EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000013366 (Gene tree)
Gene ID: 109514972
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 39355 bases
Position: chrKV879888.1:1609607-1648961
Accession: 109514972
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000010669	R3H	PF01424.22	2.7e-12	1	1
ENSHCOP00000024194	R3H	PF01424.22	3.1e-12	1	1
ENSHCOP00000010679	R3H	PF01424.22	3.4e-12	1	1
ENSHCOP00000010685	R3H	PF01424.22	3.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000017192	-	3898	XM_019868460	ENSHCOP00000024194	935 (aa)	XP_019724019	-
ENSHCOT00000017149	-	1359	-	ENSHCOP00000010669	452 (aa)	-	-
ENSHCOT00000026284	-	4009	XM_019868452	ENSHCOP00000010685	972 (aa)	XP_019724011	-
ENSHCOT00000017160	-	4009	-	ENSHCOP00000010679	972 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000013366's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000013366's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000013366	r3hdm1	76	60.377	ENSHCOG00000001142	r3hdm2	70	55.670

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000013366	r3hdm1	91	60.322	ENSG00000048991	R3HDM1	98	59.494	Homo_sapiens
ENSHCOG00000013366	r3hdm1	100	71.329	ENSAPOG00000020850	r3hdm1	96	71.131	Acanthochromis_polyacanthus
ENSHCOG00000013366	r3hdm1	88	59.750	ENSAMEG00000014886	R3HDM1	79	45.094	Ailuropoda_melanoleuca
ENSHCOG00000013366	r3hdm1	93	64.486	ENSACIG00000018791	-	90	67.261	Amphilophus_citrinellus
ENSHCOG00000013366	r3hdm1	100	68.582	ENSAOCG00000005192	r3hdm1	100	68.966	Amphiprion_ocellaris
ENSHCOG00000013366	r3hdm1	100	70.691	ENSAPEG00000016108	r3hdm1	100	71.104	Amphiprion_percula
ENSHCOG00000013366	r3hdm1	100	70.052	ENSATEG00000000232	r3hdm1	100	70.155	Anabas_testudineus
ENSHCOG00000013366	r3hdm1	88	59.250	ENSAPLG00000015231	R3HDM1	80	43.150	Anas_platyrhynchos
ENSHCOG00000013366	r3hdm1	88	58.750	ENSACAG00000001676	R3HDM1	80	44.269	Anolis_carolinensis
ENSHCOG00000013366	r3hdm1	91	60.322	ENSANAG00000035334	R3HDM1	87	59.517	Aotus_nancymaae
ENSHCOG00000013366	r3hdm1	100	70.436	ENSACLG00000027282	r3hdm1	100	70.332	Astatotilapia_calliptera
ENSHCOG00000013366	r3hdm1	86	69.206	ENSAMXG00000012861	R3HDM1	79	68.254	Astyanax_mexicanus
ENSHCOG00000013366	r3hdm1	87	69.304	ENSAMXG00000003536	r3hdm1	77	69.935	Astyanax_mexicanus
ENSHCOG00000013366	r3hdm1	88	59.500	ENSBTAG00000013302	R3HDM1	89	41.806	Bos_taurus
ENSHCOG00000013366	r3hdm1	91	60.054	ENSCJAG00000011718	R3HDM1	87	56.373	Callithrix_jacchus
ENSHCOG00000013366	r3hdm1	88	59.750	ENSCAFG00000005075	R3HDM1	79	44.824	Canis_familiaris
ENSHCOG00000013366	r3hdm1	88	59.750	ENSCAFG00020016119	R3HDM1	73	59.756	Canis_lupus_dingo
ENSHCOG00000013366	r3hdm1	88	59.250	ENSCHIG00000020851	R3HDM1	79	45.021	Capra_hircus
