EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000012099 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: DNA-directed RNA polymerases I%2C II%2C and III subunit RPABC1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 860 bases
Position: chrLVHJ01012816.1:121-980
Accession: 109522892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023506	RNA_pol_Rpb5_N	PF03871.14	7.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015875	-	381	XM_019881722	ENSHCOP00000023506	127 (aa)	XP_019737281	-

Gene Model

Click here to download ENSHCOG00000012099's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012099's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000012099	-	88	99.107	ENSHCOG00000000906	polr2eb	53	99.107

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000012099	-	88	91.071	ENSG00000099817	POLR2E	80	93.939	Homo_sapiens
ENSHCOG00000012099	-	88	96.429	ENSAPOG00000002935	polr2eb	53	96.429	Acanthochromis_polyacanthus
ENSHCOG00000012099	-	88	91.964	ENSAMEG00000003159	POLR2E	53	91.964	Ailuropoda_melanoleuca
ENSHCOG00000012099	-	75	86.316	ENSACIG00000024371	polr2eb	50	86.316	Amphilophus_citrinellus
ENSHCOG00000012099	-	88	96.429	ENSAOCG00000018166	polr2eb	53	96.429	Amphiprion_ocellaris
ENSHCOG00000012099	-	92	94.017	ENSAPEG00000009000	polr2eb	53	96.429	Amphiprion_percula
ENSHCOG00000012099	-	88	96.429	ENSATEG00000023760	polr2eb	53	96.429	Anabas_testudineus
ENSHCOG00000012099	-	88	91.964	ENSANAG00000038488	POLR2E	56	91.964	Aotus_nancymaae
ENSHCOG00000012099	-	88	95.536	ENSACLG00000005254	polr2eb	53	95.536	Astatotilapia_calliptera
ENSHCOG00000012099	-	88	96.429	ENSAMXG00000018915	POLR2E	53	96.429	Astyanax_mexicanus
ENSHCOG00000012099	-	88	91.964	ENSBTAG00000020776	POLR2E	53	91.964	Bos_taurus
ENSHCOG00000012099	-	88	73.214	WBGene00019246	rpb-5	53	73.214	Caenorhabditis_elegans
ENSHCOG00000012099	-	88	91.964	ENSCAFG00000019546	POLR2E	53	91.964	Canis_familiaris
ENSHCOG00000012099	-	88	91.964	ENSCAFG00020017111	POLR2E	53	91.964	Canis_lupus_dingo
ENSHCOG00000012099	-	88	91.964	ENSCHIG00000014151	POLR2E	53	91.964	Capra_hircus
ENSHCOG00000012099	-	97	86.179	ENSTSYG00000026377	POLR2E	62	86.179	Carlito_syrichta
ENSHCOG00000012099	-	88	91.964	ENSCAPG00000010843	POLR2E	54	91.964	Cavia_aperea
ENSHCOG00000012099	-	88	91.964	ENSCPOG00000001542	POLR2E	53	91.964	Cavia_porcellus
ENSHCOG00000012099	-	88	91.964	ENSCCAG00000025658	POLR2E	56	91.964	Cebus_capucinus
ENSHCOG00000012099	-	88	91.964	ENSCATG00000008926	POLR2E	53	91.964	Cercocebus_atys
ENSHCOG00000012099	-	88	91.964	ENSCLAG00000014874	-	53	91.964	Chinchilla_lanigera
ENSHCOG00000012099	-	88	91.964	ENSCSAG00000012336	POLR2E	53	91.964	Chlorocebus_sabaeus
ENSHCOG00000012099	-	88	92.857	ENSCPBG00000009702	POLR2E	53	92.857	Chrysemys_picta_bellii
ENSHCOG00000012099	-	88	83.929	ENSCING00000024933	-	53	83.929	Ciona_intestinalis
ENSHCOG00000012099	-	92	89.744	ENSCANG00000025560	POLR2E	56	91.964	Colobus_angolensis_palliatus
ENSHCOG00000012099	-	88	91.071	ENSCGRG00001022927	Polr2e	53	91.071	Cricetulus_griseus_chok1gshd
ENSHCOG00000012099	-	88	91.071	ENSCGRG00000016441	Polr2e	52	91.071	Cricetulus_griseus_crigri
