EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000013481 (Gene tree)
Gene ID
109510258
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
1320 bases
Position
chrKV880529.1:213168-214487
Accession
109510258
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000024279LSMPF01423.222.9e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000017330-309XM_019860442ENSHCOP00000024279102 (aa)XP_019716001UPI00094E1BEB
Gene Model
Click here to download ENSHCOG00000013481's gene model file
Pathways
Pathway IDPathway NameSource
hcq03018RNA degradationKEGG
hcq03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000013481's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000013481lsm37732.927ENSHCOG00000010973snrpd26932.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000013481lsm310094.118ENSG00000170860LSM310094.118Homo_sapiens
ENSHCOG00000013481lsm310099.020ENSAPOG00000018947lsm310099.020Acanthochromis_polyacanthus
ENSHCOG00000013481lsm310094.118ENSAMEG00000009405LSM310094.118Ailuropoda_melanoleuca
ENSHCOG00000013481lsm310099.020ENSACIG00000004574lsm37199.020Amphilophus_citrinellus
ENSHCOG00000013481lsm310099.020ENSAOCG00000007658lsm310099.020Amphiprion_ocellaris
ENSHCOG00000013481lsm310099.020ENSAPEG00000018621lsm310099.020Amphiprion_percula
ENSHCOG00000013481lsm310099.020ENSATEG00000005153lsm310099.020Anabas_testudineus
ENSHCOG00000013481lsm39395.789ENSAPLG00000014499LSM310095.789Anas_platyrhynchos
ENSHCOG00000013481lsm310095.098ENSACAG00000013503LSM310095.098Anolis_carolinensis
ENSHCOG00000013481lsm310094.118ENSANAG00000034627LSM310094.118Aotus_nancymaae
ENSHCOG00000013481lsm310090.196ENSANAG00000002903-10090.196Aotus_nancymaae
ENSHCOG00000013481lsm39598.969ENSACLG00000001726-9498.969Astatotilapia_calliptera
ENSHCOG00000013481lsm310097.059ENSAMXG00000041214lsm310097.059Astyanax_mexicanus
ENSHCOG00000013481lsm39495.833ENSBTAG00000007363LSM310095.833Bos_taurus
ENSHCOG00000013481lsm310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSHCOG00000013481lsm310092.157ENSCAFG00000001760LSM310092.157Canis_familiaris
ENSHCOG00000013481lsm310092.157ENSCAFG00020021584-10092.157Canis_lupus_dingo
ENSHCOG00000013481lsm310092.157ENSCAFG00020017266-10092.157Canis_lupus_dingo
ENSHCOG00000013481lsm310085.294ENSCAFG00020016680-10085.294Canis_lupus_dingo
ENSHCOG00000013481lsm310091.176ENSCAFG00020026452-10091.176Canis_lupus_dingo
ENSHCOG00000013481lsm310084.112ENSCAFG00020020950-10084.112Canis_lupus_dingo
ENSHCOG00000013481lsm310094.118ENSCHIG00000024650LSM310094.118Capra_hircus
ENSHCOG00000013481lsm310095.098ENSTSYG00000005204-10095.098Carlito_syrichta
ENSHCOG00000013481lsm39976.238ENSTSYG00000028528-9976.238Carlito_syrichta
ENSHCOG00000013481lsm39495.833ENSCAPG00000015760LSM310095.833Cavia_aperea
ENSHCOG00000013481lsm310094.118ENSCPOG00000034071LSM310094.118Cavia_porcellus
ENSHCOG00000013481lsm310074.510ENSCCAG00000032763-10074.510Cebus_capucinus
ENSHCOG00000013481lsm310094.118ENSCCAG00000019503-10094.118Cebus_capucinus
ENSHCOG00000013481lsm310094.118ENSCCAG00000036499-10094.118Cebus_capucinus
ENSHCOG00000013481lsm39974.257ENSCATG00000031630-9974.257Cercocebus_atys