ENSHCOG00000013366	r3hdm1	88	58.500	ENSCPOG00000012784	R3HDM1	84	57.805	Cavia_porcellus
ENSHCOG00000013366	r3hdm1	91	60.322	ENSCCAG00000027199	R3HDM1	87	59.517	Cebus_capucinus
ENSHCOG00000013366	r3hdm1	91	60.054	ENSCATG00000023642	R3HDM1	87	59.249	Cercocebus_atys
ENSHCOG00000013366	r3hdm1	88	60.750	ENSCLAG00000007962	R3HDM1	82	60.732	Chinchilla_lanigera
ENSHCOG00000013366	r3hdm1	88	59.750	ENSCSAG00000016356	R3HDM1	80	44.550	Chlorocebus_sabaeus
ENSHCOG00000013366	r3hdm1	82	69.065	ENSCPBG00000009645	R3HDM1	86	67.986	Chrysemys_picta_bellii
ENSHCOG00000013366	r3hdm1	91	60.322	ENSCANG00000034748	R3HDM1	87	56.373	Colobus_angolensis_palliatus
ENSHCOG00000013366	r3hdm1	88	60.500	ENSCGRG00001012357	R3hdm1	77	44.984	Cricetulus_griseus_chok1gshd
ENSHCOG00000013366	r3hdm1	88	60.500	ENSCGRG00000012080	R3hdm1	84	59.472	Cricetulus_griseus_crigri
ENSHCOG00000013366	r3hdm1	100	59.209	ENSCSEG00000008944	r3hdm1	100	60.481	Cynoglossus_semilaevis
ENSHCOG00000013366	r3hdm1	100	66.002	ENSCVAG00000007582	r3hdm1	100	66.002	Cyprinodon_variegatus
ENSHCOG00000013366	r3hdm1	83	37.435	ENSDARG00000061081	arpp21	71	32.991	Danio_rerio
ENSHCOG00000013366	r3hdm1	88	58.458	ENSDNOG00000000771	R3HDM1	81	43.506	Dasypus_novemcinctus
ENSHCOG00000013366	r3hdm1	87	59.596	ENSETEG00000013606	R3HDM1	79	42.384	Echinops_telfairi
ENSHCOG00000013366	r3hdm1	82	48.363	ENSEBUG00000014746	arpp21	69	44.978	Eptatretus_burgeri
ENSHCOG00000013366	r3hdm1	85	66.883	ENSEASG00005007392	R3HDM1	78	65.909	Equus_asinus_asinus
ENSHCOG00000013366	r3hdm1	85	66.883	ENSECAG00000019114	R3HDM1	78	65.909	Equus_caballus
ENSHCOG00000013366	r3hdm1	89	58.824	ENSELUG00000004909	R3HDM1	86	45.375	Esox_lucius
ENSHCOG00000013366	r3hdm1	81	66.076	ENSELUG00000014413	r3hdm1	83	48.405	Esox_lucius
ENSHCOG00000013366	r3hdm1	85	66.883	ENSFCAG00000027113	R3HDM1	78	65.909	Felis_catus
ENSHCOG00000013366	r3hdm1	88	59.750	ENSFALG00000013731	R3HDM1	63	45.660	Ficedula_albicollis
ENSHCOG00000013366	r3hdm1	88	60.500	ENSFDAG00000016478	R3HDM1	82	60.488	Fukomys_damarensis
ENSHCOG00000013366	r3hdm1	100	64.587	ENSFHEG00000018713	r3hdm1	100	64.779	Fundulus_heteroclitus
ENSHCOG00000013366	r3hdm1	60	75.093	ENSGMOG00000006042	-	71	54.189	Gadus_morhua
ENSHCOG00000013366	r3hdm1	90	57.682	ENSGALG00000012246	R3HDM1	85	62.376	Gallus_gallus
ENSHCOG00000013366	r3hdm1	100	65.464	ENSGAFG00000006203	r3hdm1	100	66.289	Gambusia_affinis
ENSHCOG00000013366	r3hdm1	95	67.954	ENSGACG00000014925	r3hdm1	93	68.058	Gasterosteus_aculeatus
ENSHCOG00000013366	r3hdm1	85	64.839	ENSGAGG00000007840	R3HDM1	75	63.871	Gopherus_agassizii
ENSHCOG00000013366	r3hdm1	91	60.322	ENSGGOG00000008156	R3HDM1	87	59.517	Gorilla_gorilla
ENSHCOG00000013366	r3hdm1	88	75.430	ENSHBUG00000015737	R3HDM1	96	69.145	Haplochromis_burtoni