ENSHCOG00000012099	-	88	94.643	ENSCSEG00000007107	polr2eb	50	85.263	Cynoglossus_semilaevis
ENSHCOG00000012099	-	88	96.429	ENSCVAG00000019940	polr2eb	53	96.429	Cyprinodon_variegatus
ENSHCOG00000012099	-	88	94.643	ENSDARG00000026183	polr2eb	53	94.643	Danio_rerio
ENSHCOG00000012099	-	88	91.964	ENSDORG00000001154	Polr2e	53	91.964	Dipodomys_ordii
ENSHCOG00000012099	-	88	83.929	FBgn0033571	Rpb5	53	83.929	Drosophila_melanogaster
ENSHCOG00000012099	-	88	87.500	ENSEBUG00000010159	-	54	87.500	Eptatretus_burgeri
ENSHCOG00000012099	-	88	91.964	ENSECAG00000011124	POLR2E	69	66.929	Equus_caballus
ENSHCOG00000012099	-	88	95.536	ENSELUG00000020646	polr2e	53	95.536	Esox_lucius
ENSHCOG00000012099	-	88	95.536	ENSELUG00000005815	POLR2E	53	95.536	Esox_lucius
ENSHCOG00000012099	-	88	91.071	ENSFCAG00000007318	POLR2E	53	91.071	Felis_catus
ENSHCOG00000012099	-	88	92.857	ENSFALG00000013986	POLR2E	58	92.857	Ficedula_albicollis
ENSHCOG00000012099	-	88	91.964	ENSFDAG00000014539	POLR2E	53	91.964	Fukomys_damarensis
ENSHCOG00000012099	-	88	96.429	ENSFHEG00000022398	polr2eb	53	96.429	Fundulus_heteroclitus
ENSHCOG00000012099	-	88	96.429	ENSGMOG00000007615	polr2eb	53	96.429	Gadus_morhua
ENSHCOG00000012099	-	88	92.857	ENSGALG00000002591	POLR2E	53	92.857	Gallus_gallus
ENSHCOG00000012099	-	88	95.536	ENSGAFG00000005087	polr2eb	53	95.536	Gambusia_affinis
ENSHCOG00000012099	-	88	95.536	ENSGACG00000013247	polr2eb	53	95.536	Gasterosteus_aculeatus
ENSHCOG00000012099	-	88	92.857	ENSGAGG00000008356	POLR2E	53	92.857	Gopherus_agassizii
ENSHCOG00000012099	-	88	91.964	ENSGGOG00000011267	POLR2E	56	91.964	Gorilla_gorilla
ENSHCOG00000012099	-	60	88.158	ENSHBUG00000011099	polr2eb	52	88.158	Haplochromis_burtoni
ENSHCOG00000012099	-	88	91.964	ENSHGLG00000013330	POLR2E	53	91.964	Heterocephalus_glaber_female
ENSHCOG00000012099	-	88	91.964	ENSHGLG00100011014	POLR2E	53	91.964	Heterocephalus_glaber_male
ENSHCOG00000012099	-	88	96.429	ENSIPUG00000019801	polr2e	53	96.429	Ictalurus_punctatus
ENSHCOG00000012099	-	88	91.964	ENSSTOG00000002853	POLR2E	53	91.964	Ictidomys_tridecemlineatus
ENSHCOG00000012099	-	88	91.071	ENSJJAG00000016595	-	53	91.071	Jaculus_jaculus
ENSHCOG00000012099	-	88	75.000	ENSJJAG00000015812	-	68	75.000	Jaculus_jaculus
ENSHCOG00000012099	-	88	96.429	ENSKMAG00000005954	polr2eb	53	96.429	Kryptolebias_marmoratus
ENSHCOG00000012099	-	88	96.429	ENSLBEG00000024802	polr2eb	53	96.429	Labrus_bergylta
ENSHCOG00000012099	-	88	93.750	ENSLACG00000013686	POLR2E	53	93.750	Latimeria_chalumnae
ENSHCOG00000012099	-	88	95.536	ENSLOCG00000004599	POLR2E	69	95.536	Lepisosteus_oculatus
ENSHCOG00000012099	-	88	91.964	ENSMFAG00000002884	POLR2E	53	91.964	Macaca_fascicularis
ENSHCOG00000012099	-	88	91.964	ENSMMUG00000013927	POLR2E	53	91.964	Macaca_mulatta
ENSHCOG00000012099	-	88	91.964	ENSMNEG00000034046	-	53	91.964	Macaca_nemestrina
ENSHCOG00000012099	-	90	69.298	ENSMNEG00000033452	-	62	69.298	Macaca_nemestrina
ENSHCOG00000012099	-	88	96.429	ENSMAMG00000018703	polr2eb	53	96.429	Mastacembelus_armatus
ENSHCOG00000012099	-	88	95.536	ENSMZEG00005010796	polr2eb	57	95.536	Maylandia_zebra