ENSHCOG00000013481lsm310094.118ENSCATG00000039421LSM310094.118Cercocebus_atys
ENSHCOG00000013481lsm310094.118ENSCLAG00000015997LSM310094.118Chinchilla_lanigera
ENSHCOG00000013481lsm310089.216ENSCSAG00000019525-10089.216Chlorocebus_sabaeus
ENSHCOG00000013481lsm310095.098ENSCPBG00000014531LSM310095.098Chrysemys_picta_bellii
ENSHCOG00000013481lsm310081.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSHCOG00000013481lsm310092.157ENSCANG00000018782-10092.157Colobus_angolensis_palliatus
ENSHCOG00000013481lsm310091.176ENSCANG00000038037-10091.176Colobus_angolensis_palliatus
ENSHCOG00000013481lsm310094.118ENSCANG00000033944-10094.118Colobus_angolensis_palliatus
ENSHCOG00000013481lsm310094.118ENSCGRG00001017598Lsm310094.118Cricetulus_griseus_chok1gshd
ENSHCOG00000013481lsm39879.000ENSCGRG00001011396-10079.000Cricetulus_griseus_chok1gshd
ENSHCOG00000013481lsm310070.874ENSCGRG00001008639-10070.874Cricetulus_griseus_chok1gshd
ENSHCOG00000013481lsm310094.118ENSCGRG00000016159Lsm310094.118Cricetulus_griseus_crigri
ENSHCOG00000013481lsm39381.053ENSCGRG00000012129-10081.053Cricetulus_griseus_crigri
ENSHCOG00000013481lsm310099.020ENSCSEG00000015071lsm37799.020Cynoglossus_semilaevis
ENSHCOG00000013481lsm310098.039ENSCVAG00000006933lsm310098.039Cyprinodon_variegatus
ENSHCOG00000013481lsm310095.098ENSDARG00000089663lsm310095.098Danio_rerio
ENSHCOG00000013481lsm310094.118ENSDNOG00000030808LSM310094.118Dasypus_novemcinctus
ENSHCOG00000013481lsm310074.510ENSDORG00000024490-10074.510Dipodomys_ordii
ENSHCOG00000013481lsm310094.118ENSDORG00000006894-10094.118Dipodomys_ordii
ENSHCOG00000013481lsm310078.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSHCOG00000013481lsm310094.118ENSETEG00000016207LSM310094.118Echinops_telfairi
ENSHCOG00000013481lsm310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSHCOG00000013481lsm310094.118ENSEASG00005015443LSM310094.118Equus_asinus_asinus
ENSHCOG00000013481lsm310094.118ENSECAG00000007803LSM310094.118Equus_caballus
ENSHCOG00000013481lsm310097.059ENSELUG00000018922lsm310097.059Esox_lucius
ENSHCOG00000013481lsm310094.118ENSFCAG00000038453LSM310094.118Felis_catus
ENSHCOG00000013481lsm310071.569ENSFCAG00000044344-10071.569Felis_catus
ENSHCOG00000013481lsm310095.098ENSFALG00000012644LSM310095.098Ficedula_albicollis
ENSHCOG00000013481lsm310094.118ENSFDAG00000011470LSM310094.118Fukomys_damarensis
ENSHCOG00000013481lsm310099.020ENSFHEG00000000876lsm310099.020Fundulus_heteroclitus
ENSHCOG00000013481lsm39396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSHCOG00000013481lsm310099.020ENSGAFG00000013965lsm310099.020Gambusia_affinis
ENSHCOG00000013481lsm310099.020ENSGACG00000003488lsm310099.020Gasterosteus_aculeatus
ENSHCOG00000013481lsm310095.098ENSGAGG00000025707LSM310095.098Gopherus_agassizii
ENSHCOG00000013481lsm310094.118ENSGGOG00000010006LSM310094.118Gorilla_gorilla
ENSHCOG00000013481lsm310099.020ENSHBUG00000022399lsm310099.020Haplochromis_burtoni
ENSHCOG00000013481lsm310074.510ENSHGLG00000015564-10074.510Heterocephalus_glaber_female
ENSHCOG00000013481lsm310094.118ENSHGLG00000000651LSM310094.118Heterocephalus_glaber_female