ENSHCOG00000013366	r3hdm1	88	60.250	ENSHGLG00000015718	R3HDM1	82	60.244	Heterocephalus_glaber_female
ENSHCOG00000013366	r3hdm1	88	60.250	ENSHGLG00100003184	-	82	60.244	Heterocephalus_glaber_male
ENSHCOG00000013366	r3hdm1	99	36.478	ENSHGLG00100015374	-	91	36.392	Heterocephalus_glaber_male
ENSHCOG00000013366	r3hdm1	88	62.275	ENSIPUG00000013629	r3hdm1	86	60.641	Ictalurus_punctatus
ENSHCOG00000013366	r3hdm1	86	67.925	ENSIPUG00000001676	R3HDM1	90	66.981	Ictalurus_punctatus
ENSHCOG00000013366	r3hdm1	88	59.500	ENSSTOG00000007572	R3HDM1	82	59.512	Ictidomys_tridecemlineatus
ENSHCOG00000013366	r3hdm1	63	79.310	ENSKMAG00000013373	-	91	79.310	Kryptolebias_marmoratus
ENSHCOG00000013366	r3hdm1	88	75.186	ENSLBEG00000027981	-	99	73.614	Labrus_bergylta
ENSHCOG00000013366	r3hdm1	88	60.396	ENSLACG00000005334	R3HDM1	83	45.791	Latimeria_chalumnae
ENSHCOG00000013366	r3hdm1	87	61.750	ENSLOCG00000001641	r3hdm1	80	47.954	Lepisosteus_oculatus
ENSHCOG00000013366	r3hdm1	85	66.667	ENSLAFG00000009065	R3HDM1	81	65.696	Loxodonta_africana
ENSHCOG00000013366	r3hdm1	85	67.208	ENSMFAG00000030331	R3HDM1	87	59.517	Macaca_fascicularis
ENSHCOG00000013366	r3hdm1	91	60.322	ENSMMUG00000009844	R3HDM1	87	59.517	Macaca_mulatta
ENSHCOG00000013366	r3hdm1	85	67.208	ENSMNEG00000027793	R3HDM1	87	59.517	Macaca_nemestrina
ENSHCOG00000013366	r3hdm1	91	60.322	ENSMLEG00000043189	R3HDM1	87	59.517	Mandrillus_leucophaeus
ENSHCOG00000013366	r3hdm1	100	70.010	ENSMAMG00000004532	r3hdm1	100	70.010	Mastacembelus_armatus
ENSHCOG00000013366	r3hdm1	100	69.742	ENSMZEG00005003157	r3hdm1	100	69.940	Maylandia_zebra
ENSHCOG00000013366	r3hdm1	87	59.494	ENSMGAG00000012461	R3HDM1	78	43.282	Meleagris_gallopavo
ENSHCOG00000013366	r3hdm1	88	60.500	ENSMAUG00000010315	R3hdm1	84	59.472	Mesocricetus_auratus
ENSHCOG00000013366	r3hdm1	91	60.108	ENSMICG00000005900	-	87	59.299	Microcebus_murinus
ENSHCOG00000013366	r3hdm1	91	59.838	ENSMICG00000042655	-	92	59.030	Microcebus_murinus
ENSHCOG00000013366	r3hdm1	88	60.000	ENSMOCG00000019833	-	82	60.000	Microtus_ochrogaster
ENSHCOG00000013366	r3hdm1	88	57.946	ENSMODG00000000923	R3HDM1	86	43.679	Monodelphis_domestica
ENSHCOG00000013366	r3hdm1	100	67.170	ENSMALG00000009000	r3hdm1	90	67.053	Monopterus_albus
ENSHCOG00000013366	r3hdm1	88	60.000	MGP_CAROLIEiJ_G0014543	R3hdm1	100	59.751	Mus_caroli
ENSHCOG00000013366	r3hdm1	88	60.000	ENSMUSG00000056211	R3hdm1	100	59.751	Mus_musculus
ENSHCOG00000013366	r3hdm1	88	60.000	MGP_PahariEiJ_G0027779	R3hdm1	100	59.751	Mus_pahari
ENSHCOG00000013366	r3hdm1	88	60.000	MGP_SPRETEiJ_G0015350	R3hdm1	100	59.751	Mus_spretus
ENSHCOG00000013366	r3hdm1	88	59.750	ENSMPUG00000002412	R3HDM1	79	45.154	Mustela_putorius_furo
ENSHCOG00000013366	r3hdm1	88	59.750	ENSMLUG00000013824	R3HDM1	79	44.956	Myotis_lucifugus
