EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000013251 (Gene tree)
Gene ID: 109515034
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 8867 bases
Position: chrKV879888.1:1721796-1730662
Accession: 109515034
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000010613	RRM_1	PF00076.22	1.2e-28	1	2
ENSHCOP00000010613	RRM_1	PF00076.22	1.2e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000017078	-	1590	XM_019868589	ENSHCOP00000010613	448 (aa)	XP_019724148	-

Gene Model

Click here to download ENSHCOG00000013251's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000013251's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000013251	pspc1	84	57.181	ENSHCOG00000016441	nono	85	57.447
ENSHCOG00000013251	pspc1	84	55.270	ENSHCOG00000008612	sfpq	65	52.528

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000013251	pspc1	83	70.321	ENSG00000121390	PSPC1	82	74.154	Homo_sapiens
ENSHCOG00000013251	pspc1	99	73.942	ENSAPOG00000015946	pspc1	79	78.795	Acanthochromis_polyacanthus
ENSHCOG00000013251	pspc1	83	70.053	ENSAMEG00000017420	PSPC1	73	70.757	Ailuropoda_melanoleuca
ENSHCOG00000013251	pspc1	99	65.924	ENSACIG00000018695	pspc1	79	67.626	Amphilophus_citrinellus
ENSHCOG00000013251	pspc1	99	73.942	ENSAOCG00000005279	pspc1	79	78.795	Amphiprion_ocellaris
ENSHCOG00000013251	pspc1	99	73.942	ENSAPEG00000015927	pspc1	79	78.795	Amphiprion_percula
ENSHCOG00000013251	pspc1	99	63.956	ENSATEG00000004878	pspc1	80	65.796	Anabas_testudineus
ENSHCOG00000013251	pspc1	76	64.348	ENSAPLG00000003643	SFPQ	66	64.348	Anas_platyrhynchos
ENSHCOG00000013251	pspc1	71	68.634	ENSAPLG00000006246	PSPC1	79	70.552	Anas_platyrhynchos
ENSHCOG00000013251	pspc1	76	61.159	ENSACAG00000013307	-	53	61.159	Anolis_carolinensis
ENSHCOG00000013251	pspc1	85	66.332	ENSACAG00000002093	PSPC1	74	68.342	Anolis_carolinensis
ENSHCOG00000013251	pspc1	92	65.942	ENSANAG00000000059	PSPC1	91	67.039	Aotus_nancymaae
ENSHCOG00000013251	pspc1	99	67.261	ENSACLG00000027220	pspc1	80	69.157	Astatotilapia_calliptera
ENSHCOG00000013251	pspc1	95	63.657	ENSAMXG00000036881	pspc1	77	68.127	Astyanax_mexicanus
ENSHCOG00000013251	pspc1	93	65.796	ENSBTAG00000003934	PSPC1	77	67.633	Bos_taurus
ENSHCOG00000013251	pspc1	92	65.942	ENSCJAG00000004554	PSPC1	79	67.067	Callithrix_jacchus
ENSHCOG00000013251	pspc1	83	70.053	ENSCAFG00020002009	PSPC1	83	74.154	Canis_lupus_dingo
ENSHCOG00000013251	pspc1	93	65.796	ENSCHIG00000016708	PSPC1	77	67.633	Capra_hircus
ENSHCOG00000013251	pspc1	69	63.057	ENSTSYG00000032882	PSPC1	70	60.991	Carlito_syrichta
ENSHCOG00000013251	pspc1	83	70.053	ENSCPOG00000000395	PSPC1	93	69.061	Cavia_porcellus
