EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000012198 (Gene tree)
Gene ID: 109531695
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 16346 bases
Position: chrKV880446.1:212853-229198
Accession: 109531695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023514	tRNA-synt_1g	PF09334.11	1.5e-12	1	1
ENSHCOP00000009659	tRNA-synt_1g	PF09334.11	1.7e-12	1	1
ENSHCOP00000009659	Anticodon_1	PF08264.13	3.7e-36	1	1
ENSHCOP00000023514	Anticodon_1	PF08264.13	3.5e-33	1	1
ENSHCOP00000009659	tRNA-synt_1	PF00133.22	3.8e-207	1	1
ENSHCOP00000023514	tRNA-synt_1	PF00133.22	3.8e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015849	-	6302	XM_019896140	ENSHCOP00000009659	1272 (aa)	XP_019751699	UPI00094E645A
ENSHCOT00000015812	-	3651	XM_019896142	ENSHCOP00000023514	1216 (aa)	XP_019751701	-

Gene Model

Click here to download ENSHCOG00000012198's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000012198	vars	61	43.931	ENSHCOG00000017907	vars2	99	44.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000012198	vars	99	64.358	ENSG00000204394	VARS	99	70.859	Homo_sapiens
ENSHCOG00000012198	vars	94	85.750	ENSAPOG00000020921	vars	96	85.750	Acanthochromis_polyacanthus
ENSHCOG00000012198	vars	94	85.750	ENSAPOG00000020691	vars	96	85.750	Acanthochromis_polyacanthus
ENSHCOG00000012198	vars	99	64.774	ENSAMEG00000006417	VARS	99	64.833	Ailuropoda_melanoleuca
ENSHCOG00000012198	vars	99	84.754	ENSACIG00000013752	vars	99	84.754	Amphilophus_citrinellus
ENSHCOG00000012198	vars	99	84.898	ENSAOCG00000002447	vars	99	84.555	Amphiprion_ocellaris
ENSHCOG00000012198	vars	99	85.055	ENSAPEG00000010638	vars	99	84.711	Amphiprion_percula
ENSHCOG00000012198	vars	99	81.975	ENSATEG00000020219	vars	99	81.897	Anabas_testudineus
ENSHCOG00000012198	vars	90	71.069	ENSACAG00000029133	-	99	71.069	Anolis_carolinensis
ENSHCOG00000012198	vars	99	64.436	ENSANAG00000015453	VARS	99	64.363	Aotus_nancymaae
ENSHCOG00000012198	vars	99	85.692	ENSACLG00000025699	vars	97	85.513	Astatotilapia_calliptera
ENSHCOG00000012198	vars	94	79.498	ENSAMXG00000017716	vars	95	79.412	Astyanax_mexicanus
ENSHCOG00000012198	vars	99	64.669	ENSBTAG00000005631	VARS	99	64.729	Bos_taurus
ENSHCOG00000012198	vars	99	64.047	ENSCJAG00000002604	VARS	99	64.031	Callithrix_jacchus
ENSHCOG00000012198	vars	99	64.358	ENSCAFG00000000636	VARS	99	64.419	Canis_familiaris
ENSHCOG00000012198	vars	94	65.672	ENSCAFG00020020790	VARS	96	65.731	Canis_lupus_dingo
ENSHCOG00000012198	vars	96	72.643	ENSCHIG00000011008	VARS	99	64.861	Capra_hircus
ENSHCOG00000012198	vars	99	64.514	ENSTSYG00000001567	VARS	99	64.519	Carlito_syrichta
ENSHCOG00000012198	vars	91	68.021	ENSCAPG00000013736	VARS	98	67.703	Cavia_aperea
ENSHCOG00000012198	vars	99	64.669	ENSCPOG00000000870	VARS	99	64.308	Cavia_porcellus
ENSHCOG00000012198	vars	99	64.514	ENSCCAG00000035656	VARS	99	64.341	Cebus_capucinus
ENSHCOG00000012198	vars	99	64.852	ENSCATG00000022394	VARS	99	64.601	Cercocebus_atys
ENSHCOG00000012198	vars	93	63.689	ENSCLAG00000009470	VARS	97	63.391	Chinchilla_lanigera
ENSHCOG00000012198	vars	99	64.591	ENSCSAG00000008784	VARS	99	64.419	Chlorocebus_sabaeus
