EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000013985 (Gene tree)
Gene ID: 109509956
Gene Symbol: upf3a
Alias: -
Full Name: regulator of nonsense transcripts 3A-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 12040 bases
Position: chrKV880528.1:5077167-5089206
Accession: 109509956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000011161	Smg4_UPF3	PF03467.15	7.2e-53	1	1
ENSHCOP00000011150	Smg4_UPF3	PF03467.15	1.4e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000017872	-	714	-	ENSHCOP00000011150	237 (aa)	-	-
ENSHCOT00000017806	-	1380	XM_019859924	ENSHCOP00000011161	459 (aa)	XP_019715483	-

Gene Model

Click here to download ENSHCOG00000013985's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000013985's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000013985	upf3a	73	71.429	ENSHCOG00000017004	upf3b	95	49.206

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000013985	upf3a	69	70.482	ENSG00000125351	UPF3B	82	67.978	Homo_sapiens
ENSHCOG00000013985	upf3a	71	75.000	ENSG00000169062	UPF3A	88	50.000	Homo_sapiens
ENSHCOG00000013985	upf3a	96	80.444	ENSAPOG00000013484	upf3a	97	80.000	Acanthochromis_polyacanthus
ENSHCOG00000013985	upf3a	69	73.333	ENSAPOG00000012775	upf3b	93	50.465	Acanthochromis_polyacanthus
ENSHCOG00000013985	upf3a	66	69.182	ENSACIG00000013582	upf3b	93	44.804	Amphilophus_citrinellus
ENSHCOG00000013985	upf3a	95	77.586	ENSACIG00000020468	upf3a	96	77.155	Amphilophus_citrinellus
ENSHCOG00000013985	upf3a	94	81.818	ENSAOCG00000020784	upf3a	94	81.364	Amphiprion_ocellaris
ENSHCOG00000013985	upf3a	69	70.909	ENSAOCG00000000706	upf3b	92	49.415	Amphiprion_ocellaris
ENSHCOG00000013985	upf3a	69	73.333	ENSAPEG00000005545	upf3b	93	50.233	Amphiprion_percula
ENSHCOG00000013985	upf3a	94	81.818	ENSAPEG00000003519	upf3a	94	81.364	Amphiprion_percula
ENSHCOG00000013985	upf3a	69	74.545	ENSATEG00000018742	upf3b	89	53.511	Anabas_testudineus
ENSHCOG00000013985	upf3a	96	79.867	ENSATEG00000005843	upf3a	97	79.425	Anabas_testudineus
ENSHCOG00000013985	upf3a	83	62.690	ENSACAG00000001540	UPF3A	94	62.183	Anolis_carolinensis
ENSHCOG00000013985	upf3a	57	67.647	ENSANAG00000033169	-	55	65.942	Aotus_nancymaae
ENSHCOG00000013985	upf3a	69	70.732	ENSANAG00000021894	-	83	67.598	Aotus_nancymaae
ENSHCOG00000013985	upf3a	66	67.516	ENSANAG00000025598	-	74	66.265	Aotus_nancymaae
ENSHCOG00000013985	upf3a	94	78.384	ENSACLG00000026274	upf3a	95	77.778	Astatotilapia_calliptera
ENSHCOG00000013985	upf3a	94	74.091	ENSAMXG00000002608	upf3a	95	74.091	Astyanax_mexicanus
ENSHCOG00000013985	upf3a	73	67.052	ENSAMXG00000000199	upf3b	61	64.674	Astyanax_mexicanus
ENSHCOG00000013985	upf3a	66	72.611	ENSBTAG00000035615	UPF3B	58	67.416	Bos_taurus
ENSHCOG00000013985	upf3a	65	76.471	ENSBTAG00000047365	-	75	72.121	Bos_taurus
ENSHCOG00000013985	upf3a	69	70.122	ENSCJAG00000004975	UPF3B	83	67.039	Callithrix_jacchus
