EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000012694 (Gene tree)
Gene ID
109520806
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
11782 bases
Position
chrKV880101.1:326987-338768
Accession
109520806
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000010092PABPPF00658.184.9e-3111
ENSHCOP00000023821PABPPF00658.185.2e-3111
ENSHCOP00000010092RRM_5PF13893.67.1e-0911
ENSHCOP00000023821RRM_5PF13893.67.7e-0911
ENSHCOP00000010092RRM_1PF00076.221.3e-9014
ENSHCOP00000010092RRM_1PF00076.221.3e-9024
ENSHCOP00000010092RRM_1PF00076.221.3e-9034
ENSHCOP00000010092RRM_1PF00076.221.3e-9044
ENSHCOP00000023821RRM_1PF00076.221.4e-9014
ENSHCOP00000023821RRM_1PF00076.221.4e-9024
ENSHCOP00000023821RRM_1PF00076.221.4e-9034
ENSHCOP00000023821RRM_1PF00076.221.4e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000016415-2553XM_019878308ENSHCOP00000023821626 (aa)XP_019733867UPI00094E522C
ENSHCOT00000016400-1857-ENSHCOP00000010092618 (aa)--
Gene Model
Click here to download ENSHCOG00000012694's gene model file
Pathways
Pathway IDPathway NameSource
hcq03013RNA transportKEGG
hcq03015mRNA surveillance pathwayKEGG
hcq03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012694's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000012694pabpc45530.380ENSHCOG00000019526hnrnpa1b5638.889
ENSHCOG00000012694pabpc45337.500ENSHCOG00000005953-5637.500
ENSHCOG00000012694pabpc45832.278ENSHCOG00000012571rbm14b9432.278
ENSHCOG00000012694pabpc45937.500ENSHCOG00000000258celf16737.500
ENSHCOG00000012694pabpc46431.285ENSHCOG00000011350trnau1apb6331.285
ENSHCOG00000012694pabpc48579.570ENSHCOG00000003175pabpc1b9879.570
ENSHCOG00000012694pabpc45933.684ENSHCOG00000007894-5033.684
ENSHCOG00000012694pabpc46034.940ENSHCOG00000002490elavl48934.940
ENSHCOG00000012694pabpc46036.145ENSHCOG00000015894elavl39236.145
ENSHCOG00000012694pabpc49765.776ENSHCOG00000009270pabpc1l9965.954
ENSHCOG00000012694pabpc49875.159ENSHCOG00000013502pabpc1a9875.637
ENSHCOG00000012694pabpc46133.981ENSHCOG00000020072rbms2a5533.981
ENSHCOG00000012694pabpc46031.250ENSHCOG00000010234ncl5031.928
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000012694pabpc410084.211ENSG00000090621PABPC49996.396Homo_sapiens
ENSHCOG00000012694pabpc49996.278ENSAPOG00000001161pabpc410094.896Acanthochromis_polyacanthus
ENSHCOG00000012694pabpc49749.264ENSAMEG00000015083-9848.622Ailuropoda_melanoleuca
ENSHCOG00000012694pabpc410079.192ENSAMEG00000011535-10078.892Ailuropoda_melanoleuca
ENSHCOG00000012694pabpc410095.095ENSACIG00000023343pabpc410094.146Amphilophus_citrinellus
ENSHCOG00000012694pabpc49996.117ENSAOCG00000021529pabpc410094.737Amphiprion_ocellaris
ENSHCOG00000012694pabpc49996.117ENSAPEG00000019196pabpc410094.737Amphiprion_percula
ENSHCOG00000012694pabpc49995.961ENSATEG00000007402pabpc410094.427Anabas_testudineus
ENSHCOG00000012694pabpc49985.624ENSAPLG00000009729-9984.992Anas_platyrhynchos
ENSHCOG00000012694pabpc49885.409ENSACAG00000002544PABPC49984.698Anolis_carolinensis
ENSHCOG00000012694pabpc410082.942ENSANAG00000025079PABPC410082.316Aotus_nancymaae
ENSHCOG00000012694pabpc410096.172ENSACLG00000019558pabpc410096.172Astatotilapia_calliptera
