EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000012238 (Gene tree)
Gene ID: 109513526
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 6738 bases
Position: chrKV879862.1:192417-199154
Accession: 109513526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000023549	DEAD	PF00270.29	3e-40	1	1
ENSHCOP00000009721	DEAD	PF00270.29	3.5e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000015907	-	1368	-	ENSHCOP00000023549	455 (aa)	-	-
ENSHCOT00000015931	-	2930	XM_019866039	ENSHCOP00000009721	489 (aa)	XP_019721598	UPI00094EF532

Gene Model

Click here to download ENSHCOG00000012238's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000012238	-	65	31.611	ENSHCOG00000007568	ddx18	54	31.611
ENSHCOG00000012238	-	75	39.247	ENSHCOG00000020703	eif4a2	91	39.247
ENSHCOG00000012238	-	68	31.579	ENSHCOG00000008800	ddx5	55	31.579
ENSHCOG00000012238	-	76	30.025	ENSHCOG00000011335	eif4a3	81	30.025
ENSHCOG00000012238	-	76	31.750	ENSHCOG00000006275	-	55	31.750
ENSHCOG00000012238	-	80	34.336	ENSHCOG00000018674	ddx39aa	93	34.336
ENSHCOG00000012238	-	75	30.026	ENSHCOG00000019168	DDX5	59	30.026
ENSHCOG00000012238	-	97	82.911	ENSHCOG00000008184	ddx61	97	82.911
ENSHCOG00000012238	-	97	80.165	ENSHCOG00000012451	ddx6	99	80.206
ENSHCOG00000012238	-	76	30.896	ENSHCOG00000019338	ddx23	54	30.896
ENSHCOG00000012238	-	74	34.301	ENSHCOG00000010002	ddx19	83	34.301
ENSHCOG00000012238	-	79	36.181	ENSHCOG00000001915	ddx20	53	36.181
ENSHCOG00000012238	-	75	38.441	ENSHCOG00000000636	eif4a1b	92	38.441
ENSHCOG00000012238	-	74	31.217	ENSHCOG00000004725	DDX41	58	32.303
ENSHCOG00000012238	-	74	32.796	ENSHCOG00000008961	ddx49	78	32.796
ENSHCOG00000012238	-	74	34.301	ENSHCOG00000009963	ddx19	83	34.301
ENSHCOG00000012238	-	70	33.983	ENSHCOG00000013061	zgc:193690	73	33.983
ENSHCOG00000012238	-	82	31.127	ENSHCOG00000005496	ddx47	83	31.127
ENSHCOG00000012238	-	67	32.059	ENSHCOG00000017168	-	53	32.059
ENSHCOG00000012238	-	76	31.525	ENSHCOG00000003357	ddx42	55	31.783
ENSHCOG00000012238	-	71	32.113	ENSHCOG00000014704	ddx43	53	31.638
ENSHCOG00000012238	-	67	31.471	ENSHCOG00000006456	-	52	31.339
ENSHCOG00000012238	-	76	31.920	ENSHCOG00000016890	-	61	32.601
ENSHCOG00000012238	-	70	31.148	ENSHCOG00000018337	ddx4	60	31.148
ENSHCOG00000012238	-	63	38.983	ENSHCOG00000011492	ddx1	51	38.983
ENSHCOG00000012238	-	81	34.750	ENSHCOG00000009111	-	93	34.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000012238	-	77	93.333	ENSAPOG00000023627	-	95	93.333	Acanthochromis_polyacanthus
ENSHCOG00000012238	-	98	85.177	ENSAPOG00000014829	ddx61	98	85.177	Acanthochromis_polyacanthus
ENSHCOG00000012238	-	100	90.110	ENSACIG00000018355	-	100	90.110	Amphilophus_citrinellus
ENSHCOG00000012238	-	100	90.593	ENSAOCG00000006269	-	100	90.593	Amphiprion_ocellaris
ENSHCOG00000012238	-	98	85.774	ENSAOCG00000007627	ddx61	98	85.774	Amphiprion_ocellaris
