EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000013888 (Gene tree)
Gene ID: 109507106
Gene Symbol: pop1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 9948 bases
Position: chrKV880473.1:1477085-1487032
Accession: 109507106
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000024487	POP1	PF06978.11	4.9e-36	1	2
ENSHCOP00000024487	POP1	PF06978.11	4.9e-36	2	2
ENSHCOP00000024487	POPLD	PF08170.12	5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000017755	-	2823	XM_019856306	ENSHCOP00000024487	940 (aa)	XP_019711865	-

Gene Model

Click here to download ENSHCOG00000013888's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG
hcq03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000013888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000013888	pop1	96	49.679	ENSG00000104356	POP1	90	49.679	Homo_sapiens
ENSHCOG00000013888	pop1	100	66.765	ENSAPOG00000008198	pop1	100	66.765	Acanthochromis_polyacanthus
ENSHCOG00000013888	pop1	96	48.723	ENSAMEG00000000556	POP1	90	48.723	Ailuropoda_melanoleuca
ENSHCOG00000013888	pop1	100	64.510	ENSACIG00000004169	POP1	100	64.510	Amphilophus_citrinellus
ENSHCOG00000013888	pop1	100	65.916	ENSAOCG00000010991	pop1	100	66.373	Amphiprion_ocellaris
ENSHCOG00000013888	pop1	100	65.010	ENSAPEG00000007607	pop1	100	65.279	Amphiprion_percula
ENSHCOG00000013888	pop1	100	64.355	ENSATEG00000024814	POP1	100	66.175	Anabas_testudineus
ENSHCOG00000013888	pop1	97	47.341	ENSAPLG00000014418	POP1	99	47.341	Anas_platyrhynchos
ENSHCOG00000013888	pop1	96	48.120	ENSACAG00000016083	POP1	90	48.120	Anolis_carolinensis
ENSHCOG00000013888	pop1	83	64.583	ENSANAG00000026360	POP1	89	64.583	Aotus_nancymaae
ENSHCOG00000013888	pop1	95	67.249	ENSACLG00000010951	pop1	100	64.538	Astatotilapia_calliptera
ENSHCOG00000013888	pop1	100	52.818	ENSAMXG00000014483	POP1	100	52.818	Astyanax_mexicanus
ENSHCOG00000013888	pop1	87	56.160	ENSBTAG00000012596	POP1	90	50.267	Bos_taurus
ENSHCOG00000013888	pop1	100	46.933	ENSCJAG00000015567	POP1	100	46.933	Callithrix_jacchus
ENSHCOG00000013888	pop1	96	49.731	ENSCAFG00000000469	POP1	90	49.731	Canis_familiaris
ENSHCOG00000013888	pop1	96	49.573	ENSCAFG00020026765	POP1	90	49.573	Canis_lupus_dingo
ENSHCOG00000013888	pop1	96	49.205	ENSCHIG00000017066	POP1	90	49.893	Capra_hircus
ENSHCOG00000013888	pop1	96	49.200	ENSTSYG00000003097	POP1	90	49.252	Carlito_syrichta
ENSHCOG00000013888	pop1	96	46.391	ENSCAPG00000007251	POP1	90	47.053	Cavia_aperea
ENSHCOG00000013888	pop1	96	48.077	ENSCPOG00000002901	POP1	90	48.759	Cavia_porcellus
