENSHCOG00000012019MSI110096.440ENSSPAG00000013098-9696.190Stegastes_partitus
ENSHCOG00000012019MSI18080.000ENSSPAG00000014085-10080.000Stegastes_partitus
ENSHCOG00000012019MSI110085.404ENSSSCG00000029365MSI19885.404Sus_scrofa
ENSHCOG00000012019MSI110081.416ENSTGUG00000009534MSI110081.416Taeniopygia_guttata
ENSHCOG00000012019MSI18187.255ENSTRUG00000016249MSI19578.750Takifugu_rubripes
ENSHCOG00000012019MSI15082.895ENSTRUG00000021586-7982.895Takifugu_rubripes
ENSHCOG00000012019MSI110089.492ENSTRUG00000015636-7989.492Takifugu_rubripes
ENSHCOG00000012019MSI110068.051ENSTNIG00000019814-9468.051Tetraodon_nigroviridis
ENSHCOG00000012019MSI110081.155ENSTNIG00000011469MSI19086.076Tetraodon_nigroviridis
ENSHCOG00000012019MSI110072.263ENSTBEG00000007182MSI110072.161Tupaia_belangeri
ENSHCOG00000012019MSI17987.121ENSTTRG00000005663MSI17787.121Tursiops_truncatus
ENSHCOG00000012019MSI17391.192ENSUAMG00000015514MSI19486.574Ursus_americanus
ENSHCOG00000012019MSI110081.879ENSUMAG00000006176MSI18881.879Ursus_maritimus
ENSHCOG00000012019MSI110081.481ENSVVUG00000020993MSI110079.580Vulpes_vulpes
ENSHCOG00000012019MSI110081.595ENSXETG00000012216msi19481.595Xenopus_tropicalis
ENSHCOG00000012019MSI110083.388ENSXCOG00000017605MSI18983.388Xiphophorus_couchianus
ENSHCOG00000012019MSI110096.417ENSXMAG00000018237-9096.417Xiphophorus_maculatus
ENSHCOG00000012019MSI110087.000ENSXMAG00000027103MSI19087.000Xiphophorus_maculatus

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