ENSHCOG00000013366	r3hdm1	91	60.590	ENSNLEG00000008622	R3HDM1	87	59.786	Nomascus_leucogenys
ENSHCOG00000013366	r3hdm1	88	45.750	ENSMEUG00000011784	R3HDM1	91	35.345	Notamacropus_eugenii
ENSHCOG00000013366	r3hdm1	88	60.000	ENSODEG00000008607	R3HDM1	82	60.000	Octodon_degus
ENSHCOG00000013366	r3hdm1	95	70.000	ENSONIG00000012017	r3hdm1	85	69.892	Oreochromis_niloticus
ENSHCOG00000013366	r3hdm1	87	58.987	ENSOANG00000007987	R3HDM1	79	44.178	Ornithorhynchus_anatinus
ENSHCOG00000013366	r3hdm1	88	59.500	ENSOCUG00000017366	R3HDM1	87	44.035	Oryctolagus_cuniculus
ENSHCOG00000013366	r3hdm1	100	62.578	ENSORLG00000004297	r3hdm1	100	62.578	Oryzias_latipes
ENSHCOG00000013366	r3hdm1	70	75.385	ENSORLG00020019252	-	92	73.481	Oryzias_latipes_hni
ENSHCOG00000013366	r3hdm1	100	62.539	ENSORLG00015017355	r3hdm1	100	60.992	Oryzias_latipes_hsok
ENSHCOG00000013366	r3hdm1	89	73.544	ENSOMEG00000003882	-	100	65.370	Oryzias_melastigma
ENSHCOG00000013366	r3hdm1	88	60.000	ENSOGAG00000003136	R3HDM1	79	44.994	Otolemur_garnettii
ENSHCOG00000013366	r3hdm1	88	59.250	ENSOARG00000010788	R3HDM1	79	45.094	Ovis_aries
ENSHCOG00000013366	r3hdm1	91	60.322	ENSPPAG00000027858	R3HDM1	87	59.517	Pan_paniscus
ENSHCOG00000013366	r3hdm1	91	60.108	ENSPPRG00000002626	R3HDM1	87	59.299	Panthera_pardus
ENSHCOG00000013366	r3hdm1	91	59.838	ENSPTIG00000016581	R3HDM1	87	59.030	Panthera_tigris_altaica
ENSHCOG00000013366	r3hdm1	91	60.322	ENSPTRG00000012494	R3HDM1	87	59.517	Pan_troglodytes
ENSHCOG00000013366	r3hdm1	91	60.322	ENSPANG00000026448	R3HDM1	87	59.517	Papio_anubis
ENSHCOG00000013366	r3hdm1	86	60.102	ENSPKIG00000011224	R3HDM1	99	52.907	Paramormyrops_kingsleyae
ENSHCOG00000013366	r3hdm1	85	69.536	ENSPKIG00000004328	r3hdm1	82	61.648	Paramormyrops_kingsleyae
ENSHCOG00000013366	r3hdm1	88	59.250	ENSPSIG00000012915	R3HDM1	79	44.079	Pelodiscus_sinensis
ENSHCOG00000013366	r3hdm1	85	65.816	ENSPMGG00000011264	-	93	65.011	Periophthalmus_magnuspinnatus
ENSHCOG00000013366	r3hdm1	88	60.750	ENSPEMG00000015187	R3hdm1	84	59.952	Peromyscus_maniculatus_bairdii
ENSHCOG00000013366	r3hdm1	86	53.056	ENSPMAG00000003369	-	89	37.866	Petromyzon_marinus
ENSHCOG00000013366	r3hdm1	85	65.909	ENSPCIG00000002491	R3HDM1	78	64.935	Phascolarctos_cinereus
ENSHCOG00000013366	r3hdm1	100	63.454	ENSPFOG00000015036	r3hdm1	100	63.454	Poecilia_formosa
ENSHCOG00000013366	r3hdm1	100	65.428	ENSPLAG00000018042	r3hdm1	100	65.428	Poecilia_latipinna
ENSHCOG00000013366	r3hdm1	100	65.464	ENSPMEG00000023947	r3hdm1	100	65.464	Poecilia_mexicana
ENSHCOG00000013366	r3hdm1	100	65.253	ENSPREG00000007902	r3hdm1	100	65.564	Poecilia_reticulata
ENSHCOG00000013366	r3hdm1	88	58.354	ENSPPYG00000012815	R3HDM1	79	44.372	Pongo_abelii