ENSHCOG00000013888	pop1	100	47.260	ENSCCAG00000018939	POP1	100	47.260	Cebus_capucinus
ENSHCOG00000013888	pop1	96	49.466	ENSCATG00000040916	POP1	90	49.466	Cercocebus_atys
ENSHCOG00000013888	pop1	96	49.893	ENSCLAG00000007208	POP1	87	49.893	Chinchilla_lanigera
ENSHCOG00000013888	pop1	96	48.374	ENSCSAG00000012340	POP1	99	49.201	Chlorocebus_sabaeus
ENSHCOG00000013888	pop1	98	46.154	ENSCHOG00000011432	POP1	96	46.154	Choloepus_hoffmanni
ENSHCOG00000013888	pop1	97	49.572	ENSCPBG00000006373	POP1	91	49.572	Chrysemys_picta_bellii
ENSHCOG00000013888	pop1	96	49.201	ENSCANG00000001647	POP1	90	49.201	Colobus_angolensis_palliatus
ENSHCOG00000013888	pop1	95	47.859	ENSCGRG00001017308	Pop1	90	48.283	Cricetulus_griseus_chok1gshd
ENSHCOG00000013888	pop1	95	44.647	ENSCGRG00000010824	Pop1	100	43.098	Cricetulus_griseus_crigri
ENSHCOG00000013888	pop1	100	62.123	ENSCSEG00000008737	POP1	100	62.622	Cynoglossus_semilaevis
ENSHCOG00000013888	pop1	100	61.730	ENSCVAG00000022248	pop1	100	62.127	Cyprinodon_variegatus
ENSHCOG00000013888	pop1	96	46.336	ENSDNOG00000019974	POP1	90	46.528	Dasypus_novemcinctus
ENSHCOG00000013888	pop1	96	43.856	ENSDORG00000015384	Pop1	89	44.055	Dipodomys_ordii
ENSHCOG00000013888	pop1	65	32.905	FBgn0026702	l(1)G0045	66	33.388	Drosophila_melanogaster
ENSHCOG00000013888	pop1	84	51.050	ENSETEG00000007839	POP1	78	51.050	Echinops_telfairi
ENSHCOG00000013888	pop1	51	37.228	ENSEBUG00000014694	-	99	37.673	Eptatretus_burgeri
ENSHCOG00000013888	pop1	96	49.420	ENSEASG00005003189	POP1	89	49.893	Equus_asinus_asinus
ENSHCOG00000013888	pop1	96	49.786	ENSECAG00000024236	POP1	90	49.786	Equus_caballus
ENSHCOG00000013888	pop1	55	72.727	ENSEEUG00000003050	-	54	72.727	Erinaceus_europaeus
ENSHCOG00000013888	pop1	100	57.100	ENSELUG00000003526	pop1	100	57.696	Esox_lucius
ENSHCOG00000013888	pop1	96	49.303	ENSFCAG00000002168	POP1	90	49.411	Felis_catus
ENSHCOG00000013888	pop1	97	47.273	ENSFALG00000005711	POP1	91	47.166	Ficedula_albicollis
ENSHCOG00000013888	pop1	96	49.412	ENSFDAG00000017068	POP1	90	49.465	Fukomys_damarensis
ENSHCOG00000013888	pop1	100	62.673	ENSFHEG00000019518	pop1	100	62.948	Fundulus_heteroclitus
ENSHCOG00000013888	pop1	100	59.674	ENSGMOG00000000659	POP1	100	59.429	Gadus_morhua
ENSHCOG00000013888	pop1	100	60.582	ENSGAFG00000019770	POP1	100	61.569	Gambusia_affinis
ENSHCOG00000013888	pop1	100	59.885	ENSGACG00000003499	pop1	90	64.051	Gasterosteus_aculeatus
ENSHCOG00000013888	pop1	97	48.666	ENSGAGG00000011737	POP1	89	48.666	Gopherus_agassizii
ENSHCOG00000013888	pop1	96	49.786	ENSGGOG00000003176	POP1	90	49.679	Gorilla_gorilla