ENSHCOG00000012694pabpc49985.737ENSAMXG00000018779pabpc49984.786Astyanax_mexicanus
ENSHCOG00000012694pabpc45984.431ENSBTAG00000048536-9384.431Bos_taurus
ENSHCOG00000012694pabpc410080.887ENSBTAG00000017125PABPC410080.398Bos_taurus
ENSHCOG00000012694pabpc47184.615ENSCJAG00000045953-8578.475Callithrix_jacchus
ENSHCOG00000012694pabpc410082.942ENSCJAG00000002512-10082.316Callithrix_jacchus
ENSHCOG00000012694pabpc410082.812ENSCAFG00000003081PABPC410082.160Canis_familiaris
ENSHCOG00000012694pabpc410079.341ENSCAFG00020004161PABPC410079.042Canis_lupus_dingo
ENSHCOG00000012694pabpc49865.723ENSCHIG00000023385-9965.252Capra_hircus
ENSHCOG00000012694pabpc410079.192ENSCHIG00000019398-10079.042Capra_hircus
ENSHCOG00000012694pabpc410082.942ENSTSYG00000006532PABPC410082.316Carlito_syrichta
ENSHCOG00000012694pabpc49982.109ENSCAPG00000015984PABPC410081.947Cavia_aperea
ENSHCOG00000012694pabpc410082.143ENSCPOG00000009552PABPC410082.316Cavia_porcellus
ENSHCOG00000012694pabpc410082.786ENSCCAG00000037306PABPC410082.160Cebus_capucinus
ENSHCOG00000012694pabpc410082.942ENSCATG00000042164PABPC410082.316Cercocebus_atys
ENSHCOG00000012694pabpc410081.988ENSCLAG00000011899PABPC410082.473Chinchilla_lanigera
ENSHCOG00000012694pabpc410079.641ENSCSAG00000001135PABPC410079.192Chlorocebus_sabaeus
ENSHCOG00000012694pabpc48888.654ENSCHOG00000005327PABPC47989.674Choloepus_hoffmanni
ENSHCOG00000012694pabpc49986.572ENSCPBG00000001038PABPC49985.940Chrysemys_picta_bellii
ENSHCOG00000012694pabpc49983.175ENSCANG00000034177PABPC410082.540Colobus_angolensis_palliatus
ENSHCOG00000012694pabpc49884.528ENSCGRG00001018166Pabpc410083.254Cricetulus_griseus_chok1gshd
ENSHCOG00000012694pabpc49784.793ENSCGRG00000009777Pabpc410083.495Cricetulus_griseus_crigri
ENSHCOG00000012694pabpc410095.534ENSCSEG00000000130pabpc410094.577Cynoglossus_semilaevis
ENSHCOG00000012694pabpc49994.805ENSCVAG00000019246pabpc410093.831Cyprinodon_variegatus
ENSHCOG00000012694pabpc49892.185ENSDARG00000059259pabpc410090.909Danio_rerio
ENSHCOG00000012694pabpc49981.866ENSDNOG00000018444-10081.162Dasypus_novemcinctus
ENSHCOG00000012694pabpc410080.858ENSDORG00000011581Pabpc410080.675Dipodomys_ordii
ENSHCOG00000012694pabpc410090.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSHCOG00000012694pabpc48554.779ENSETEG00000009172-9954.044Echinops_telfairi
ENSHCOG00000012694pabpc49676.748ENSEBUG00000013782pabpc49975.637Eptatretus_burgeri
ENSHCOG00000012694pabpc49876.997ENSEBUG00000000992pabpc49976.677Eptatretus_burgeri
ENSHCOG00000012694pabpc410079.341ENSEASG00005014119PABPC410079.192Equus_asinus_asinus
ENSHCOG00000012694pabpc410079.341ENSECAG00000009396PABPC410079.192Equus_caballus
ENSHCOG00000012694pabpc49779.263ENSEEUG00000002962PABPC410078.144Erinaceus_europaeus
ENSHCOG00000012694pabpc49892.516ENSELUG00000003195pabpc410090.767Esox_lucius
ENSHCOG00000012694pabpc410082.812ENSFCAG00000015254-10082.160Felis_catus
ENSHCOG00000012694pabpc49986.256ENSFALG00000000543PABPC49985.624Ficedula_albicollis
ENSHCOG00000012694pabpc410079.491ENSFDAG00000020016-10078.892Fukomys_damarensis
ENSHCOG00000012694pabpc48850.746ENSFDAG00000010581-9949.135Fukomys_damarensis