ENSHCOG00000013481lsm310074.510ENSHGLG00100010658-10074.510Heterocephalus_glaber_male
ENSHCOG00000013481lsm310094.118ENSHGLG00100011343LSM310094.118Heterocephalus_glaber_male
ENSHCOG00000013481lsm310097.059ENSIPUG00000009207lsm310097.059Ictalurus_punctatus
ENSHCOG00000013481lsm310094.118ENSSTOG00000006842LSM310094.118Ictidomys_tridecemlineatus
ENSHCOG00000013481lsm39971.569ENSJJAG00000018311-10071.569Jaculus_jaculus
ENSHCOG00000013481lsm310094.118ENSJJAG00000017351Lsm310094.118Jaculus_jaculus
ENSHCOG00000013481lsm310086.275ENSJJAG00000012797-10086.275Jaculus_jaculus
ENSHCOG00000013481lsm310099.020ENSKMAG00000015182lsm310099.020Kryptolebias_marmoratus
ENSHCOG00000013481lsm39696.939ENSLBEG00000021292lsm310096.939Labrus_bergylta
ENSHCOG00000013481lsm310095.098ENSLOCG00000013560lsm310095.098Lepisosteus_oculatus
ENSHCOG00000013481lsm310093.204ENSLAFG00000023308LSM310093.204Loxodonta_africana
ENSHCOG00000013481lsm310094.118ENSMFAG00000003185LSM310094.118Macaca_fascicularis
ENSHCOG00000013481lsm310094.118ENSMMUG00000023126LSM310094.118Macaca_mulatta
ENSHCOG00000013481lsm39674.490ENSMMUG00000002294-9574.490Macaca_mulatta
ENSHCOG00000013481lsm310071.569ENSMMUG00000043596-10071.569Macaca_mulatta
ENSHCOG00000013481lsm39976.238ENSMNEG00000037686-9976.238Macaca_nemestrina
ENSHCOG00000013481lsm310094.118ENSMNEG00000043632LSM310094.118Macaca_nemestrina
ENSHCOG00000013481lsm310094.118ENSMLEG00000036162LSM310094.118Mandrillus_leucophaeus
ENSHCOG00000013481lsm310099.020ENSMAMG00000012807lsm310099.020Mastacembelus_armatus
ENSHCOG00000013481lsm310099.020ENSMZEG00005016682lsm37399.020Maylandia_zebra
ENSHCOG00000013481lsm39495.833ENSMGAG00000007776LSM310095.833Meleagris_gallopavo
ENSHCOG00000013481lsm310093.137ENSMICG00000032361-10093.137Microcebus_murinus
ENSHCOG00000013481lsm310080.392ENSMICG00000027821-10080.392Microcebus_murinus
ENSHCOG00000013481lsm310094.118ENSMOCG00000014269Lsm310094.118Microtus_ochrogaster
ENSHCOG00000013481lsm310099.020ENSMMOG00000020715lsm310099.020Mola_mola
ENSHCOG00000013481lsm310093.137ENSMODG00000007275LSM310093.137Monodelphis_domestica
ENSHCOG00000013481lsm310099.020ENSMALG00000006485lsm310099.020Monopterus_albus
ENSHCOG00000013481lsm310094.118ENSMUSG00000034192Lsm310094.118Mus_musculus
ENSHCOG00000013481lsm310094.118MGP_PahariEiJ_G0022402Lsm310094.118Mus_pahari
ENSHCOG00000013481lsm310094.118MGP_SPRETEiJ_G0029681Lsm310094.118Mus_spretus
ENSHCOG00000013481lsm39783.838ENSMPUG00000019120-9783.838Mustela_putorius_furo
ENSHCOG00000013481lsm38385.882ENSMPUG00000017256-10085.882Mustela_putorius_furo
ENSHCOG00000013481lsm310089.216ENSMLUG00000024700-10089.216Myotis_lucifugus
ENSHCOG00000013481lsm310094.118ENSMLUG00000010677LSM310094.118Myotis_lucifugus
ENSHCOG00000013481lsm39978.218ENSNGAG00000010207-9978.218Nannospalax_galili
ENSHCOG00000013481lsm310070.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSHCOG00000013481lsm310094.118ENSNGAG00000022450Lsm310094.118Nannospalax_galili
ENSHCOG00000013481lsm310099.020ENSNBRG00000014318lsm310099.020Neolamprologus_brichardi
ENSHCOG00000013481lsm310094.118ENSNLEG00000005079LSM310094.118Nomascus_leucogenys