ENSHCOG00000013888	pop1	95	67.358	ENSHBUG00000021583	pop1	100	64.637	Haplochromis_burtoni
ENSHCOG00000013888	pop1	95	48.439	ENSHGLG00000006029	POP1	90	48.669	Heterocephalus_glaber_female
ENSHCOG00000013888	pop1	95	48.439	ENSHGLG00100016879	POP1	90	48.669	Heterocephalus_glaber_male
ENSHCOG00000013888	pop1	100	52.216	ENSIPUG00000018336	pop1	100	52.216	Ictalurus_punctatus
ENSHCOG00000013888	pop1	96	49.787	ENSSTOG00000011455	POP1	87	49.787	Ictidomys_tridecemlineatus
ENSHCOG00000013888	pop1	96	47.996	ENSJJAG00000013325	Pop1	90	48.321	Jaculus_jaculus
ENSHCOG00000013888	pop1	100	63.872	ENSKMAG00000001346	POP1	100	64.671	Kryptolebias_marmoratus
ENSHCOG00000013888	pop1	100	61.270	ENSLBEG00000024457	POP1	100	61.602	Labrus_bergylta
ENSHCOG00000013888	pop1	96	50.311	ENSLACG00000012498	POP1	96	50.311	Latimeria_chalumnae
ENSHCOG00000013888	pop1	96	55.423	ENSLOCG00000009817	POP1	90	55.423	Lepisosteus_oculatus
ENSHCOG00000013888	pop1	96	50.964	ENSLAFG00000010770	POP1	90	50.964	Loxodonta_africana
ENSHCOG00000013888	pop1	96	49.359	ENSMFAG00000000347	POP1	90	49.521	Macaca_fascicularis
ENSHCOG00000013888	pop1	96	49.359	ENSMNEG00000036870	POP1	90	49.627	Macaca_nemestrina
ENSHCOG00000013888	pop1	96	49.359	ENSMLEG00000034986	POP1	90	49.521	Mandrillus_leucophaeus
ENSHCOG00000013888	pop1	100	65.914	ENSMAMG00000004040	pop1	100	65.914	Mastacembelus_armatus
ENSHCOG00000013888	pop1	95	67.249	ENSMZEG00005025448	pop1	100	64.538	Maylandia_zebra
ENSHCOG00000013888	pop1	96	47.263	ENSMGAG00000012167	POP1	90	47.368	Meleagris_gallopavo
ENSHCOG00000013888	pop1	96	48.456	ENSMAUG00000017537	Pop1	90	48.456	Mesocricetus_auratus
ENSHCOG00000013888	pop1	96	48.837	ENSMICG00000004361	POP1	90	48.837	Microcebus_murinus
ENSHCOG00000013888	pop1	96	47.953	ENSMOCG00000006356	Pop1	90	48.120	Microtus_ochrogaster
ENSHCOG00000013888	pop1	100	64.227	ENSMMOG00000018242	pop1	100	64.227	Mola_mola
ENSHCOG00000013888	pop1	90	55.763	ENSMODG00000006561	POP1	82	55.763	Monodelphis_domestica
ENSHCOG00000013888	pop1	100	63.824	ENSMALG00000012621	POP1	100	64.447	Monopterus_albus
ENSHCOG00000013888	pop1	96	47.503	MGP_CAROLIEiJ_G0019726	Pop1	90	48.116	Mus_caroli
ENSHCOG00000013888	pop1	96	47.170	ENSMUSG00000022325	Pop1	90	47.831	Mus_musculus
ENSHCOG00000013888	pop1	96	46.845	MGP_PahariEiJ_G0019735	Pop1	90	47.289	Mus_pahari
ENSHCOG00000013888	pop1	96	47.391	MGP_SPRETEiJ_G0020622	Pop1	90	48.004	Mus_spretus
ENSHCOG00000013888	pop1	96	49.572	ENSMPUG00000015250	POP1	90	49.572	Mustela_putorius_furo
ENSHCOG00000013888	pop1	96	47.905	ENSMLUG00000010204	POP1	90	47.910	Myotis_lucifugus