ENSHCOG00000012099	-	88	91.150	ENSMGAG00000003769	POLR2E	54	91.150	Meleagris_gallopavo
ENSHCOG00000012099	-	88	91.071	ENSMAUG00000010125	-	59	91.071	Mesocricetus_auratus
ENSHCOG00000012099	-	88	58.929	ENSMAUG00000011003	-	51	58.929	Mesocricetus_auratus
ENSHCOG00000012099	-	88	91.964	ENSMICG00000013063	POLR2E	56	91.964	Microcebus_murinus
ENSHCOG00000012099	-	88	91.071	ENSMOCG00000013414	Polr2e	53	91.071	Microtus_ochrogaster
ENSHCOG00000012099	-	75	86.316	ENSMMOG00000001161	polr2eb	50	86.316	Mola_mola
ENSHCOG00000012099	-	87	89.189	ENSMMOG00000001167	polr2eb	51	89.189	Mola_mola
ENSHCOG00000012099	-	88	92.857	ENSMODG00000005494	POLR2E	53	92.857	Monodelphis_domestica
ENSHCOG00000012099	-	88	95.536	ENSMALG00000021888	polr2eb	53	95.536	Monopterus_albus
ENSHCOG00000012099	-	88	91.071	MGP_CAROLIEiJ_G0015561	Polr2e	53	91.071	Mus_caroli
ENSHCOG00000012099	-	88	91.071	ENSMUSG00000004667	Polr2e	53	91.071	Mus_musculus
ENSHCOG00000012099	-	88	91.071	MGP_PahariEiJ_G0030974	Polr2e	53	91.071	Mus_pahari
ENSHCOG00000012099	-	88	91.071	MGP_SPRETEiJ_G0016379	Polr2e	53	91.071	Mus_spretus
ENSHCOG00000012099	-	88	91.071	ENSMPUG00000008953	POLR2E	53	91.071	Mustela_putorius_furo
ENSHCOG00000012099	-	83	85.849	ENSMLUG00000006376	-	68	83.636	Myotis_lucifugus
ENSHCOG00000012099	-	88	91.964	ENSMLUG00000013193	POLR2E	53	91.964	Myotis_lucifugus
ENSHCOG00000012099	-	88	63.393	ENSNGAG00000017344	-	53	63.393	Nannospalax_galili
ENSHCOG00000012099	-	88	91.071	ENSNGAG00000001147	Polr2e	53	91.071	Nannospalax_galili
ENSHCOG00000012099	-	75	86.316	ENSNBRG00000022772	polr2eb	50	86.316	Neolamprologus_brichardi
ENSHCOG00000012099	-	88	69.643	ENSNLEG00000031364	-	52	69.643	Nomascus_leucogenys
ENSHCOG00000012099	-	88	85.841	ENSNLEG00000001207	-	54	85.841	Nomascus_leucogenys
ENSHCOG00000012099	-	88	70.536	ENSOPRG00000008331	POLR2E	54	70.536	Ochotona_princeps
ENSHCOG00000012099	-	97	66.667	ENSODEG00000011490	-	70	66.667	Octodon_degus
ENSHCOG00000012099	-	88	91.964	ENSODEG00000013230	-	53	91.964	Octodon_degus
ENSHCOG00000012099	-	88	80.357	ENSODEG00000007985	-	59	80.357	Octodon_degus
ENSHCOG00000012099	-	88	95.536	ENSONIG00000002519	polr2eb	53	95.536	Oreochromis_niloticus
ENSHCOG00000012099	-	88	95.536	ENSORLG00000015346	polr2eb	53	95.536	Oryzias_latipes
ENSHCOG00000012099	-	88	95.536	ENSORLG00020020700	polr2e	53	95.536	Oryzias_latipes_hni
ENSHCOG00000012099	-	88	95.536	ENSORLG00015016842	polr2e	53	95.536	Oryzias_latipes_hsok
ENSHCOG00000012099	-	88	96.429	ENSOMEG00000002709	polr2eb	56	96.429	Oryzias_melastigma
ENSHCOG00000012099	-	88	91.964	ENSOGAG00000012311	POLR2E	53	91.964	Otolemur_garnettii
ENSHCOG00000012099	-	88	91.964	ENSOARG00000010994	POLR2E	53	91.964	Ovis_aries
ENSHCOG00000012099	-	88	91.964	ENSPPAG00000003145	POLR2E	59	91.964	Pan_paniscus
ENSHCOG00000012099	-	88	91.071	ENSPPRG00000000777	POLR2E	53	91.071	Panthera_pardus
ENSHCOG00000012099	-	88	91.071	ENSPTIG00000012237	POLR2E	72	91.071	Panthera_tigris_altaica
ENSHCOG00000012099	-	88	91.964	ENSPTRG00000010183	POLR2E	56	91.964	Pan_troglodytes
ENSHCOG00000012099	-	88	91.964	ENSPANG00000018011	POLR2E	53	91.964	Papio_anubis
ENSHCOG00000012099	-	88	94.643	ENSPKIG00000009607	POLR2E	53	94.643	Paramormyrops_kingsleyae