ENSHCOG00000013985	upf3a	64	71.523	ENSCAFG00020004074	UPF3B	68	76.712	Canis_lupus_dingo
ENSHCOG00000013985	upf3a	66	72.611	ENSCHIG00000018011	-	68	61.722	Capra_hircus
ENSHCOG00000013985	upf3a	71	73.810	ENSCHIG00000008682	UPF3A	80	47.537	Capra_hircus
ENSHCOG00000013985	upf3a	66	71.975	ENSTSYG00000014690	UPF3B	83	62.703	Carlito_syrichta
ENSHCOG00000013985	upf3a	69	71.951	ENSCPOG00000006824	UPF3A	76	50.592	Cavia_porcellus
ENSHCOG00000013985	upf3a	71	74.405	ENSCCAG00000018406	UPF3A	87	48.931	Cebus_capucinus
ENSHCOG00000013985	upf3a	66	58.599	ENSCCAG00000029813	-	58	56.000	Cebus_capucinus
ENSHCOG00000013985	upf3a	71	75.595	ENSCATG00000029733	UPF3A	87	55.714	Cercocebus_atys
ENSHCOG00000013985	upf3a	69	70.732	ENSCATG00000017506	UPF3B	83	67.598	Cercocebus_atys
ENSHCOG00000013985	upf3a	71	74.269	ENSCSAG00000017388	UPF3A	87	55.083	Chlorocebus_sabaeus
ENSHCOG00000013985	upf3a	67	50.943	ENSCING00000008396	-	91	53.741	Ciona_intestinalis
ENSHCOG00000013985	upf3a	66	72.611	ENSCANG00000029220	UPF3B	56	67.978	Colobus_angolensis_palliatus
ENSHCOG00000013985	upf3a	94	80.682	ENSCSEG00000005106	upf3a	95	80.682	Cynoglossus_semilaevis
ENSHCOG00000013985	upf3a	67	73.292	ENSCSEG00000002046	upf3b	92	51.893	Cynoglossus_semilaevis
ENSHCOG00000013985	upf3a	94	80.682	ENSCVAG00000022333	upf3a	94	80.227	Cyprinodon_variegatus
ENSHCOG00000013985	upf3a	67	74.051	ENSDARG00000000489	upf3b	93	49.548	Danio_rerio
ENSHCOG00000013985	upf3a	97	72.467	ENSDARG00000069297	upf3a	99	72.467	Danio_rerio
ENSHCOG00000013985	upf3a	71	75.595	ENSDNOG00000034391	UPF3A	84	54.278	Dasypus_novemcinctus
ENSHCOG00000013985	upf3a	84	52.357	ENSETEG00000010110	UPF3A	83	51.990	Echinops_telfairi
ENSHCOG00000013985	upf3a	66	72.611	ENSEASG00005012919	UPF3B	87	67.470	Equus_asinus_asinus
ENSHCOG00000013985	upf3a	75	71.751	ENSEASG00005021884	UPF3A	84	49.370	Equus_asinus_asinus
ENSHCOG00000013985	upf3a	66	72.611	ENSECAG00000016947	UPF3B	87	61.905	Equus_caballus
ENSHCOG00000013985	upf3a	96	72.707	ENSELUG00000011050	upf3a	98	72.271	Esox_lucius
ENSHCOG00000013985	upf3a	73	75.581	ENSFCAG00000014602	UPF3A	85	52.439	Felis_catus
ENSHCOG00000013985	upf3a	62	78.808	ENSFHEG00000010418	upf3a	84	77.273	Fundulus_heteroclitus
ENSHCOG00000013985	upf3a	65	79.870	ENSGALG00000016815	-	68	85.577	Gallus_gallus
ENSHCOG00000013985	upf3a	97	77.363	ENSGAFG00000021170	upf3a	97	77.363	Gambusia_affinis
ENSHCOG00000013985	upf3a	68	71.250	ENSGACG00000017435	upf3b	65	69.101	Gasterosteus_aculeatus
ENSHCOG00000013985	upf3a	65	79.355	ENSGAGG00000001952	UPF3A	81	83.803	Gopherus_agassizii
ENSHCOG00000013985	upf3a	82	46.766	ENSGGOG00000041219	-	89	44.776	Gorilla_gorilla
ENSHCOG00000013985	upf3a	83	46.535	ENSGGOG00000043074	-	84	44.554	Gorilla_gorilla
ENSHCOG00000013985	upf3a	66	72.611	ENSGGOG00000023995	UPF3B	64	69.291	Gorilla_gorilla
ENSHCOG00000013985	upf3a	94	81.591	ENSHBUG00000011325	upf3a	94	81.136	Haplochromis_burtoni