ENSHCOG00000013888	pop1	96	49.303	ENSNGAG00000001582	Pop1	90	49.627	Nannospalax_galili
ENSHCOG00000013888	pop1	100	64.367	ENSNBRG00000002356	pop1	100	64.367	Neolamprologus_brichardi
ENSHCOG00000013888	pop1	96	48.832	ENSNLEG00000002541	POP1	90	48.832	Nomascus_leucogenys
ENSHCOG00000013888	pop1	79	57.944	ENSMEUG00000003118	POP1	88	57.944	Notamacropus_eugenii
ENSHCOG00000013888	pop1	96	50.321	ENSOPRG00000007667	POP1	90	50.321	Ochotona_princeps
ENSHCOG00000013888	pop1	95	47.546	ENSODEG00000003984	POP1	90	47.789	Octodon_degus
ENSHCOG00000013888	pop1	95	67.686	ENSONIG00000016445	pop1	100	64.833	Oreochromis_niloticus
ENSHCOG00000013888	pop1	55	53.012	ENSOANG00000001278	-	79	53.012	Ornithorhynchus_anatinus
ENSHCOG00000013888	pop1	96	48.837	ENSOCUG00000017400	POP1	90	49.360	Oryctolagus_cuniculus
ENSHCOG00000013888	pop1	100	63.527	ENSORLG00000002839	pop1	100	64.128	Oryzias_latipes
ENSHCOG00000013888	pop1	100	66.008	ENSORLG00020022450	POP1	100	66.008	Oryzias_latipes_hni
ENSHCOG00000013888	pop1	100	63.564	ENSORLG00015012746	POP1	100	64.264	Oryzias_latipes_hsok
ENSHCOG00000013888	pop1	100	61.531	ENSOMEG00000006915	pop1	99	62.575	Oryzias_melastigma
ENSHCOG00000013888	pop1	96	48.835	ENSOGAG00000001466	POP1	90	48.997	Otolemur_garnettii
ENSHCOG00000013888	pop1	96	49.786	ENSPPAG00000018410	POP1	90	49.786	Pan_paniscus
ENSHCOG00000013888	pop1	96	49.143	ENSPPRG00000005002	POP1	90	49.143	Panthera_pardus
ENSHCOG00000013888	pop1	96	49.143	ENSPTIG00000016527	POP1	90	49.251	Panthera_tigris_altaica
ENSHCOG00000013888	pop1	89	56.369	ENSPTRG00000020458	POP1	82	56.369	Pan_troglodytes
ENSHCOG00000013888	pop1	96	49.359	ENSPANG00000009704	POP1	90	49.521	Papio_anubis
ENSHCOG00000013888	pop1	100	53.988	ENSPKIG00000016325	POP1	100	54.025	Paramormyrops_kingsleyae
ENSHCOG00000013888	pop1	97	49.467	ENSPSIG00000012343	POP1	90	49.467	Pelodiscus_sinensis
ENSHCOG00000013888	pop1	100	60.041	ENSPMGG00000022253	POP1	100	60.861	Periophthalmus_magnuspinnatus
ENSHCOG00000013888	pop1	96	47.689	ENSPEMG00000023633	Pop1	90	47.639	Peromyscus_maniculatus_bairdii
ENSHCOG00000013888	pop1	96	41.443	ENSPMAG00000003209	POP1	100	41.786	Petromyzon_marinus
ENSHCOG00000013888	pop1	87	55.878	ENSPCIG00000012216	POP1	89	48.523	Phascolarctos_cinereus
ENSHCOG00000013888	pop1	100	61.585	ENSPFOG00000012490	POP1	100	61.986	Poecilia_formosa
ENSHCOG00000013888	pop1	100	61.847	ENSPLAG00000004646	POP1	100	62.249	Poecilia_latipinna
ENSHCOG00000013888	pop1	100	61.222	ENSPMEG00000019592	POP1	100	61.623	Poecilia_mexicana
ENSHCOG00000013888	pop1	95	65.072	ENSPREG00000020951	POP1	100	62.387	Poecilia_reticulata