ENSHCOG00000012694pabpc49995.367ENSFHEG00000007548pabpc410094.409Fundulus_heteroclitus
ENSHCOG00000012694pabpc410090.909ENSGMOG00000019025pabpc410089.969Gadus_morhua
ENSHCOG00000012694pabpc49986.256ENSGALG00000003800PABPC49985.624Gallus_gallus
ENSHCOG00000012694pabpc49993.959ENSGAFG00000018195pabpc410096.890Gambusia_affinis
ENSHCOG00000012694pabpc410093.461ENSGACG00000007179pabpc410093.301Gasterosteus_aculeatus
ENSHCOG00000012694pabpc49986.730ENSGAGG00000001888PABPC49986.098Gopherus_agassizii
ENSHCOG00000012694pabpc410082.942ENSGGOG00000004002PABPC410082.316Gorilla_gorilla
ENSHCOG00000012694pabpc410096.013ENSHBUG00000020206pabpc410095.056Haplochromis_burtoni
ENSHCOG00000012694pabpc410081.988ENSHGLG00000011162PABPC410082.160Heterocephalus_glaber_female
ENSHCOG00000012694pabpc410081.988ENSHGLG00100001580PABPC410082.160Heterocephalus_glaber_male
ENSHCOG00000012694pabpc49791.452ENSIPUG00000016620pabpc410089.590Ictalurus_punctatus
ENSHCOG00000012694pabpc410084.051ENSSTOG00000010416PABPC410083.413Ictidomys_tridecemlineatus
ENSHCOG00000012694pabpc410080.215ENSJJAG00000007781Pabpc410079.755Jaculus_jaculus
ENSHCOG00000012694pabpc49993.301ENSKMAG00000013597pabpc410093.142Kryptolebias_marmoratus
ENSHCOG00000012694pabpc49994.286ENSLBEG00000013654pabpc410093.333Labrus_bergylta
ENSHCOG00000012694pabpc49986.278ENSLACG00000011907PABPC49986.278Latimeria_chalumnae
ENSHCOG00000012694pabpc49990.424ENSLOCG00000001877pabpc410090.110Lepisosteus_oculatus
ENSHCOG00000012694pabpc410084.051ENSLAFG00000000151PABPC410083.413Loxodonta_africana
ENSHCOG00000012694pabpc410082.942ENSMFAG00000041481PABPC410082.316Macaca_fascicularis
ENSHCOG00000012694pabpc410079.641ENSMMUG00000007497PABPC410079.192Macaca_mulatta
ENSHCOG00000012694pabpc410082.942ENSMNEG00000043054PABPC410082.316Macaca_nemestrina
ENSHCOG00000012694pabpc410082.942ENSMLEG00000040716PABPC410082.316Mandrillus_leucophaeus
ENSHCOG00000012694pabpc410096.172ENSMAMG00000010025pabpc410096.172Mastacembelus_armatus
ENSHCOG00000012694pabpc410096.013ENSMZEG00005006141pabpc410095.056Maylandia_zebra
ENSHCOG00000012694pabpc49883.220ENSMGAG00000005408PABPC49982.542Meleagris_gallopavo
ENSHCOG00000012694pabpc49873.313ENSMAUG00000019763-10073.313Mesocricetus_auratus
ENSHCOG00000012694pabpc45880.117ENSMAUG00000004089-9680.117Mesocricetus_auratus
ENSHCOG00000012694pabpc47278.947ENSMAUG00000001295-9777.512Mesocricetus_auratus
ENSHCOG00000012694pabpc48883.935ENSMICG00000016633-10083.574Microcebus_murinus
ENSHCOG00000012694pabpc49974.597ENSMICG00000036729-10074.061Microcebus_murinus
ENSHCOG00000012694pabpc410082.353ENSMOCG00000006763Pabpc410082.316Microtus_ochrogaster
ENSHCOG00000012694pabpc410090.415ENSMMOG00000002363pabpc410090.159Mola_mola
ENSHCOG00000012694pabpc49783.488ENSMODG00000017657-9982.246Monodelphis_domestica
ENSHCOG00000012694pabpc46170.933ENSMODG00000018051-9670.933Monodelphis_domestica
ENSHCOG00000012694pabpc49995.806ENSMALG00000011017pabpc410094.118Monopterus_albus
ENSHCOG00000012694pabpc410078.892MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSHCOG00000012694pabpc49970.345MGP_CAROLIEiJ_G0024864-10071.781Mus_caroli
