EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000012540 (Gene tree)
Gene ID: 109513531
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 4-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3334 bases
Position: chrKV879862.1:173077-176410
Accession: 109513531
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000009863	RRM_1	PF00076.22	3.3e-31	1	2
ENSHCOP00000009863	RRM_1	PF00076.22	3.3e-31	2	2
ENSHCOP00000023673	RRM_1	PF00076.22	7.6e-31	1	2
ENSHCOP00000023673	RRM_1	PF00076.22	7.6e-31	2	2
ENSHCOP00000023653	RRM_1	PF00076.22	1.7e-29	1	2
ENSHCOP00000023653	RRM_1	PF00076.22	1.7e-29	2	2
ENSHCOP00000023654	RRM_1	PF00076.22	2.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000016106	-	816	-	ENSHCOP00000009863	271 (aa)	-	-
ENSHCOT00000016135	-	1068	-	ENSHCOP00000023673	355 (aa)	-	-
ENSHCOT00000016067	-	1020	XM_019866046	ENSHCOP00000023653	340 (aa)	XP_019721605	-
ENSHCOT00000016109	-	825	-	ENSHCOP00000023654	274 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000012540's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG
hcq05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012540's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000012540	srsf4	71	32.843	ENSHCOG00000017311	srsf9	80	34.826
ENSHCOG00000012540	srsf4	66	63.388	ENSHCOG00000017557	srsf5a	62	63.441
ENSHCOG00000012540	srsf4	68	72.678	ENSHCOG00000002740	srsf6a	74	58.120
ENSHCOG00000012540	srsf4	66	60.000	ENSHCOG00000005592	srsf5b	80	56.198
ENSHCOG00000012540	srsf4	62	44.253	ENSHCOG00000018918	srsf1a	66	45.614
ENSHCOG00000012540	srsf4	65	35.714	ENSHCOG00000012571	rbm14b	94	34.286
ENSHCOG00000012540	srsf4	85	34.043	ENSHCOG00000008016	-	93	34.274

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000012540	srsf4	98	69.549	ENSG00000116350	SRSF4	71	71.875	Homo_sapiens
ENSHCOG00000012540	srsf4	67	73.077	ENSAPOG00000023399	-	79	59.833	Acanthochromis_polyacanthus
ENSHCOG00000012540	srsf4	82	98.485	ENSAPOG00000020244	srsf4	72	98.485	Acanthochromis_polyacanthus
ENSHCOG00000012540	srsf4	68	82.162	ENSAMEG00000000594	SRSF4	53	89.394	Ailuropoda_melanoleuca
ENSHCOG00000012540	srsf4	68	89.730	ENSACIG00000018649	srsf4	90	87.805	Amphilophus_citrinellus
ENSHCOG00000012540	srsf4	62	86.905	ENSAOCG00000005997	srsf4	92	89.881	Amphiprion_ocellaris
ENSHCOG00000012540	srsf4	62	62.963	ENSAPEG00000020826	srsf4	82	64.348	Amphiprion_percula
ENSHCOG00000012540	srsf4	67	93.956	ENSATEG00000005680	srsf4	84	80.952	Anabas_testudineus
ENSHCOG00000012540	srsf4	98	65.934	ENSANAG00000037134	SRSF4	64	89.394	Aotus_nancymaae
ENSHCOG00000012540	srsf4	78	98.485	ENSACLG00000003395	srsf4	80	94.118	Astatotilapia_calliptera