ENSHCOG00000013366	r3hdm1	79	66.968	ENSPCAG00000006208	R3HDM1	63	66.968	Procavia_capensis
ENSHCOG00000013366	r3hdm1	91	59.677	ENSPCOG00000012698	R3HDM1	87	58.871	Propithecus_coquereli
ENSHCOG00000013366	r3hdm1	88	53.750	ENSPVAG00000006098	R3HDM1	79	39.625	Pteropus_vampyrus
ENSHCOG00000013366	r3hdm1	70	78.370	ENSPNYG00000008701	-	98	71.139	Pundamilia_nyererei
ENSHCOG00000013366	r3hdm1	86	67.722	ENSPNAG00000005436	R3HDM1	87	68.301	Pygocentrus_nattereri
ENSHCOG00000013366	r3hdm1	84	69.304	ENSPNAG00000013952	r3hdm1	77	69.935	Pygocentrus_nattereri
ENSHCOG00000013366	r3hdm1	88	60.250	ENSRNOG00000004099	R3hdm1	79	43.887	Rattus_norvegicus
ENSHCOG00000013366	r3hdm1	82	70.863	ENSRBIG00000033317	R3HDM1	86	69.784	Rhinopithecus_bieti
ENSHCOG00000013366	r3hdm1	91	60.322	ENSRROG00000034534	R3HDM1	87	59.517	Rhinopithecus_roxellana
ENSHCOG00000013366	r3hdm1	88	60.000	ENSSBOG00000020389	R3HDM1	84	58.760	Saimiri_boliviensis_boliviensis
ENSHCOG00000013366	r3hdm1	88	59.500	ENSSHAG00000016999	R3HDM1	88	43.532	Sarcophilus_harrisii
ENSHCOG00000013366	r3hdm1	84	72.759	ENSSFOG00015014134	r3hdm1	77	71.724	Scleropages_formosus
ENSHCOG00000013366	r3hdm1	87	58.780	ENSSFOG00015019851	-	91	53.831	Scleropages_formosus
ENSHCOG00000013366	r3hdm1	100	67.109	ENSSMAG00000001669	r3hdm1	90	66.871	Scophthalmus_maximus
ENSHCOG00000013366	r3hdm1	100	69.929	ENSSDUG00000010749	r3hdm1	100	70.133	Seriola_dumerili
ENSHCOG00000013366	r3hdm1	100	68.849	ENSSLDG00000004499	r3hdm1	90	68.948	Seriola_lalandi_dorsalis
ENSHCOG00000013366	r3hdm1	88	58.105	ENSSPUG00000004167	R3HDM1	79	43.279	Sphenodon_punctatus
ENSHCOG00000013366	r3hdm1	100	70.143	ENSSPAG00000004648	r3hdm1	100	70.245	Stegastes_partitus
ENSHCOG00000013366	r3hdm1	91	57.880	ENSSSCG00000015692	R3HDM1	87	57.065	Sus_scrofa
ENSHCOG00000013366	r3hdm1	88	59.901	ENSTGUG00000011750	R3HDM1	79	43.249	Taeniopygia_guttata
ENSHCOG00000013366	r3hdm1	100	64.868	ENSTRUG00000011654	r3hdm1	99	64.868	Takifugu_rubripes
ENSHCOG00000013366	r3hdm1	88	73.123	ENSTNIG00000010362	r3hdm1	91	61.957	Tetraodon_nigroviridis
ENSHCOG00000013366	r3hdm1	89	59.069	ENSTTRG00000003935	R3HDM1	66	47.128	Tursiops_truncatus
ENSHCOG00000013366	r3hdm1	88	59.750	ENSUAMG00000024806	R3HDM1	93	59.030	Ursus_americanus
ENSHCOG00000013366	r3hdm1	91	59.838	ENSUMAG00000005552	R3HDM1	87	59.030	Ursus_maritimus
ENSHCOG00000013366	r3hdm1	81	59.569	ENSVPAG00000007333	R3HDM1	73	45.024	Vicugna_pacos
ENSHCOG00000013366	r3hdm1	91	59.838	ENSVVUG00000006457	R3HDM1	87	59.030	Vulpes_vulpes
ENSHCOG00000013366	r3hdm1	87	58.911	ENSXETG00000019330	r3hdm1	87	42.591	Xenopus_tropicalis
ENSHCOG00000013366	r3hdm1	89	71.707	ENSXCOG00000017448	r3hdm1	91	64.865	Xiphophorus_couchianus
ENSHCOG00000013366	r3hdm1	100	65.186	ENSXMAG00000007885	r3hdm1	100	63.732	Xiphophorus_maculatus