ENSHCOG00000013985	upf3a	97	72.867	ENSIPUG00000023450	upf3a	99	73.187	Ictalurus_punctatus
ENSHCOG00000013985	upf3a	65	72.727	ENSSTOG00000030282	-	69	69.512	Ictidomys_tridecemlineatus
ENSHCOG00000013985	upf3a	65	72.727	ENSJJAG00000018099	-	78	68.263	Jaculus_jaculus
ENSHCOG00000013985	upf3a	69	69.697	ENSKMAG00000020300	upf3b	92	49.650	Kryptolebias_marmoratus
ENSHCOG00000013985	upf3a	94	80.952	ENSKMAG00000004381	upf3a	94	80.499	Kryptolebias_marmoratus
ENSHCOG00000013985	upf3a	96	76.786	ENSLBEG00000021570	upf3a	98	75.670	Labrus_bergylta
ENSHCOG00000013985	upf3a	60	43.323	ENSLACG00000006645	UPF3A	66	86.792	Latimeria_chalumnae
ENSHCOG00000013985	upf3a	65	75.974	ENSLACG00000008691	UPF3B	95	50.328	Latimeria_chalumnae
ENSHCOG00000013985	upf3a	94	69.438	ENSLOCG00000002665	upf3a	96	68.834	Lepisosteus_oculatus
ENSHCOG00000013985	upf3a	69	74.545	ENSLOCG00000015238	upf3b	89	51.485	Lepisosteus_oculatus
ENSHCOG00000013985	upf3a	68	58.659	ENSMFAG00000045275	-	90	57.527	Macaca_fascicularis
ENSHCOG00000013985	upf3a	69	70.732	ENSMFAG00000045414	UPF3B	83	67.598	Macaca_fascicularis
ENSHCOG00000013985	upf3a	66	78.846	ENSMMUG00000007449	UPF3A	85	52.882	Macaca_mulatta
ENSHCOG00000013985	upf3a	69	70.732	ENSMMUG00000020222	UPF3B	83	67.598	Macaca_mulatta
ENSHCOG00000013985	upf3a	68	58.580	ENSMMUG00000046682	-	83	58.580	Macaca_mulatta
ENSHCOG00000013985	upf3a	66	78.344	ENSMNEG00000036402	UPF3A	80	53.030	Macaca_nemestrina
ENSHCOG00000013985	upf3a	68	58.101	ENSMNEG00000040898	-	90	56.989	Macaca_nemestrina
ENSHCOG00000013985	upf3a	69	70.732	ENSMNEG00000039794	UPF3B	83	67.598	Macaca_nemestrina
ENSHCOG00000013985	upf3a	69	70.732	ENSMLEG00000010999	UPF3B	83	67.598	Mandrillus_leucophaeus
ENSHCOG00000013985	upf3a	66	78.344	ENSMLEG00000014726	UPF3A	91	56.500	Mandrillus_leucophaeus
ENSHCOG00000013985	upf3a	94	78.728	ENSMAMG00000018364	upf3a	94	77.851	Mastacembelus_armatus
ENSHCOG00000013985	upf3a	94	78.384	ENSMZEG00005021571	upf3a	95	77.778	Maylandia_zebra
ENSHCOG00000013985	upf3a	79	63.830	ENSMGAG00000014837	UPF3A	92	63.130	Meleagris_gallopavo
ENSHCOG00000013985	upf3a	66	72.611	ENSMICG00000001743	UPF3B	55	67.416	Microcebus_murinus
ENSHCOG00000013985	upf3a	94	77.243	ENSMMOG00000019751	upf3a	94	77.243	Mola_mola
ENSHCOG00000013985	upf3a	84	64.912	ENSMODG00000003159	UPF3A	93	65.163	Monodelphis_domestica
ENSHCOG00000013985	upf3a	66	71.698	ENSMALG00000008042	upf3b	92	48.140	Monopterus_albus
ENSHCOG00000013985	upf3a	71	74.405	ENSMPUG00000009139	UPF3A	82	51.880	Mustela_putorius_furo
ENSHCOG00000013985	upf3a	66	76.398	ENSMLUG00000015905	UPF3A	92	54.145	Myotis_lucifugus
ENSHCOG00000013985	upf3a	94	81.591	ENSNBRG00000000828	upf3a	94	81.136	Neolamprologus_brichardi
ENSHCOG00000013985	upf3a	70	67.066	ENSNBRG00000011560	upf3b	82	72.131	Neolamprologus_brichardi
ENSHCOG00000013985	upf3a	71	74.405	ENSNLEG00000007563	UPF3A	84	55.746	Nomascus_leucogenys