ENSHCOG00000013251	pspc1	92	65.942	ENSCCAG00000033498	PSPC1	79	67.067	Cebus_capucinus
ENSHCOG00000013251	pspc1	83	71.658	ENSCATG00000036434	PSPC1	90	74.154	Cercocebus_atys
ENSHCOG00000013251	pspc1	70	69.937	ENSCLAG00000005241	PSPC1	76	67.055	Chinchilla_lanigera
ENSHCOG00000013251	pspc1	82	65.952	ENSCHOG00000008913	PSPC1	73	66.580	Choloepus_hoffmanni
ENSHCOG00000013251	pspc1	85	68.586	ENSCPBG00000020859	PSPC1	72	70.419	Chrysemys_picta_bellii
ENSHCOG00000013251	pspc1	65	53.401	ENSCSAVG00000003533	-	54	54.196	Ciona_savignyi
ENSHCOG00000013251	pspc1	59	73.764	ENSCANG00000018948	PSPC1	87	75.665	Colobus_angolensis_palliatus
ENSHCOG00000013251	pspc1	93	66.588	ENSCGRG00001018368	Pspc1	75	67.568	Cricetulus_griseus_chok1gshd
ENSHCOG00000013251	pspc1	93	66.588	ENSCGRG00000011724	Pspc1	75	67.568	Cricetulus_griseus_crigri
ENSHCOG00000013251	pspc1	99	67.261	ENSCVAG00000007679	-	80	72.249	Cyprinodon_variegatus
ENSHCOG00000013251	pspc1	91	67.233	ENSDARG00000006621	pspc1	81	70.154	Danio_rerio
ENSHCOG00000013251	pspc1	82	69.973	ENSDNOG00000011078	PSPC1	77	67.225	Dasypus_novemcinctus
ENSHCOG00000013251	pspc1	93	63.810	ENSDORG00000016050	Pspc1	80	63.357	Dipodomys_ordii
ENSHCOG00000013251	pspc1	86	61.183	ENSEBUG00000003964	-	62	65.797	Eptatretus_burgeri
ENSHCOG00000013251	pspc1	72	42.775	ENSEBUG00000010133	pspc1	82	44.444	Eptatretus_burgeri
ENSHCOG00000013251	pspc1	83	71.277	ENSEASG00005000119	PSPC1	85	73.333	Equus_asinus_asinus
ENSHCOG00000013251	pspc1	83	71.277	ENSECAG00000017286	PSPC1	85	73.333	Equus_caballus
ENSHCOG00000013251	pspc1	58	64.885	ENSEEUG00000011288	-	53	62.191	Erinaceus_europaeus
ENSHCOG00000013251	pspc1	95	63.927	ENSELUG00000003746	pspc1	91	65.885	Esox_lucius
ENSHCOG00000013251	pspc1	83	71.390	ENSFCAG00000027841	PSPC1	83	74.154	Felis_catus
ENSHCOG00000013251	pspc1	85	68.653	ENSFALG00000008750	PSPC1	72	70.466	Ficedula_albicollis
ENSHCOG00000013251	pspc1	92	65.459	ENSFDAG00000002617	PSPC1	78	68.564	Fukomys_damarensis
ENSHCOG00000013251	pspc1	95	59.259	ENSGMOG00000015074	pspc1	80	61.779	Gadus_morhua
ENSHCOG00000013251	pspc1	84	68.947	ENSGALG00000017142	PSPC1	72	70.573	Gallus_gallus
ENSHCOG00000013251	pspc1	88	70.277	ENSGAFG00000006327	pspc1	75	76.309	Gambusia_affinis
ENSHCOG00000013251	pspc1	99	69.507	ENSGACG00000014901	pspc1	98	76.204	Gasterosteus_aculeatus
ENSHCOG00000013251	pspc1	81	61.308	ENSGAGG00000017325	-	60	58.734	Gopherus_agassizii
ENSHCOG00000013251	pspc1	85	68.586	ENSGAGG00000019164	PSPC1	72	70.419	Gopherus_agassizii
ENSHCOG00000013251	pspc1	83	70.321	ENSGGOG00000003414	PSPC1	82	74.154	Gorilla_gorilla
ENSHCOG00000013251	pspc1	99	75.278	ENSHBUG00000001139	pspc1	80	79.759	Haplochromis_burtoni