ENSHCOG00000012540	srsf4	68	74.317	ENSACLG00000021269	-	78	80.303	Astatotilapia_calliptera
ENSHCOG00000012540	srsf4	72	85.507	ENSAMXG00000034811	srsf4	96	85.294	Astyanax_mexicanus
ENSHCOG00000012540	srsf4	68	82.065	ENSBTAG00000013309	SRSF4	62	89.394	Bos_taurus
ENSHCOG00000012540	srsf4	66	49.038	WBGene00004698	rsp-1	97	55.172	Caenorhabditis_elegans
ENSHCOG00000012540	srsf4	97	71.103	ENSCHIG00000022096	SRSF4	60	89.394	Capra_hircus
ENSHCOG00000012540	srsf4	68	82.162	ENSCATG00000031440	SRSF4	58	89.394	Cercocebus_atys
ENSHCOG00000012540	srsf4	68	82.065	ENSCSAG00000001022	SRSF4	59	89.394	Chlorocebus_sabaeus
ENSHCOG00000012540	srsf4	68	82.065	ENSCPBG00000009020	SRSF4	58	89.394	Chrysemys_picta_bellii
ENSHCOG00000012540	srsf4	88	40.643	ENSCING00000024718	-	78	65.625	Ciona_intestinalis
ENSHCOG00000012540	srsf4	66	56.452	ENSCING00000011362	-	65	57.838	Ciona_intestinalis
ENSHCOG00000012540	srsf4	67	60.606	ENSCING00000012370	-	68	63.131	Ciona_intestinalis
ENSHCOG00000012540	srsf4	68	59.794	ENSCING00000020631	-	81	60.101	Ciona_intestinalis
ENSHCOG00000012540	srsf4	66	64.444	ENSCSAVG00000002581	-	74	73.846	Ciona_savignyi
ENSHCOG00000012540	srsf4	68	82.065	ENSCANG00000028667	SRSF4	59	89.394	Colobus_angolensis_palliatus
ENSHCOG00000012540	srsf4	68	91.444	ENSCSEG00000010058	srsf4	82	94.118	Cynoglossus_semilaevis
ENSHCOG00000012540	srsf4	54	66.279	ENSCVAG00000004342	srsf4	77	54.098	Cyprinodon_variegatus
ENSHCOG00000012540	srsf4	96	92.424	ENSDARG00000105293	srsf4	78	92.424	Danio_rerio
ENSHCOG00000012540	srsf4	68	82.162	ENSDNOG00000047961	SRSF4	56	89.394	Dasypus_novemcinctus
ENSHCOG00000012540	srsf4	66	63.388	FBgn0004587	B52	95	59.542	Drosophila_melanogaster
ENSHCOG00000012540	srsf4	67	60.541	ENSEBUG00000001681	srsf4	67	60.989	Eptatretus_burgeri
ENSHCOG00000012540	srsf4	54	63.946	ENSEBUG00000003129	srsf4	69	58.861	Eptatretus_burgeri
ENSHCOG00000012540	srsf4	73	60.101	ENSEBUG00000005588	srsf4	69	51.527	Eptatretus_burgeri
ENSHCOG00000012540	srsf4	68	82.162	ENSEASG00005010168	SRSF4	54	64.338	Equus_asinus_asinus
ENSHCOG00000012540	srsf4	68	82.162	ENSECAG00000021350	SRSF4	54	64.338	Equus_caballus
ENSHCOG00000012540	srsf4	96	60.596	ENSELUG00000017551	srsf4	93	77.519	Esox_lucius
ENSHCOG00000012540	srsf4	68	82.065	ENSFCAG00000027821	SRSF4	62	89.394	Felis_catus
ENSHCOG00000012540	srsf4	68	82.162	ENSFALG00000001346	SRSF4	54	63.602	Ficedula_albicollis
ENSHCOG00000012540	srsf4	84	98.485	ENSFHEG00000007472	srsf4	88	98.780	Fundulus_heteroclitus
ENSHCOG00000012540	srsf4	68	87.500	ENSGMOG00000012906	srsf4	76	72.374	Gadus_morhua
ENSHCOG00000012540	srsf4	89	91.176	ENSGAFG00000018496	srsf4	78	94.118	Gambusia_affinis
ENSHCOG00000012540	srsf4	68	91.892	ENSGACG00000002389	srsf4	57	98.485	Gasterosteus_aculeatus