ENSHCOG00000012099	-	88	95.536	ENSPKIG00000024123	POLR2E	53	95.536	Paramormyrops_kingsleyae
ENSHCOG00000012099	-	88	92.857	ENSPSIG00000002870	POLR2E	54	92.857	Pelodiscus_sinensis
ENSHCOG00000012099	-	75	87.368	ENSPMGG00000014354	polr2eb	50	87.368	Periophthalmus_magnuspinnatus
ENSHCOG00000012099	-	88	91.071	ENSPEMG00000023261	Polr2e	53	91.071	Peromyscus_maniculatus_bairdii
ENSHCOG00000012099	-	88	95.536	ENSPFOG00000005734	polr2eb	53	95.536	Poecilia_formosa
ENSHCOG00000012099	-	88	95.536	ENSPLAG00000014496	polr2eb	53	95.536	Poecilia_latipinna
ENSHCOG00000012099	-	88	95.536	ENSPMEG00000008053	polr2eb	53	95.536	Poecilia_mexicana
ENSHCOG00000012099	-	88	95.536	ENSPREG00000006489	polr2eb	53	95.536	Poecilia_reticulata
ENSHCOG00000012099	-	99	84.127	ENSPPYG00000009305	POLR2E	59	84.127	Pongo_abelii
ENSHCOG00000012099	-	52	92.424	ENSPCAG00000016605	POLR2E	59	92.424	Procavia_capensis
ENSHCOG00000012099	-	88	91.964	ENSPCOG00000014491	POLR2E	56	91.964	Propithecus_coquereli
ENSHCOG00000012099	-	88	95.536	ENSPNYG00000019797	polr2eb	57	95.536	Pundamilia_nyererei
ENSHCOG00000012099	-	88	96.429	ENSPNAG00000026263	POLR2E	53	96.429	Pygocentrus_nattereri
ENSHCOG00000012099	-	88	91.071	ENSRNOG00000013545	Polr2e	55	91.071	Rattus_norvegicus
ENSHCOG00000012099	-	88	91.964	ENSRBIG00000028726	-	53	91.964	Rhinopithecus_bieti
ENSHCOG00000012099	-	87	72.973	ENSRBIG00000027259	-	57	72.973	Rhinopithecus_bieti
ENSHCOG00000012099	-	88	91.964	ENSRROG00000043763	POLR2E	54	91.964	Rhinopithecus_roxellana
ENSHCOG00000012099	-	85	33.898	YBR154C	RPB5	52	33.898	Saccharomyces_cerevisiae
ENSHCOG00000012099	-	88	91.964	ENSSBOG00000027241	POLR2E	56	91.964	Saimiri_boliviensis_boliviensis
ENSHCOG00000012099	-	88	92.857	ENSSHAG00000010690	POLR2E	53	92.857	Sarcophilus_harrisii
ENSHCOG00000012099	-	88	96.429	ENSSFOG00015006073	polr2e	53	96.429	Scleropages_formosus
ENSHCOG00000012099	-	88	96.429	ENSSMAG00000012782	polr2eb	53	96.429	Scophthalmus_maximus
ENSHCOG00000012099	-	88	96.429	ENSSDUG00000003352	polr2eb	53	96.429	Seriola_dumerili
ENSHCOG00000012099	-	88	96.429	ENSSLDG00000004965	polr2eb	53	96.429	Seriola_lalandi_dorsalis
ENSHCOG00000012099	-	88	92.857	ENSSPUG00000006114	POLR2E	53	92.857	Sphenodon_punctatus
ENSHCOG00000012099	-	88	96.429	ENSSPAG00000017556	polr2eb	53	96.429	Stegastes_partitus
ENSHCOG00000012099	-	88	91.964	ENSSSCG00000021472	POLR2E	53	91.964	Sus_scrofa
ENSHCOG00000012099	-	84	81.481	ENSTGUG00000000922	POLR2E	76	81.481	Taeniopygia_guttata
ENSHCOG00000012099	-	88	96.429	ENSTRUG00000018238	polr2eb	50	87.368	Takifugu_rubripes
ENSHCOG00000012099	-	88	96.429	ENSTNIG00000013187	polr2eb	53	96.429	Tetraodon_nigroviridis
ENSHCOG00000012099	-	88	91.964	ENSTTRG00000001484	POLR2E	53	91.964	Tursiops_truncatus
ENSHCOG00000012099	-	88	91.964	ENSUAMG00000009166	POLR2E	50	81.053	Ursus_americanus
ENSHCOG00000012099	-	88	93.750	ENSXETG00000003291	polr2e	53	93.750	Xenopus_tropicalis
ENSHCOG00000012099	-	75	86.316	ENSXCOG00000009197	polr2eb	50	86.316	Xiphophorus_couchianus
ENSHCOG00000012099	-	88	95.536	ENSXMAG00000026495	polr2eb	53	95.536	Xiphophorus_maculatus