ENSHCOG00000013481lsm310085.294ENSNLEG00000030229-10085.294Nomascus_leucogenys
ENSHCOG00000013481lsm310092.157ENSODEG00000019158-10092.157Octodon_degus
ENSHCOG00000013481lsm310087.255ENSODEG00000019403-10087.255Octodon_degus
ENSHCOG00000013481lsm310094.118ENSODEG00000001726LSM310094.118Octodon_degus
ENSHCOG00000013481lsm310093.137ENSODEG00000019740-10093.137Octodon_degus
ENSHCOG00000013481lsm310099.020ENSONIG00000000370lsm310099.020Oreochromis_niloticus
ENSHCOG00000013481lsm310099.020ENSONIG00000021369-10099.020Oreochromis_niloticus
ENSHCOG00000013481lsm310093.137ENSOANG00000012273LSM310093.137Ornithorhynchus_anatinus
ENSHCOG00000013481lsm310094.118ENSOCUG00000027653-10094.118Oryctolagus_cuniculus
ENSHCOG00000013481lsm310091.176ENSOCUG00000011088-10091.176Oryctolagus_cuniculus
ENSHCOG00000013481lsm310099.020ENSORLG00000025900lsm310099.020Oryzias_latipes
ENSHCOG00000013481lsm310099.020ENSORLG00020007125lsm310099.020Oryzias_latipes_hni
ENSHCOG00000013481lsm310099.020ENSORLG00015002944lsm310099.020Oryzias_latipes_hsok
ENSHCOG00000013481lsm310099.020ENSOMEG00000001915lsm310099.020Oryzias_melastigma
ENSHCOG00000013481lsm310094.118ENSOGAG00000007659-10094.118Otolemur_garnettii
ENSHCOG00000013481lsm310085.294ENSOGAG00000033051-10085.294Otolemur_garnettii
ENSHCOG00000013481lsm39692.857ENSOGAG00000028858-10092.857Otolemur_garnettii
ENSHCOG00000013481lsm310093.204ENSOARG00000000600LSM310093.204Ovis_aries
ENSHCOG00000013481lsm310094.118ENSPPAG00000034074LSM310094.118Pan_paniscus
ENSHCOG00000013481lsm39987.129ENSPPRG00000010610-8987.129Panthera_pardus
ENSHCOG00000013481lsm310094.118ENSPPRG00000012912-10094.118Panthera_pardus
ENSHCOG00000013481lsm310093.137ENSPPRG00000020953-10093.137Panthera_pardus
ENSHCOG00000013481lsm310094.118ENSPTIG00000013072-10094.118Panthera_tigris_altaica
ENSHCOG00000013481lsm310094.118ENSPTIG00000003463-10094.118Panthera_tigris_altaica
ENSHCOG00000013481lsm310094.118ENSPTRG00000014650LSM310094.118Pan_troglodytes
ENSHCOG00000013481lsm310094.118ENSPANG00000009378LSM310094.118Papio_anubis
ENSHCOG00000013481lsm310072.549ENSPANG00000032192-10072.549Papio_anubis
ENSHCOG00000013481lsm310096.078ENSPKIG00000008037lsm39196.078Paramormyrops_kingsleyae
ENSHCOG00000013481lsm310095.098ENSPSIG00000015720LSM310095.098Pelodiscus_sinensis
ENSHCOG00000013481lsm39594.845ENSPMGG00000012103lsm39894.845Periophthalmus_magnuspinnatus
ENSHCOG00000013481lsm310078.431ENSPEMG00000020213-10078.431Peromyscus_maniculatus_bairdii
ENSHCOG00000013481lsm310094.118ENSPEMG00000015797Lsm310094.118Peromyscus_maniculatus_bairdii
ENSHCOG00000013481lsm310099.020ENSPFOG00000008372lsm310099.020Poecilia_formosa
ENSHCOG00000013481lsm310099.020ENSPLAG00000000563lsm310099.020Poecilia_latipinna
ENSHCOG00000013481lsm310099.020ENSPMEG00000022052lsm310099.020Poecilia_mexicana
ENSHCOG00000013481lsm310099.020ENSPREG00000022485lsm310099.020Poecilia_reticulata
ENSHCOG00000013481lsm310094.118ENSPPYG00000013402LSM310094.118Pongo_abelii
ENSHCOG00000013481lsm310094.118ENSPCAG00000017077LSM310094.118Procavia_capensis
ENSHCOG00000013481lsm310093.137ENSPCOG00000016217-10093.137Propithecus_coquereli