ENSHCOG00000012694pabpc410083.732ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSHCOG00000012694pabpc49979.211MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSHCOG00000012694pabpc49970.332MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSHCOG00000012694pabpc49545.799ENSMPUG00000006836-10045.289Mustela_putorius_furo
ENSHCOG00000012694pabpc410079.341ENSMPUG00000014414-10079.042Mustela_putorius_furo
ENSHCOG00000012694pabpc410084.211ENSMLUG00000012068PABPC410083.573Myotis_lucifugus
ENSHCOG00000012694pabpc410084.051ENSNGAG00000018292Pabpc410083.413Nannospalax_galili
ENSHCOG00000012694pabpc46198.558ENSNBRG00000009708pabpc49898.558Neolamprologus_brichardi
ENSHCOG00000012694pabpc46696.988ENSNBRG00000010047-7296.988Neolamprologus_brichardi
ENSHCOG00000012694pabpc410082.942ENSNLEG00000011928PABPC410082.316Nomascus_leucogenys
ENSHCOG00000012694pabpc48592.063ENSOPRG00000011984PABPC48692.063Ochotona_princeps
ENSHCOG00000012694pabpc410082.473ENSODEG00000006592-10082.003Octodon_degus
ENSHCOG00000012694pabpc49774.098ENSODEG00000017434-9973.461Octodon_degus
ENSHCOG00000012694pabpc45482.857ENSODEG00000013457-10082.857Octodon_degus
ENSHCOG00000012694pabpc410095.853ENSONIG00000008176pabpc410095.056Oreochromis_niloticus
ENSHCOG00000012694pabpc49986.098ENSOANG00000010001PABPC49985.466Ornithorhynchus_anatinus
ENSHCOG00000012694pabpc49580.189ENSOCUG00000000562PABPC48879.560Oryctolagus_cuniculus
ENSHCOG00000012694pabpc49996.296ENSORLG00000017479pabpc49996.000Oryzias_latipes
ENSHCOG00000012694pabpc49996.296ENSORLG00020018644pabpc49996.000Oryzias_latipes_hni
ENSHCOG00000012694pabpc49996.296ENSORLG00015015042pabpc49996.000Oryzias_latipes_hsok
ENSHCOG00000012694pabpc49994.660ENSOMEG00000014410pabpc410093.153Oryzias_melastigma
ENSHCOG00000012694pabpc410080.763ENSOGAG00000004067PABPC410080.305Otolemur_garnettii
ENSHCOG00000012694pabpc410079.192ENSOARG00000020060PABPC410079.042Ovis_aries
ENSHCOG00000012694pabpc410082.942ENSPPAG00000043625PABPC410082.316Pan_paniscus
ENSHCOG00000012694pabpc410082.812ENSPPRG00000024727PABPC410082.160Panthera_pardus
ENSHCOG00000012694pabpc410082.812ENSPTIG00000005829PABPC410082.160Panthera_tigris_altaica
ENSHCOG00000012694pabpc410082.942ENSPTRG00000000573PABPC410082.316Pan_troglodytes
ENSHCOG00000012694pabpc410082.942ENSPANG00000009484PABPC410082.316Papio_anubis
ENSHCOG00000012694pabpc410089.655ENSPKIG00000025356pabpc410088.871Paramormyrops_kingsleyae
ENSHCOG00000012694pabpc49987.046ENSPSIG00000016892PABPC49986.414Pelodiscus_sinensis
ENSHCOG00000012694pabpc410090.112ENSPMGG00000009073pabpc410089.617Periophthalmus_magnuspinnatus
ENSHCOG00000012694pabpc49979.907ENSPEMG00000024193-10079.283Peromyscus_maniculatus_bairdii
ENSHCOG00000012694pabpc49983.229ENSPEMG00000023569-10082.602Peromyscus_maniculatus_bairdii
ENSHCOG00000012694pabpc48875.087ENSPMAG00000002836pabpc410074.739Petromyzon_marinus
ENSHCOG00000012694pabpc49573.529ENSPMAG00000007885pabpc410072.505Petromyzon_marinus
ENSHCOG00000012694pabpc49786.977ENSPCIG00000020674PABPC49994.175Phascolarctos_cinereus
ENSHCOG00000012694pabpc49994.728ENSPFOG00000002682pabpc410093.770Poecilia_formosa
ENSHCOG00000012694pabpc49994.888ENSPLAG00000010112pabpc410093.930Poecilia_latipinna