ENSHCOG00000013985	upf3a	66	72.611	ENSNLEG00000014897	UPF3B	67	69.291	Nomascus_leucogenys
ENSHCOG00000013985	upf3a	66	60.510	ENSNLEG00000027516	-	78	59.146	Nomascus_leucogenys
ENSHCOG00000013985	upf3a	63	72.000	ENSODEG00000009176	-	60	72.000	Octodon_degus
ENSHCOG00000013985	upf3a	61	62.759	ENSODEG00000006064	-	77	60.526	Octodon_degus
ENSHCOG00000013985	upf3a	52	60.800	ENSODEG00000000596	-	66	58.333	Octodon_degus
ENSHCOG00000013985	upf3a	60	61.905	ENSODEG00000007164	-	70	57.485	Octodon_degus
ENSHCOG00000013985	upf3a	94	76.244	ENSONIG00000006817	upf3a	94	81.674	Oreochromis_niloticus
ENSHCOG00000013985	upf3a	77	55.707	ENSOANG00000006985	-	95	55.313	Ornithorhynchus_anatinus
ENSHCOG00000013985	upf3a	95	75.839	ENSORLG00000010911	upf3a	95	75.391	Oryzias_latipes
ENSHCOG00000013985	upf3a	68	70.000	ENSORLG00020003758	upf3b	51	70.946	Oryzias_latipes_hni
ENSHCOG00000013985	upf3a	95	69.752	ENSORLG00020014317	upf3a	95	73.138	Oryzias_latipes_hni
ENSHCOG00000013985	upf3a	95	76.126	ENSORLG00015017339	upf3a	55	75.450	Oryzias_latipes_hsok
ENSHCOG00000013985	upf3a	95	77.652	ENSOMEG00000014425	upf3a	95	77.201	Oryzias_melastigma
ENSHCOG00000013985	upf3a	89	61.972	ENSOARG00000009004	UPF3A	83	51.515	Ovis_aries
ENSHCOG00000013985	upf3a	66	72.611	ENSPPAG00000040390	UPF3B	64	69.291	Pan_paniscus
ENSHCOG00000013985	upf3a	73	74.419	ENSPPRG00000025062	UPF3A	85	51.951	Panthera_pardus
ENSHCOG00000013985	upf3a	66	72.611	ENSPTIG00000015264	UPF3B	56	67.416	Panthera_tigris_altaica
ENSHCOG00000013985	upf3a	66	72.611	ENSPTRG00000022228	UPF3B	64	69.291	Pan_troglodytes
ENSHCOG00000013985	upf3a	82	42.786	ENSPTRG00000051640	-	89	40.796	Pan_troglodytes
ENSHCOG00000013985	upf3a	71	75.000	ENSPTRG00000006073	UPF3A	84	51.100	Pan_troglodytes
ENSHCOG00000013985	upf3a	66	60.510	ENSPTRG00000041187	-	89	44.059	Pan_troglodytes
ENSHCOG00000013985	upf3a	69	70.732	ENSPANG00000000900	UPF3B	83	67.598	Papio_anubis
ENSHCOG00000013985	upf3a	71	57.865	ENSPANG00000029350	-	89	55.851	Papio_anubis
ENSHCOG00000013985	upf3a	75	74.011	ENSPANG00000004346	UPF3A	84	53.218	Papio_anubis
ENSHCOG00000013985	upf3a	83	65.657	ENSPKIG00000019226	upf3b	92	65.753	Paramormyrops_kingsleyae
ENSHCOG00000013985	upf3a	84	78.818	ENSPKIG00000004422	upf3a	93	67.067	Paramormyrops_kingsleyae
ENSHCOG00000013985	upf3a	83	65.570	ENSPSIG00000007468	UPF3A	96	64.557	Pelodiscus_sinensis
ENSHCOG00000013985	upf3a	68	70.552	ENSPMGG00000016067	upf3b	60	69.697	Periophthalmus_magnuspinnatus
ENSHCOG00000013985	upf3a	95	76.293	ENSPMGG00000012696	upf3a	95	76.293	Periophthalmus_magnuspinnatus
ENSHCOG00000013985	upf3a	71	79.762	ENSPCIG00000019590	-	90	65.049	Phascolarctos_cinereus
ENSHCOG00000013985	upf3a	96	77.655	ENSPFOG00000013222	upf3a	94	79.545	Poecilia_formosa
ENSHCOG00000013985	upf3a	96	71.460	ENSPLAG00000011960	upf3a	96	78.636	Poecilia_latipinna
ENSHCOG00000013985	upf3a	94	76.471	ENSPMEG00000000836	upf3a	94	76.035	Poecilia_mexicana