ENSHCOG00000013481lsm39472.917ENSPCOG00000014435-9872.917Propithecus_coquereli
ENSHCOG00000013481lsm310094.118ENSPVAG00000016795LSM310094.118Pteropus_vampyrus
ENSHCOG00000013481lsm310099.020ENSPNYG00000009552lsm37399.020Pundamilia_nyererei
ENSHCOG00000013481lsm310097.059ENSPNAG00000023467lsm310097.059Pygocentrus_nattereri
ENSHCOG00000013481lsm310094.118ENSRNOG00000008733Lsm310094.118Rattus_norvegicus
ENSHCOG00000013481lsm310078.431ENSRBIG00000043783-10078.431Rhinopithecus_bieti
ENSHCOG00000013481lsm310094.118ENSRBIG00000034399LSM310094.118Rhinopithecus_bieti
ENSHCOG00000013481lsm310094.118ENSRROG00000033276-10094.118Rhinopithecus_roxellana
ENSHCOG00000013481lsm310075.490ENSRROG00000044056-10075.490Rhinopithecus_roxellana
ENSHCOG00000013481lsm310079.412ENSRROG00000039868-10079.412Rhinopithecus_roxellana
ENSHCOG00000013481lsm310083.333ENSRROG00000044047-10083.333Rhinopithecus_roxellana
ENSHCOG00000013481lsm310094.118ENSSBOG00000024310LSM310094.118Saimiri_boliviensis_boliviensis
ENSHCOG00000013481lsm310097.059ENSSFOG00015007071lsm310097.059Scleropages_formosus
ENSHCOG00000013481lsm310099.020ENSSMAG00000001818lsm310099.020Scophthalmus_maximus
ENSHCOG00000013481lsm310099.020ENSSDUG00000006040lsm310099.020Seriola_dumerili
ENSHCOG00000013481lsm310099.020ENSSLDG00000006399lsm310099.020Seriola_lalandi_dorsalis
ENSHCOG00000013481lsm35796.552ENSSARG00000005275-10096.552Sorex_araneus
ENSHCOG00000013481lsm39395.789ENSSPUG00000017047-9995.789Sphenodon_punctatus
ENSHCOG00000013481lsm310085.294ENSSPUG00000005394LSM310085.294Sphenodon_punctatus
ENSHCOG00000013481lsm310086.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSHCOG00000013481lsm310094.118ENSSSCG00000011601LSM310094.118Sus_scrofa
ENSHCOG00000013481lsm39571.134ENSSSCG00000023718-9971.134Sus_scrofa
ENSHCOG00000013481lsm310095.098ENSTGUG00000008327LSM310095.098Taeniopygia_guttata
ENSHCOG00000013481lsm310099.020ENSTRUG00000023175lsm310099.020Takifugu_rubripes
ENSHCOG00000013481lsm310099.020ENSTNIG00000005589lsm310099.020Tetraodon_nigroviridis
ENSHCOG00000013481lsm310084.314ENSTBEG00000001050-9984.314Tupaia_belangeri
ENSHCOG00000013481lsm310094.118ENSTTRG00000011197LSM310094.118Tursiops_truncatus
ENSHCOG00000013481lsm310094.118ENSUAMG00000017250-10094.118Ursus_americanus
ENSHCOG00000013481lsm310094.118ENSUMAG00000015905LSM310094.118Ursus_maritimus
ENSHCOG00000013481lsm39395.789ENSVPAG00000010709LSM310095.789Vicugna_pacos
ENSHCOG00000013481lsm310090.196ENSVVUG00000029294-10090.196Vulpes_vulpes
ENSHCOG00000013481lsm310085.294ENSVVUG00000024228-10085.294Vulpes_vulpes
ENSHCOG00000013481lsm310088.235ENSVVUG00000005684-10088.235Vulpes_vulpes
ENSHCOG00000013481lsm310089.216ENSVVUG00000006481-10089.216Vulpes_vulpes
ENSHCOG00000013481lsm310090.196ENSVVUG00000007332-9190.196Vulpes_vulpes
ENSHCOG00000013481lsm310094.118ENSXETG00000011534lsm310094.118Xenopus_tropicalis
ENSHCOG00000013481lsm310099.020ENSXCOG00000017432LSM310099.020Xiphophorus_couchianus
ENSHCOG00000013481lsm310099.020ENSXMAG00000009151lsm310099.020Xiphophorus_maculatus

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