ENSHCOG00000012238	-	100	90.593	ENSAPEG00000021368	-	100	90.593	Amphiprion_percula
ENSHCOG00000012238	-	98	85.774	ENSAPEG00000007293	ddx61	98	85.774	Amphiprion_percula
ENSHCOG00000012238	-	100	90.593	ENSAPEG00000020642	-	100	90.593	Amphiprion_percula
ENSHCOG00000012238	-	100	89.366	ENSATEG00000005424	-	100	89.366	Anabas_testudineus
ENSHCOG00000012238	-	97	86.047	ENSATEG00000011302	ddx61	99	85.084	Anabas_testudineus
ENSHCOG00000012238	-	96	86.412	ENSACLG00000027620	ddx61	98	86.412	Astatotilapia_calliptera
ENSHCOG00000012238	-	100	90.593	ENSACLG00000003260	-	100	90.593	Astatotilapia_calliptera
ENSHCOG00000012238	-	97	85.714	ENSAMXG00000032542	ddx61	99	84.774	Astyanax_mexicanus
ENSHCOG00000012238	-	99	85.801	ENSAMXG00000033980	-	99	85.801	Astyanax_mexicanus
ENSHCOG00000012238	-	100	91.002	ENSCSEG00000009893	-	100	91.002	Cynoglossus_semilaevis
ENSHCOG00000012238	-	100	87.730	ENSCVAG00000011006	-	100	87.730	Cyprinodon_variegatus
ENSHCOG00000012238	-	99	84.600	ENSDARG00000018425	ddx61	99	84.600	Danio_rerio
ENSHCOG00000012238	-	99	87.755	ENSELUG00000022538	-	99	87.755	Esox_lucius
ENSHCOG00000012238	-	98	86.722	ENSELUG00000020545	ddx61	98	86.722	Esox_lucius
ENSHCOG00000012238	-	100	87.321	ENSFHEG00000015487	-	100	87.321	Fundulus_heteroclitus
ENSHCOG00000012238	-	96	86.526	ENSGMOG00000013762	ddx61	99	86.013	Gadus_morhua
ENSHCOG00000012238	-	71	85.015	ENSGMOG00000003561	-	100	85.410	Gadus_morhua
ENSHCOG00000012238	-	100	86.122	ENSGAFG00000015865	-	100	86.122	Gambusia_affinis
ENSHCOG00000012238	-	97	83.368	ENSGACG00000003401	ddx61	99	83.368	Gasterosteus_aculeatus
ENSHCOG00000012238	-	98	90.249	ENSGACG00000002413	-	99	90.249	Gasterosteus_aculeatus
ENSHCOG00000012238	-	100	90.593	ENSHBUG00000017033	-	100	90.593	Haplochromis_burtoni
ENSHCOG00000012238	-	96	86.624	ENSHBUG00000017832	ddx61	98	86.624	Haplochromis_burtoni
ENSHCOG00000012238	-	97	86.555	ENSIPUG00000008367	-	99	86.555	Ictalurus_punctatus
ENSHCOG00000012238	-	96	85.075	ENSIPUG00000012823	DDX6	99	83.891	Ictalurus_punctatus
ENSHCOG00000012238	-	100	90.798	ENSKMAG00000007213	-	100	90.798	Kryptolebias_marmoratus
ENSHCOG00000012238	-	97	85.924	ENSLBEG00000001740	ddx61	98	85.924	Labrus_bergylta
ENSHCOG00000012238	-	100	89.919	ENSLBEG00000016890	-	100	89.919	Labrus_bergylta
ENSHCOG00000012238	-	97	82.780	ENSLACG00000015214	ddx61	100	82.780	Latimeria_chalumnae
ENSHCOG00000012238	-	75	77.344	ENSLOCG00000004352	ddx61	94	50.801	Lepisosteus_oculatus
ENSHCOG00000012238	-	100	90.204	ENSMAMG00000005559	-	100	90.204	Mastacembelus_armatus
ENSHCOG00000012238	-	97	85.412	ENSMAMG00000005321	ddx61	97	85.412	Mastacembelus_armatus
ENSHCOG00000012238	-	100	90.593	ENSMZEG00005026268	-	100	90.593	Maylandia_zebra
ENSHCOG00000012238	-	96	86.624	ENSMZEG00005003556	ddx61	98	86.624	Maylandia_zebra
ENSHCOG00000012238	-	72	73.371	ENSMMOG00000008825	-	92	73.371	Mola_mola