ENSHCOG00000012198	vars	80	75.284	ENSCPBG00000007943	VARS	96	75.129	Chrysemys_picta_bellii
ENSHCOG00000012198	vars	99	64.747	ENSCANG00000033570	VARS	99	64.574	Colobus_angolensis_palliatus
ENSHCOG00000012198	vars	99	64.458	ENSCGRG00001005686	Vars	99	64.341	Cricetulus_griseus_chok1gshd
ENSHCOG00000012198	vars	93	62.490	ENSCGRG00000013352	Vars	78	62.377	Cricetulus_griseus_crigri
ENSHCOG00000012198	vars	99	79.670	ENSCSEG00000019652	vars	99	79.670	Cynoglossus_semilaevis
ENSHCOG00000012198	vars	99	85.121	ENSCVAG00000022398	vars	99	84.603	Cyprinodon_variegatus
ENSHCOG00000012198	vars	99	81.176	ENSDARG00000044575	vars	99	81.176	Danio_rerio
ENSHCOG00000012198	vars	86	68.083	ENSDORG00000016433	Vars	93	70.865	Dipodomys_ordii
ENSHCOG00000012198	vars	69	73.237	ENSETEG00000003824	VARS	77	73.237	Echinops_telfairi
ENSHCOG00000012198	vars	59	64.649	ENSEBUG00000004637	vars	99	65.199	Eptatretus_burgeri
ENSHCOG00000012198	vars	53	73.951	ENSEBUG00000007086	vars	82	73.951	Eptatretus_burgeri
ENSHCOG00000012198	vars	99	64.825	ENSEASG00005015673	VARS	99	64.884	Equus_asinus_asinus
ENSHCOG00000012198	vars	99	64.774	ENSECAG00000014620	VARS	99	64.911	Equus_caballus
ENSHCOG00000012198	vars	72	69.925	ENSEEUG00000004116	VARS	73	69.925	Erinaceus_europaeus
ENSHCOG00000012198	vars	99	80.781	ENSELUG00000006550	vars	97	80.781	Esox_lucius
ENSHCOG00000012198	vars	99	64.358	ENSFCAG00000004510	VARS	99	64.341	Felis_catus
ENSHCOG00000012198	vars	83	69.535	ENSFDAG00000011401	VARS	99	69.238	Fukomys_damarensis
ENSHCOG00000012198	vars	99	84.573	ENSFHEG00000010672	vars	99	84.573	Fundulus_heteroclitus
ENSHCOG00000012198	vars	97	83.350	ENSGMOG00000014908	vars	99	78.939	Gadus_morhua
ENSHCOG00000012198	vars	99	84.832	ENSGAFG00000021630	vars	99	84.832	Gambusia_affinis
ENSHCOG00000012198	vars	93	85.859	ENSGACG00000009601	vars	99	81.554	Gasterosteus_aculeatus
ENSHCOG00000012198	vars	50	59.938	ENSGAGG00000006508	-	91	60.461	Gopherus_agassizii
ENSHCOG00000012198	vars	99	64.747	ENSGGOG00000011364	VARS	99	64.519	Gorilla_gorilla
ENSHCOG00000012198	vars	99	85.614	ENSHBUG00000017151	vars	97	85.435	Haplochromis_burtoni
ENSHCOG00000012198	vars	99	64.848	ENSHGLG00000011646	VARS	99	64.848	Heterocephalus_glaber_female
ENSHCOG00000012198	vars	94	61.097	ENSHGLG00100018062	VARS	99	60.982	Heterocephalus_glaber_male
ENSHCOG00000012198	vars	99	80.016	ENSIPUG00000005218	vars	99	79.938	Ictalurus_punctatus
ENSHCOG00000012198	vars	99	64.574	ENSSTOG00000013112	VARS	99	64.501	Ictidomys_tridecemlineatus
ENSHCOG00000012198	vars	99	63.869	ENSJJAG00000019749	-	99	63.629	Jaculus_jaculus
ENSHCOG00000012198	vars	99	52.113	ENSJJAG00000015343	-	98	53.922	Jaculus_jaculus
ENSHCOG00000012198	vars	99	82.482	ENSKMAG00000009455	vars	99	82.875	Kryptolebias_marmoratus
ENSHCOG00000012198	vars	99	86.313	ENSLBEG00000010341	vars	99	82.137	Labrus_bergylta
ENSHCOG00000012198	vars	94	66.173	ENSLACG00000015232	VARS	93	72.149	Latimeria_chalumnae
ENSHCOG00000012198	vars	99	73.920	ENSLOCG00000004240	vars	99	74.275	Lepisosteus_oculatus
ENSHCOG00000012198	vars	99	64.798	ENSLAFG00000023090	VARS	99	64.798	Loxodonta_africana