ENSHCOG00000013251	pspc1	93	66.351	ENSHGLG00000018811	PSPC1	73	70.757	Heterocephalus_glaber_female
ENSHCOG00000013251	pspc1	64	73.958	ENSHGLG00100007962	PSPC1	95	70.645	Heterocephalus_glaber_male
ENSHCOG00000013251	pspc1	99	63.778	ENSIPUG00000013192	pspc1	77	71.182	Ictalurus_punctatus
ENSHCOG00000013251	pspc1	92	65.617	ENSSTOG00000026833	PSPC1	88	70.690	Ictidomys_tridecemlineatus
ENSHCOG00000013251	pspc1	83	69.681	ENSJJAG00000018334	Pspc1	73	70.390	Jaculus_jaculus
ENSHCOG00000013251	pspc1	79	65.193	ENSKMAG00000013525	-	76	69.018	Kryptolebias_marmoratus
ENSHCOG00000013251	pspc1	97	71.818	ENSLBEG00000004474	pspc1	78	77.198	Labrus_bergylta
ENSHCOG00000013251	pspc1	84	66.324	ENSLACG00000010762	PSPC1	74	67.259	Latimeria_chalumnae
ENSHCOG00000013251	pspc1	85	70.707	ENSLOCG00000010832	pspc1	80	71.498	Lepisosteus_oculatus
ENSHCOG00000013251	pspc1	83	70.053	ENSLAFG00000010968	PSPC1	80	66.114	Loxodonta_africana
ENSHCOG00000013251	pspc1	83	71.658	ENSMFAG00000032728	PSPC1	91	74.233	Macaca_fascicularis
ENSHCOG00000013251	pspc1	83	71.658	ENSMMUG00000020262	PSPC1	88	74.154	Macaca_mulatta
ENSHCOG00000013251	pspc1	83	71.658	ENSMNEG00000027401	PSPC1	89	66.430	Macaca_nemestrina
ENSHCOG00000013251	pspc1	69	72.436	ENSMLEG00000039043	PSPC1	75	69.782	Mandrillus_leucophaeus
ENSHCOG00000013251	pspc1	98	74.603	ENSMAMG00000004333	pspc1	78	78.606	Mastacembelus_armatus
ENSHCOG00000013251	pspc1	99	67.261	ENSMZEG00005005726	pspc1	80	69.157	Maylandia_zebra
ENSHCOG00000013251	pspc1	72	68.519	ENSMGAG00000015134	PSPC1	79	70.427	Meleagris_gallopavo
ENSHCOG00000013251	pspc1	93	61.374	ENSMAUG00000021067	Pspc1	84	58.924	Mesocricetus_auratus
ENSHCOG00000013251	pspc1	83	71.390	ENSMICG00000013970	PSPC1	83	74.154	Microcebus_murinus
ENSHCOG00000013251	pspc1	93	64.762	ENSMOCG00000006060	Pspc1	75	67.402	Microtus_ochrogaster
ENSHCOG00000013251	pspc1	64	63.542	ENSMMOG00000004352	pspc1	62	57.303	Mola_mola
ENSHCOG00000013251	pspc1	83	70.321	ENSMODG00000008029	PSPC1	61	71.018	Monodelphis_domestica
ENSHCOG00000013251	pspc1	99	69.933	ENSMALG00000008914	pspc1	81	74.940	Monopterus_albus
ENSHCOG00000013251	pspc1	93	64.608	MGP_CAROLIEiJ_G0019341	Pspc1	82	70.312	Mus_caroli
ENSHCOG00000013251	pspc1	93	64.608	ENSMUSG00000021938	Pspc1	82	70.312	Mus_musculus
ENSHCOG00000013251	pspc1	83	69.600	MGP_PahariEiJ_G0030359	Pspc1	82	70.312	Mus_pahari
ENSHCOG00000013251	pspc1	93	66.033	MGP_SPRETEiJ_G0020232	Pspc1	82	70.312	Mus_spretus
ENSHCOG00000013251	pspc1	83	71.390	ENSMPUG00000013347	PSPC1	73	70.757	Mustela_putorius_furo
ENSHCOG00000013251	pspc1	83	69.393	ENSMLUG00000017663	PSPC1	73	68.557	Myotis_lucifugus