ENSHCOG00000012238	-	96	84.861	ENSMMOG00000007415	ddx61	97	84.861	Mola_mola
ENSHCOG00000012238	-	100	81.595	ENSMMOG00000013694	-	100	81.595	Mola_mola
ENSHCOG00000012238	-	100	89.366	ENSMALG00000013817	-	100	89.366	Monopterus_albus
ENSHCOG00000012238	-	97	79.821	ENSMALG00000013776	ddx61	96	79.821	Monopterus_albus
ENSHCOG00000012238	-	100	90.330	ENSNBRG00000015075	-	100	90.330	Neolamprologus_brichardi
ENSHCOG00000012238	-	95	85.355	ENSNBRG00000015800	ddx61	98	85.355	Neolamprologus_brichardi
ENSHCOG00000012238	-	96	86.200	ENSONIG00000011418	ddx61	98	86.200	Oreochromis_niloticus
ENSHCOG00000012238	-	100	90.798	ENSONIG00000013748	-	100	90.798	Oreochromis_niloticus
ENSHCOG00000012238	-	100	88.344	ENSORLG00000009178	-	100	88.344	Oryzias_latipes
ENSHCOG00000012238	-	100	88.344	ENSORLG00020015515	-	100	88.344	Oryzias_latipes_hni
ENSHCOG00000012238	-	100	88.139	ENSORLG00015006764	-	100	88.139	Oryzias_latipes_hsok
ENSHCOG00000012238	-	97	81.780	ENSOMEG00000022326	-	99	81.780	Oryzias_melastigma
ENSHCOG00000012238	-	97	88.235	ENSPKIG00000024264	ddx61	99	86.708	Paramormyrops_kingsleyae
ENSHCOG00000012238	-	98	87.025	ENSPMGG00000013355	-	99	87.025	Periophthalmus_magnuspinnatus
ENSHCOG00000012238	-	100	86.503	ENSPFOG00000005750	-	100	86.503	Poecilia_formosa
ENSHCOG00000012238	-	100	86.503	ENSPLAG00000000403	-	100	86.503	Poecilia_latipinna
ENSHCOG00000012238	-	100	86.735	ENSPMEG00000023737	-	100	86.735	Poecilia_mexicana
ENSHCOG00000012238	-	100	90.593	ENSPNYG00000003986	-	100	90.593	Pundamilia_nyererei
ENSHCOG00000012238	-	96	80.315	ENSPNYG00000015045	ddx61	98	80.315	Pundamilia_nyererei
ENSHCOG00000012238	-	99	85.890	ENSPNAG00000008742	-	99	85.890	Pygocentrus_nattereri
ENSHCOG00000012238	-	97	84.792	ENSPNAG00000024072	ddx61	99	84.792	Pygocentrus_nattereri
ENSHCOG00000012238	-	96	87.315	ENSSFOG00015021404	ddx61	99	85.163	Scleropages_formosus
ENSHCOG00000012238	-	96	86.354	ENSSMAG00000006591	ddx61	97	85.835	Scophthalmus_maximus
ENSHCOG00000012238	-	100	91.002	ENSSMAG00000001793	-	100	91.002	Scophthalmus_maximus
ENSHCOG00000012238	-	96	86.780	ENSSDUG00000009713	ddx61	97	86.258	Seriola_dumerili
ENSHCOG00000012238	-	100	91.020	ENSSDUG00000007530	-	100	91.020	Seriola_dumerili
ENSHCOG00000012238	-	96	86.780	ENSSLDG00000000132	ddx61	97	86.258	Seriola_lalandi_dorsalis
ENSHCOG00000012238	-	100	91.020	ENSSLDG00000007608	-	100	91.020	Seriola_lalandi_dorsalis
ENSHCOG00000012238	-	100	91.002	ENSSPAG00000013878	-	100	91.002	Stegastes_partitus
ENSHCOG00000012238	-	96	86.752	ENSSPAG00000001578	ddx61	98	85.535	Stegastes_partitus
ENSHCOG00000012238	-	99	88.090	ENSTRUG00000012432	-	99	88.090	Takifugu_rubripes
ENSHCOG00000012238	-	98	88.542	ENSTNIG00000003560	-	100	88.542	Tetraodon_nigroviridis
ENSHCOG00000012238	-	100	77.347	ENSXCOG00000001406	-	100	77.347	Xiphophorus_couchianus
ENSHCOG00000012238	-	100	86.327	ENSXMAG00000016090	-	100	86.327	Xiphophorus_maculatus