ENSHCOG00000012198	vars	99	64.669	ENSMFAG00000001032	VARS	99	64.419	Macaca_fascicularis
ENSHCOG00000012198	vars	99	64.669	ENSMMUG00000006828	VARS	99	64.419	Macaca_mulatta
ENSHCOG00000012198	vars	99	64.591	ENSMNEG00000042072	VARS	99	64.341	Macaca_nemestrina
ENSHCOG00000012198	vars	99	64.747	ENSMLEG00000039307	VARS	99	64.496	Mandrillus_leucophaeus
ENSHCOG00000012198	vars	99	85.446	ENSMAMG00000003949	vars	99	85.211	Mastacembelus_armatus
ENSHCOG00000012198	vars	99	85.670	ENSMZEG00005018327	vars	97	85.670	Maylandia_zebra
ENSHCOG00000012198	vars	99	64.380	ENSMAUG00000006715	Vars	99	64.419	Mesocricetus_auratus
ENSHCOG00000012198	vars	99	64.880	ENSMICG00000003548	VARS	99	64.596	Microcebus_murinus
ENSHCOG00000012198	vars	99	63.629	ENSMOCG00000015404	Vars	99	63.707	Microtus_ochrogaster
ENSHCOG00000012198	vars	99	81.583	ENSMMOG00000015801	vars	99	81.426	Mola_mola
ENSHCOG00000012198	vars	99	65.160	ENSMODG00000015204	-	99	64.534	Monodelphis_domestica
ENSHCOG00000012198	vars	99	84.483	ENSMALG00000022532	vars	99	84.483	Monopterus_albus
ENSHCOG00000012198	vars	99	65.133	MGP_CAROLIEiJ_G0021491	Vars	99	65.031	Mus_caroli
ENSHCOG00000012198	vars	99	64.977	ENSMUSG00000007029	Vars	99	64.875	Mus_musculus
ENSHCOG00000012198	vars	99	64.899	MGP_PahariEiJ_G0020486	Vars	99	64.798	Mus_pahari
ENSHCOG00000012198	vars	99	65.055	MGP_SPRETEiJ_G0022396	Vars	99	64.953	Mus_spretus
ENSHCOG00000012198	vars	99	64.536	ENSMPUG00000010821	VARS	99	64.596	Mustela_putorius_furo
ENSHCOG00000012198	vars	78	67.262	ENSMLUG00000013126	VARS	100	67.029	Myotis_lucifugus
ENSHCOG00000012198	vars	99	63.969	ENSNGAG00000012151	Vars	99	64.308	Nannospalax_galili
ENSHCOG00000012198	vars	99	85.379	ENSNBRG00000020520	vars	99	85.200	Neolamprologus_brichardi
ENSHCOG00000012198	vars	99	64.386	ENSNLEG00000006351	VARS	99	64.446	Nomascus_leucogenys
ENSHCOG00000012198	vars	96	72.000	ENSMEUG00000011378	VARS	94	72.000	Notamacropus_eugenii
ENSHCOG00000012198	vars	99	64.926	ENSOPRG00000003607	VARS	99	64.829	Ochotona_princeps
ENSHCOG00000012198	vars	99	64.041	ENSODEG00000017681	VARS	99	64.041	Octodon_degus
ENSHCOG00000012198	vars	99	84.903	ENSONIG00000013064	vars	99	86.510	Oreochromis_niloticus
ENSHCOG00000012198	vars	77	66.392	ENSOANG00000005400	VARS	98	66.078	Ornithorhynchus_anatinus
ENSHCOG00000012198	vars	99	63.867	ENSOCUG00000022463	VARS	99	63.788	Oryctolagus_cuniculus
ENSHCOG00000012198	vars	97	85.844	ENSORLG00000013063	vars	99	83.632	Oryzias_latipes
ENSHCOG00000012198	vars	97	85.844	ENSORLG00020003504	vars	99	84.038	Oryzias_latipes_hni
ENSHCOG00000012198	vars	99	83.777	ENSORLG00015009001	vars	99	84.038	Oryzias_latipes_hsok
ENSHCOG00000012198	vars	99	83.881	ENSOMEG00000015016	vars	99	83.881	Oryzias_melastigma
ENSHCOG00000012198	vars	99	64.302	ENSOGAG00000007515	VARS	99	64.109	Otolemur_garnettii
ENSHCOG00000012198	vars	99	64.514	ENSPPAG00000034012	VARS	99	64.496	Pan_paniscus
ENSHCOG00000012198	vars	99	64.358	ENSPPRG00000014855	VARS	99	64.341	Panthera_pardus
ENSHCOG00000012198	vars	85	68.440	ENSPTIG00000010462	VARS	94	67.777	Panthera_tigris_altaica
ENSHCOG00000012198	vars	99	64.514	ENSPTRG00000017985	VARS	99	64.496	Pan_troglodytes