ENSHCOG00000012540	srsf4	68	82.065	ENSGAGG00000014836	SRSF4	58	89.394	Gopherus_agassizii
ENSHCOG00000012540	srsf4	68	74.317	ENSHBUG00000011326	-	74	80.303	Haplochromis_burtoni
ENSHCOG00000012540	srsf4	68	82.162	ENSSTOG00000015908	SRSF4	61	61.661	Ictidomys_tridecemlineatus
ENSHCOG00000012540	srsf4	68	82.162	ENSJJAG00000022153	Srsf4	53	64.751	Jaculus_jaculus
ENSHCOG00000012540	srsf4	97	95.455	ENSKMAG00000013631	srsf4	79	95.455	Kryptolebias_marmoratus
ENSHCOG00000012540	srsf4	67	75.138	ENSLOCG00000001442	-	80	81.818	Lepisosteus_oculatus
ENSHCOG00000012540	srsf4	68	82.065	ENSLAFG00000002575	SRSF4	66	89.394	Loxodonta_africana
ENSHCOG00000012540	srsf4	68	82.065	ENSMFAG00000041784	SRSF4	59	89.394	Macaca_fascicularis
ENSHCOG00000012540	srsf4	88	71.951	ENSMMUG00000007110	SRSF4	69	66.292	Macaca_mulatta
ENSHCOG00000012540	srsf4	68	82.065	ENSMNEG00000034931	SRSF4	59	89.394	Macaca_nemestrina
ENSHCOG00000012540	srsf4	68	82.065	ENSMLEG00000031619	SRSF4	58	89.394	Mandrillus_leucophaeus
ENSHCOG00000012540	srsf4	78	98.485	ENSMAMG00000004888	srsf4	82	94.118	Mastacembelus_armatus
ENSHCOG00000012540	srsf4	78	98.485	ENSMZEG00005026275	srsf4	91	77.224	Maylandia_zebra
ENSHCOG00000012540	srsf4	68	82.162	ENSMAUG00000021940	Srsf4	54	89.394	Mesocricetus_auratus
ENSHCOG00000012540	srsf4	78	98.485	ENSMMOG00000013653	srsf4	82	94.118	Mola_mola
ENSHCOG00000012540	srsf4	91	89.394	ENSMODG00000011052	SRSF4	74	89.394	Monodelphis_domestica
ENSHCOG00000012540	srsf4	82	98.485	ENSMALG00000013392	srsf4	82	94.118	Monopterus_albus
ENSHCOG00000012540	srsf4	67	82.418	ENSMLUG00000014770	SRSF4	53	64.000	Myotis_lucifugus
ENSHCOG00000012540	srsf4	68	82.162	ENSNGAG00000012225	Srsf4	57	89.394	Nannospalax_galili
ENSHCOG00000012540	srsf4	68	67.391	ENSNLEG00000030787	-	62	67.391	Nomascus_leucogenys
ENSHCOG00000012540	srsf4	68	82.065	ENSNLEG00000009916	SRSF4	59	89.394	Nomascus_leucogenys
ENSHCOG00000012540	srsf4	68	81.622	ENSOPRG00000010098	SRSF4	58	87.879	Ochotona_princeps
ENSHCOG00000012540	srsf4	68	89.674	ENSONIG00000013730	srsf4	70	98.485	Oreochromis_niloticus
ENSHCOG00000012540	srsf4	69	89.247	ENSORLG00020016052	srsf4	67	98.485	Oryzias_latipes_hni
ENSHCOG00000012540	srsf4	89	98.485	ENSORLG00015007566	srsf4	83	94.118	Oryzias_latipes_hsok
ENSHCOG00000012540	srsf4	78	98.485	ENSOMEG00000005541	srsf4	70	98.485	Oryzias_melastigma
ENSHCOG00000012540	srsf4	72	39.175	ENSOARG00000017944	-	97	33.798	Ovis_aries
ENSHCOG00000012540	srsf4	54	80.405	ENSOARG00000002451	SRSF4	80	53.875	Ovis_aries
ENSHCOG00000012540	srsf4	68	82.065	ENSPPRG00000016248	SRSF4	62	89.394	Panthera_pardus
