EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000012829 (Gene tree)
Gene ID: 109520792
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 17670 bases
Position: chrKV880101.1:245050-262719
Accession: 109520792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000010258	PWI	PF01480.17	3.9e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000016622	-	3698	XM_019878281	ENSHCOP00000010258	829 (aa)	XP_019733840	UPI00094EE6F7

Gene Model

Click here to download ENSHCOG00000012829's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000012829's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000012829	srrm1	57	77.579	ENSAPOG00000001170	srrm1	99	96.154	Acanthochromis_polyacanthus
ENSHCOG00000012829	srrm1	100	76.755	ENSATEG00000007659	srrm1	58	71.146	Anabas_testudineus
ENSHCOG00000012829	srrm1	59	70.420	ENSGACG00000007266	srrm1	65	92.814	Gasterosteus_aculeatus
ENSHCOG00000012829	srrm1	69	73.540	ENSPKIG00000008252	srrm1	62	47.935	Paramormyrops_kingsleyae
ENSHCOG00000012829	srrm1	68	76.923	ENSPLAG00000002058	srrm1	77	96.154	Poecilia_latipinna
ENSHCOG00000012829	srrm1	68	76.923	ENSPLAG00000006807	srrm1	99	96.154	Poecilia_latipinna
ENSHCOG00000012829	srrm1	54	59.959	ENSPMEG00000002603	srrm1	60	63.136	Poecilia_mexicana