ENSHCOG00000012198	vars	93	71.626	ENSPANG00000014565	VARS	92	71.626	Papio_anubis
ENSHCOG00000012198	vars	99	77.397	ENSPKIG00000016304	vars	99	77.163	Paramormyrops_kingsleyae
ENSHCOG00000012198	vars	99	81.975	ENSPMGG00000023909	vars	99	81.947	Periophthalmus_magnuspinnatus
ENSHCOG00000012198	vars	99	64.747	ENSPEMG00000006639	Vars	99	64.884	Peromyscus_maniculatus_bairdii
ENSHCOG00000012198	vars	99	64.747	ENSPCIG00000018553	VARS	99	64.126	Phascolarctos_cinereus
ENSHCOG00000012198	vars	99	85.223	ENSPFOG00000015690	vars	99	85.145	Poecilia_formosa
ENSHCOG00000012198	vars	99	85.066	ENSPLAG00000009590	vars	99	84.988	Poecilia_latipinna
ENSHCOG00000012198	vars	99	85.223	ENSPMEG00000004708	vars	99	85.145	Poecilia_mexicana
ENSHCOG00000012198	vars	99	82.750	ENSPREG00000013264	vars	97	88.580	Poecilia_reticulata
ENSHCOG00000012198	vars	99	62.957	ENSPPYG00000016460	VARS	99	62.791	Pongo_abelii
ENSHCOG00000012198	vars	86	66.129	ENSPCAG00000013565	VARS	85	66.308	Procavia_capensis
ENSHCOG00000012198	vars	99	64.619	ENSPCOG00000010942	VARS	99	64.679	Propithecus_coquereli
ENSHCOG00000012198	vars	92	71.516	ENSPVAG00000012403	VARS	90	71.516	Pteropus_vampyrus
ENSHCOG00000012198	vars	99	85.692	ENSPNYG00000022511	vars	99	85.513	Pundamilia_nyererei
ENSHCOG00000012198	vars	97	84.109	ENSPNAG00000020962	vars	99	80.986	Pygocentrus_nattereri
ENSHCOG00000012198	vars	99	64.302	ENSRNOG00000000867	Vars	99	64.186	Rattus_norvegicus
ENSHCOG00000012198	vars	99	64.669	ENSRBIG00000041669	VARS	99	64.496	Rhinopithecus_bieti
ENSHCOG00000012198	vars	99	64.669	ENSRROG00000045490	VARS	99	64.496	Rhinopithecus_roxellana
ENSHCOG00000012198	vars	99	64.152	ENSSBOG00000035402	VARS	99	64.136	Saimiri_boliviensis_boliviensis
ENSHCOG00000012198	vars	99	63.234	ENSSHAG00000006937	VARS	99	62.491	Sarcophilus_harrisii
ENSHCOG00000012198	vars	99	77.535	ENSSFOG00015014272	vars	98	82.401	Scleropages_formosus
ENSHCOG00000012198	vars	99	83.386	ENSSMAG00000009596	vars	99	83.386	Scophthalmus_maximus
ENSHCOG00000012198	vars	99	85.580	ENSSDUG00000014177	vars	99	85.580	Seriola_dumerili
ENSHCOG00000012198	vars	99	85.266	ENSSLDG00000025316	vars	99	85.266	Seriola_lalandi_dorsalis
ENSHCOG00000012198	vars	99	84.248	ENSSPAG00000017068	vars	99	84.169	Stegastes_partitus
ENSHCOG00000012198	vars	99	64.875	ENSSSCG00000038950	VARS	99	64.779	Sus_scrofa
ENSHCOG00000012198	vars	81	80.985	ENSTRUG00000012307	vars	97	80.710	Takifugu_rubripes
ENSHCOG00000012198	vars	99	83.568	ENSTNIG00000008011	vars	99	83.568	Tetraodon_nigroviridis
ENSHCOG00000012198	vars	99	59.274	ENSTTRG00000014128	VARS	95	67.248	Tursiops_truncatus
ENSHCOG00000012198	vars	99	63.219	ENSUAMG00000010424	VARS	99	63.129	Ursus_americanus
ENSHCOG00000012198	vars	99	59.953	ENSUMAG00000013486	VARS	98	63.669	Ursus_maritimus
ENSHCOG00000012198	vars	99	64.569	ENSVVUG00000021323	VARS	99	64.291	Vulpes_vulpes
ENSHCOG00000012198	vars	95	66.776	ENSXETG00000024076	vars	95	66.639	Xenopus_tropicalis
ENSHCOG00000012198	vars	99	83.034	ENSXCOG00000019172	vars	99	83.034	Xiphophorus_couchianus
ENSHCOG00000012198	vars	99	84.965	ENSXMAG00000010927	vars	99	84.910	Xiphophorus_maculatus