ENSHCOG00000013251	pspc1	83	71.123	ENSNGAG00000011271	Pspc1	73	70.496	Nannospalax_galili
ENSHCOG00000013251	pspc1	88	70.277	ENSNBRG00000014059	pspc1	85	70.652	Neolamprologus_brichardi
ENSHCOG00000013251	pspc1	83	70.321	ENSNLEG00000001294	PSPC1	73	71.018	Nomascus_leucogenys
ENSHCOG00000013251	pspc1	83	58.090	ENSODEG00000007817	-	75	54.369	Octodon_degus
ENSHCOG00000013251	pspc1	81	65.301	ENSODEG00000019012	-	79	61.631	Octodon_degus
ENSHCOG00000013251	pspc1	99	74.833	ENSONIG00000012010	pspc1	80	79.277	Oreochromis_niloticus
ENSHCOG00000013251	pspc1	82	56.216	ENSOANG00000011381	-	76	55.325	Ornithorhynchus_anatinus
ENSHCOG00000013251	pspc1	67	73.026	ENSOANG00000009017	-	79	71.028	Ornithorhynchus_anatinus
ENSHCOG00000013251	pspc1	82	69.837	ENSOCUG00000006153	PSPC1	78	66.829	Oryctolagus_cuniculus
ENSHCOG00000013251	pspc1	96	72.248	ENSORLG00000004232	-	81	72.488	Oryzias_latipes
ENSHCOG00000013251	pspc1	96	71.101	ENSORLG00020000578	PSPC1	81	72.249	Oryzias_latipes_hni
ENSHCOG00000013251	pspc1	99	70.444	ENSORLG00015017480	pspc1	81	72.488	Oryzias_latipes_hsok
ENSHCOG00000013251	pspc1	83	70.053	ENSOGAG00000012643	PSPC1	80	66.194	Otolemur_garnettii
ENSHCOG00000013251	pspc1	82	69.811	ENSOARG00000014163	PSPC1	78	67.895	Ovis_aries
ENSHCOG00000013251	pspc1	83	63.369	ENSPPAG00000009836	PSPC1	92	74.154	Pan_paniscus
ENSHCOG00000013251	pspc1	83	71.390	ENSPPRG00000008833	PSPC1	73	70.757	Panthera_pardus
ENSHCOG00000013251	pspc1	79	65.169	ENSPTIG00000016917	PSPC1	73	63.014	Panthera_tigris_altaica
ENSHCOG00000013251	pspc1	83	71.658	ENSPTRG00000005677	PSPC1	82	74.154	Pan_troglodytes
ENSHCOG00000013251	pspc1	83	71.658	ENSPANG00000001992	PSPC1	89	74.233	Papio_anubis
ENSHCOG00000013251	pspc1	99	64.667	ENSPKIG00000003578	pspc1	73	73.766	Paramormyrops_kingsleyae
ENSHCOG00000013251	pspc1	85	68.063	ENSPSIG00000005168	PSPC1	72	69.895	Pelodiscus_sinensis
ENSHCOG00000013251	pspc1	78	68.750	ENSPMGG00000015135	pspc1	89	73.209	Periophthalmus_magnuspinnatus
ENSHCOG00000013251	pspc1	83	69.786	ENSPEMG00000015214	Pspc1	73	70.496	Peromyscus_maniculatus_bairdii
ENSHCOG00000013251	pspc1	65	41.611	ENSPMAG00000004618	pspc1	89	41.611	Petromyzon_marinus
ENSHCOG00000013251	pspc1	83	70.321	ENSPCIG00000017680	PSPC1	73	71.018	Phascolarctos_cinereus
ENSHCOG00000013251	pspc1	96	72.273	ENSPFOG00000003362	pspc1	82	75.714	Poecilia_formosa
ENSHCOG00000013251	pspc1	99	70.485	ENSPLAG00000011540	pspc1	81	75.714	Poecilia_latipinna
ENSHCOG00000013251	pspc1	99	70.264	ENSPMEG00000008322	pspc1	81	75.476	Poecilia_mexicana
ENSHCOG00000013251	pspc1	96	72.045	ENSPREG00000007786	pspc1	81	75.476	Poecilia_reticulata
ENSHCOG00000013251	pspc1	83	71.658	ENSPPYG00000005186	PSPC1	80	69.452	Pongo_abelii