ENSHCOG00000013985	upf3a	63	78.289	ENSPREG00000005566	upf3a	89	78.289	Poecilia_reticulata
ENSHCOG00000013985	upf3a	66	72.611	ENSPPYG00000020675	-	53	67.978	Pongo_abelii
ENSHCOG00000013985	upf3a	71	74.405	ENSPPYG00000005536	UPF3A	84	51.345	Pongo_abelii
ENSHCOG00000013985	upf3a	66	72.611	ENSPCOG00000021960	UPF3B	55	67.416	Propithecus_coquereli
ENSHCOG00000013985	upf3a	94	78.384	ENSPNYG00000011289	upf3a	95	77.778	Pundamilia_nyererei
ENSHCOG00000013985	upf3a	67	76.582	ENSPNAG00000021528	upf3b	55	73.939	Pygocentrus_nattereri
ENSHCOG00000013985	upf3a	97	72.331	ENSPNAG00000019532	upf3a	99	72.648	Pygocentrus_nattereri
ENSHCOG00000013985	upf3a	71	75.000	ENSRBIG00000034007	UPF3A	92	50.476	Rhinopithecus_bieti
ENSHCOG00000013985	upf3a	66	78.846	ENSRROG00000012212	UPF3A	83	52.632	Rhinopithecus_roxellana
ENSHCOG00000013985	upf3a	69	70.732	ENSRROG00000041031	UPF3B	83	67.598	Rhinopithecus_roxellana
ENSHCOG00000013985	upf3a	66	72.611	ENSSBOG00000019740	UPF3B	81	69.006	Saimiri_boliviensis_boliviensis
ENSHCOG00000013985	upf3a	83	65.657	ENSSHAG00000009895	UPF3A	94	65.909	Sarcophilus_harrisii
ENSHCOG00000013985	upf3a	76	69.231	ENSSFOG00015005614	upf3b	95	48.090	Scleropages_formosus
ENSHCOG00000013985	upf3a	84	66.667	ENSSMAG00000012913	upf3b	94	48.899	Scophthalmus_maximus
ENSHCOG00000013985	upf3a	94	73.504	ENSSMAG00000003858	upf3a	95	74.359	Scophthalmus_maximus
ENSHCOG00000013985	upf3a	94	78.728	ENSSDUG00000009680	upf3a	94	78.289	Seriola_dumerili
ENSHCOG00000013985	upf3a	94	81.591	ENSSLDG00000009700	upf3a	94	81.136	Seriola_lalandi_dorsalis
ENSHCOG00000013985	upf3a	79	46.684	ENSSARG00000007262	UPF3A	92	42.287	Sorex_araneus
ENSHCOG00000013985	upf3a	73	70.286	ENSSPAG00000009989	upf3b	95	49.545	Stegastes_partitus
ENSHCOG00000013985	upf3a	94	83.257	ENSSPAG00000007938	upf3a	94	83.257	Stegastes_partitus
ENSHCOG00000013985	upf3a	71	74.405	ENSSSCG00000024679	UPF3A	81	49.383	Sus_scrofa
ENSHCOG00000013985	upf3a	71	78.571	ENSTGUG00000009493	UPF3A	99	65.482	Taeniopygia_guttata
ENSHCOG00000013985	upf3a	93	71.264	ENSTRUG00000012730	upf3a	94	76.606	Takifugu_rubripes
ENSHCOG00000013985	upf3a	71	87.500	ENSTNIG00000014973	upf3a	99	73.057	Tetraodon_nigroviridis
ENSHCOG00000013985	upf3a	53	69.841	ENSTBEG00000003229	UPF3B	54	55.828	Tupaia_belangeri
ENSHCOG00000013985	upf3a	51	75.000	ENSTTRG00000015414	UPF3A	73	48.415	Tursiops_truncatus
ENSHCOG00000013985	upf3a	70	67.879	ENSUAMG00000024565	UPF3B	69	72.464	Ursus_americanus
ENSHCOG00000013985	upf3a	69	70.732	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSHCOG00000013985	upf3a	72	77.193	ENSXETG00000002572	upf3a	91	57.841	Xenopus_tropicalis
ENSHCOG00000013985	upf3a	65	77.124	ENSXETG00000007440	upf3b	84	64.500	Xenopus_tropicalis
ENSHCOG00000013985	upf3a	66	71.698	ENSXCOG00000016586	upf3b	98	65.517	Xiphophorus_couchianus
ENSHCOG00000013985	upf3a	94	80.000	ENSXMAG00000013452	upf3a	94	79.545	Xiphophorus_maculatus