ENSHCOG00000012694pabpc49895.292ENSPMEG00000019739pabpc410093.770Poecilia_mexicana
ENSHCOG00000012694pabpc49994.888ENSPREG00000001589pabpc410093.930Poecilia_reticulata
ENSHCOG00000012694pabpc410079.641ENSPPYG00000001506PABPC410079.192Pongo_abelii
ENSHCOG00000012694pabpc410074.551ENSPCAG00000003341PABPC410074.401Procavia_capensis
ENSHCOG00000012694pabpc410082.683ENSPCOG00000023725-10082.188Propithecus_coquereli
ENSHCOG00000012694pabpc48780.000ENSPCOG00000025882-9580.000Propithecus_coquereli
ENSHCOG00000012694pabpc49878.441ENSPVAG00000002187PABPC410077.778Pteropus_vampyrus
ENSHCOG00000012694pabpc410096.172ENSPNYG00000006134pabpc410096.172Pundamilia_nyererei
ENSHCOG00000012694pabpc49992.076ENSPNAG00000024355pabpc410091.125Pygocentrus_nattereri
ENSHCOG00000012694pabpc410080.704ENSRNOG00000015642Pabpc410080.521Rattus_norvegicus
ENSHCOG00000012694pabpc410078.560ENSRNOG00000028592AABR07035074.110078.374Rattus_norvegicus
ENSHCOG00000012694pabpc410082.942ENSRBIG00000039761PABPC410082.316Rhinopithecus_bieti
ENSHCOG00000012694pabpc410082.942ENSRROG00000033355PABPC410082.316Rhinopithecus_roxellana
ENSHCOG00000012694pabpc410082.786ENSSBOG00000026193PABPC410082.160Saimiri_boliviensis_boliviensis
ENSHCOG00000012694pabpc49786.977ENSSHAG00000018139PABPC49985.624Sarcophilus_harrisii
ENSHCOG00000012694pabpc49989.869ENSSFOG00015023514pabpc410089.216Scleropages_formosus
ENSHCOG00000012694pabpc410094.737ENSSMAG00000009007pabpc410093.780Scophthalmus_maximus
ENSHCOG00000012694pabpc49995.793ENSSDUG00000012683pabpc410094.099Seriola_dumerili
ENSHCOG00000012694pabpc49995.793ENSSLDG00000013025pabpc410094.099Seriola_lalandi_dorsalis
ENSHCOG00000012694pabpc410073.054ENSSARG00000000310PABPC410072.904Sorex_araneus
ENSHCOG00000012694pabpc49986.762ENSSPUG00000003204PABPC49986.124Sphenodon_punctatus
ENSHCOG00000012694pabpc49996.440ENSSPAG00000009252pabpc410095.056Stegastes_partitus
ENSHCOG00000012694pabpc48844.565ENSSSCG00000036170-9644.565Sus_scrofa
ENSHCOG00000012694pabpc410082.942ENSSSCG00000003660-10082.316Sus_scrofa
ENSHCOG00000012694pabpc49981.381ENSTGUG00000001266PABPC49981.777Taeniopygia_guttata
ENSHCOG00000012694pabpc410094.099ENSTRUG00000005907pabpc410093.142Takifugu_rubripes
ENSHCOG00000012694pabpc410087.700ENSTNIG00000016902pabpc410087.540Tetraodon_nigroviridis
ENSHCOG00000012694pabpc49969.154ENSTBEG00000009035PABPC410068.491Tupaia_belangeri
ENSHCOG00000012694pabpc49961.509ENSTTRG00000014340PABPC410066.833Tursiops_truncatus
ENSHCOG00000012694pabpc410082.812ENSUAMG00000000303PABPC410082.160Ursus_americanus
ENSHCOG00000012694pabpc410091.084ENSUMAG00000019585PABPC49991.084Ursus_maritimus
ENSHCOG00000012694pabpc46780.000ENSVPAG00000010041PABPC47369.912Vicugna_pacos
ENSHCOG00000012694pabpc410082.812ENSVVUG00000005215PABPC410082.160Vulpes_vulpes
ENSHCOG00000012694pabpc49983.412ENSXETG00000010946pabpc49982.780Xenopus_tropicalis
ENSHCOG00000012694pabpc46896.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSHCOG00000012694pabpc49991.637ENSXCOG00000013190pabpc49694.340Xiphophorus_couchianus
ENSHCOG00000012694pabpc49994.888ENSXMAG00000019007pabpc410093.930Xiphophorus_maculatus

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