ENSHCOG00000013251	pspc1	77	69.679	ENSPCOG00000014364	PSPC1	81	63.484	Propithecus_coquereli
ENSHCOG00000013251	pspc1	80	71.309	ENSPVAG00000005036	PSPC1	77	66.908	Pteropus_vampyrus
ENSHCOG00000013251	pspc1	99	67.706	ENSPNYG00000008893	pspc1	80	69.639	Pundamilia_nyererei
ENSHCOG00000013251	pspc1	99	59.692	ENSPNAG00000016511	pspc1	92	64.037	Pygocentrus_nattereri
ENSHCOG00000013251	pspc1	93	64.762	ENSRNOG00000020782	Pspc1	90	65.877	Rattus_norvegicus
ENSHCOG00000013251	pspc1	83	71.658	ENSRBIG00000036057	PSPC1	93	72.892	Rhinopithecus_bieti
ENSHCOG00000013251	pspc1	83	70.321	ENSRROG00000036334	PSPC1	84	72.892	Rhinopithecus_roxellana
ENSHCOG00000013251	pspc1	62	70.397	ENSSBOG00000028172	PSPC1	88	74.349	Saimiri_boliviensis_boliviensis
ENSHCOG00000013251	pspc1	83	64.380	ENSSHAG00000004696	PSPC1	73	60.804	Sarcophilus_harrisii
ENSHCOG00000013251	pspc1	85	72.135	ENSSFOG00015001395	pspc1	82	73.766	Scleropages_formosus
ENSHCOG00000013251	pspc1	99	71.895	ENSSMAG00000001761	pspc1	83	78.338	Scophthalmus_maximus
ENSHCOG00000013251	pspc1	99	74.058	ENSSDUG00000010651	pspc1	82	76.275	Seriola_dumerili
ENSHCOG00000013251	pspc1	99	66.444	ENSSLDG00000004284	pspc1	87	65.275	Seriola_lalandi_dorsalis
ENSHCOG00000013251	pspc1	85	61.832	ENSSARG00000000888	PSPC1	81	57.273	Sorex_araneus
ENSHCOG00000013251	pspc1	73	64.417	ENSSPUG00000008550	PSPC1	71	59.221	Sphenodon_punctatus
ENSHCOG00000013251	pspc1	76	56.812	ENSSPUG00000001136	-	55	54.891	Sphenodon_punctatus
ENSHCOG00000013251	pspc1	99	73.497	ENSSPAG00000001921	pspc1	78	78.313	Stegastes_partitus
ENSHCOG00000013251	pspc1	83	69.786	ENSSSCG00000009569	PSPC1	87	71.143	Sus_scrofa
ENSHCOG00000013251	pspc1	85	68.653	ENSTGUG00000011295	PSPC1	81	70.466	Taeniopygia_guttata
ENSHCOG00000013251	pspc1	99	68.667	ENSTRUG00000011335	pspc1	80	73.735	Takifugu_rubripes
ENSHCOG00000013251	pspc1	97	69.932	ENSTNIG00000010358	pspc1	87	72.771	Tetraodon_nigroviridis
ENSHCOG00000013251	pspc1	77	65.306	ENSTBEG00000002361	PSPC1	67	67.347	Tupaia_belangeri
ENSHCOG00000013251	pspc1	93	65.714	ENSTTRG00000003343	PSPC1	77	67.554	Tursiops_truncatus
ENSHCOG00000013251	pspc1	65	74.048	ENSUAMG00000012309	PSPC1	83	73.958	Ursus_americanus
ENSHCOG00000013251	pspc1	83	71.390	ENSUMAG00000013993	PSPC1	91	74.154	Ursus_maritimus
ENSHCOG00000013251	pspc1	69	72.436	ENSVPAG00000010029	PSPC1	79	71.651	Vicugna_pacos
ENSHCOG00000013251	pspc1	83	70.053	ENSVVUG00000006414	PSPC1	84	74.154	Vulpes_vulpes
ENSHCOG00000013251	pspc1	88	71.537	ENSXCOG00000017438	pspc1	86	77.686	Xiphophorus_couchianus
ENSHCOG00000013251	pspc1	88	71.537	ENSXMAG00000007929	pspc1	86	77.686	Xiphophorus_maculatus