EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000013468 (Gene tree)
Gene ID: 109524670
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 8035 bases
Position: chrKV880228.1:109784-117818
Accession: 109524670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000010801	MMR_HSR1	PF01926.23	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000026327	-	2966	XM_019884676	ENSHCOP00000010801	259 (aa)	XP_019740235	UPI00094ED3BA

Gene Model

Click here to download ENSHCOG00000013468's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000013468's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000013468	rab20	59	31.481	ENSHCOG00000009133	zgc:101559	67	31.481
ENSHCOG00000013468	rab20	53	34.965	ENSHCOG00000000232	rab11al	64	34.965
ENSHCOG00000013468	rab20	51	34.752	ENSHCOG00000005802	RAB9A	64	34.752
ENSHCOG00000013468	rab20	51	36.429	ENSHCOG00000020527	rab34a	52	36.429
ENSHCOG00000013468	rab20	62	32.787	ENSHCOG00000013095	rab25a	87	32.787
ENSHCOG00000013468	rab20	52	33.557	ENSHCOG00000010707	rab30	80	33.557

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000013468	rab20	98	81.783	ENSATEG00000011117	rab20	100	81.783	Anabas_testudineus
ENSHCOG00000013468	rab20	98	59.289	ENSAPLG00000011744	RAB20	99	59.289	Anas_platyrhynchos
ENSHCOG00000013468	rab20	97	58.566	ENSACAG00000014045	RAB20	99	58.566	Anolis_carolinensis
ENSHCOG00000013468	rab20	98	65.625	ENSAMXG00000003504	rab20	99	64.822	Astyanax_mexicanus
ENSHCOG00000013468	rab20	97	61.753	ENSCPBG00000005866	RAB20	99	61.753	Chrysemys_picta_bellii
ENSHCOG00000013468	rab20	98	75.889	ENSCSEG00000011160	rab20	100	75.889	Cynoglossus_semilaevis
ENSHCOG00000013468	rab20	100	71.538	ENSDARG00000005049	rab20	99	71.538	Danio_rerio
ENSHCOG00000013468	rab20	99	77.186	ENSELUG00000004092	rab20	100	77.186	Esox_lucius
ENSHCOG00000013468	rab20	98	59.684	ENSFALG00000004409	RAB20	99	59.684	Ficedula_albicollis
ENSHCOG00000013468	rab20	98	82.745	ENSGACG00000003527	rab20	100	82.745	Gasterosteus_aculeatus
ENSHCOG00000013468	rab20	100	68.077	ENSIPUG00000000432	RAB20	99	67.816	Ictalurus_punctatus
ENSHCOG00000013468	rab20	100	68.077	ENSIPUG00000018288	RAB20	99	67.816	Ictalurus_punctatus
ENSHCOG00000013468	rab20	97	61.508	ENSLACG00000011001	RAB20	99	61.508	Latimeria_chalumnae
ENSHCOG00000013468	rab20	100	82.824	ENSMAMG00000015214	rab20	100	82.824	Mastacembelus_armatus
ENSHCOG00000013468	rab20	98	76.680	ENSMMOG00000020022	rab20	100	76.680	Mola_mola
ENSHCOG00000013468	rab20	98	58.498	ENSMEUG00000009442	RAB20	99	58.498	Notamacropus_eugenii
ENSHCOG00000013468	rab20	84	48.458	ENSPMAG00000004439	rab20	98	50.435	Petromyzon_marinus
ENSHCOG00000013468	rab20	98	67.589	ENSPNAG00000008867	rab20	99	68.775	Pygocentrus_nattereri
ENSHCOG00000013468	rab20	98	81.569	ENSSMAG00000018818	rab20	100	81.569	Scophthalmus_maximus
ENSHCOG00000013468	rab20	100	81.749	ENSSDUG00000005148	rab20	100	81.749	Seriola_dumerili
ENSHCOG00000013468	rab20	98	59.289	ENSTGUG00000008797	RAB20	99	59.289	Taeniopygia_guttata
ENSHCOG00000013468	rab20	100	77.567	ENSTRUG00000022951	rab20	100	77.567	Takifugu_rubripes
ENSHCOG00000013468	rab20	93	74.167	ENSTNIG00000013920	rab20	100	73.123	Tetraodon_nigroviridis