ENSHCOG00000013888	pop1	96	49.359	ENSPPYG00000018777	POP1	90	49.359	Pongo_abelii
ENSHCOG00000013888	pop1	96	47.146	ENSPCAG00000016662	POP1	90	47.146	Procavia_capensis
ENSHCOG00000013888	pop1	96	48.360	ENSPCOG00000019420	POP1	90	48.360	Propithecus_coquereli
ENSHCOG00000013888	pop1	97	49.151	ENSPVAG00000014468	POP1	91	49.413	Pteropus_vampyrus
ENSHCOG00000013888	pop1	100	65.253	ENSPNYG00000004476	pop1	100	65.874	Pundamilia_nyererei
ENSHCOG00000013888	pop1	100	52.952	ENSPNAG00000000265	pop1	100	52.952	Pygocentrus_nattereri
ENSHCOG00000013888	pop1	96	48.363	ENSRNOG00000005243	Pop1	90	48.934	Rattus_norvegicus
ENSHCOG00000013888	pop1	96	49.466	ENSRBIG00000007996	POP1	90	49.466	Rhinopithecus_bieti
ENSHCOG00000013888	pop1	96	49.467	ENSRROG00000012334	POP1	90	49.414	Rhinopithecus_roxellana
ENSHCOG00000013888	pop1	96	49.200	ENSSBOG00000020830	POP1	91	49.200	Saimiri_boliviensis_boliviensis
ENSHCOG00000013888	pop1	96	49.251	ENSSHAG00000000296	POP1	89	49.251	Sarcophilus_harrisii
ENSHCOG00000013888	pop1	100	55.567	ENSSFOG00015007429	pop1	99	55.567	Scleropages_formosus
ENSHCOG00000013888	pop1	100	67.256	ENSSMAG00000010467	POP1	100	67.775	Scophthalmus_maximus
ENSHCOG00000013888	pop1	100	66.959	ENSSDUG00000007817	POP1	100	67.446	Seriola_dumerili
ENSHCOG00000013888	pop1	100	66.862	ENSSLDG00000012565	POP1	100	67.349	Seriola_lalandi_dorsalis
ENSHCOG00000013888	pop1	96	46.409	ENSSPUG00000003550	-	90	46.882	Sphenodon_punctatus
ENSHCOG00000013888	pop1	100	67.179	ENSSPAG00000014955	pop1	100	67.795	Stegastes_partitus
ENSHCOG00000013888	pop1	96	50.054	ENSSSCG00000006078	POP1	90	50.054	Sus_scrofa
ENSHCOG00000013888	pop1	97	43.455	ENSTGUG00000012011	-	99	43.611	Taeniopygia_guttata
ENSHCOG00000013888	pop1	100	65.182	ENSTRUG00000010856	pop1	100	65.182	Takifugu_rubripes
ENSHCOG00000013888	pop1	96	66.522	ENSTNIG00000013297	pop1	96	66.739	Tetraodon_nigroviridis
ENSHCOG00000013888	pop1	96	46.526	ENSTBEG00000014214	POP1	94	46.872	Tupaia_belangeri
ENSHCOG00000013888	pop1	96	49.142	ENSTTRG00000016071	POP1	90	49.142	Tursiops_truncatus
ENSHCOG00000013888	pop1	96	48.934	ENSUAMG00000017309	POP1	94	48.934	Ursus_americanus
ENSHCOG00000013888	pop1	87	68.027	ENSUMAG00000016952	POP1	89	68.027	Ursus_maritimus
ENSHCOG00000013888	pop1	78	65.868	ENSVPAG00000008278	POP1	71	65.868	Vicugna_pacos
ENSHCOG00000013888	pop1	96	49.625	ENSVVUG00000010994	POP1	90	49.625	Vulpes_vulpes
ENSHCOG00000013888	pop1	100	54.121	ENSXCOG00000017043	POP1	90	57.424	Xiphophorus_couchianus
ENSHCOG00000013888	pop1	100	60.843	ENSXMAG00000002472	POP1	100	60.944	Xiphophorus_maculatus