ENSHCOG00000012540	srsf4	68	82.065	ENSPANG00000021937	SRSF4	58	89.394	Papio_anubis
ENSHCOG00000012540	srsf4	68	90.000	ENSPMGG00000013436	srsf4	95	90.551	Periophthalmus_magnuspinnatus
ENSHCOG00000012540	srsf4	100	57.196	ENSPMAG00000009397	srsf4	68	66.484	Petromyzon_marinus
ENSHCOG00000012540	srsf4	80	98.485	ENSPFOG00000001306	srsf4	73	98.485	Poecilia_formosa
ENSHCOG00000012540	srsf4	89	98.485	ENSPLAG00000008812	srsf4	83	94.203	Poecilia_latipinna
ENSHCOG00000012540	srsf4	80	98.485	ENSPMEG00000023638	srsf4	83	94.203	Poecilia_mexicana
ENSHCOG00000012540	srsf4	68	91.398	ENSPREG00000009639	srsf4	83	94.203	Poecilia_reticulata
ENSHCOG00000012540	srsf4	68	82.162	ENSPCAG00000009879	SRSF4	54	64.338	Procavia_capensis
ENSHCOG00000012540	srsf4	68	89.730	ENSPNYG00000003796	srsf4	63	98.485	Pundamilia_nyererei
ENSHCOG00000012540	srsf4	67	87.293	ENSPNAG00000023844	srsf4	75	93.939	Pygocentrus_nattereri
ENSHCOG00000012540	srsf4	68	82.065	ENSRBIG00000035789	SRSF4	59	89.394	Rhinopithecus_bieti
ENSHCOG00000012540	srsf4	68	82.065	ENSRROG00000029463	SRSF4	59	89.394	Rhinopithecus_roxellana
ENSHCOG00000012540	srsf4	56	79.739	ENSSHAG00000012407	SRSF4	70	69.907	Sarcophilus_harrisii
ENSHCOG00000012540	srsf4	67	86.264	ENSSFOG00015020292	srsf4	72	96.104	Scleropages_formosus
ENSHCOG00000012540	srsf4	69	93.011	ENSSMAG00000001707	srsf4	69	98.485	Scophthalmus_maximus
ENSHCOG00000012540	srsf4	78	98.485	ENSSDUG00000007387	srsf4	67	98.485	Seriola_dumerili
ENSHCOG00000012540	srsf4	68	76.882	ENSSLDG00000009745	srsf4	80	68.103	Seriola_lalandi_dorsalis
ENSHCOG00000012540	srsf4	51	50.365	ENSSPUG00000019126	-	87	50.833	Sphenodon_punctatus
ENSHCOG00000012540	srsf4	98	60.479	ENSSPUG00000015318	-	58	87.879	Sphenodon_punctatus
ENSHCOG00000012540	srsf4	84	98.485	ENSSPAG00000014538	srsf4	83	94.118	Stegastes_partitus
ENSHCOG00000012540	srsf4	68	82.065	ENSSSCG00000003589	SRSF4	63	89.394	Sus_scrofa
ENSHCOG00000012540	srsf4	55	80.537	ENSTGUG00000000765	SRSF4	60	90.000	Taeniopygia_guttata
ENSHCOG00000012540	srsf4	69	90.323	ENSTRUG00000011891	srsf4	79	96.970	Takifugu_rubripes
ENSHCOG00000012540	srsf4	69	91.935	ENSTNIG00000005573	srsf4	72	96.970	Tetraodon_nigroviridis
ENSHCOG00000012540	srsf4	72	92.268	ENSTNIG00000000115	-	68	96.970	Tetraodon_nigroviridis
ENSHCOG00000012540	srsf4	68	82.065	ENSTTRG00000002572	SRSF4	62	89.394	Tursiops_truncatus
ENSHCOG00000012540	srsf4	68	82.162	ENSUAMG00000006106	SRSF4	53	89.394	Ursus_americanus
ENSHCOG00000012540	srsf4	69	72.872	ENSXETG00000014380	srsf4	52	60.153	Xenopus_tropicalis
ENSHCOG00000012540	srsf4	68	72.872	ENSXCOG00000003212	-	97	45.902	Xiphophorus_couchianus
ENSHCOG00000012540	srsf4	92	98.485	ENSXCOG00000018826	srsf4	89	88.430	Xiphophorus_couchianus