EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000014062 (Gene tree)
Gene ID: 109515519
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 16790 bases
Position: chrKV879929.1:906539-923328
Accession: 109515519
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000024559	XRN_N	PF03159.18	8e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000017879	-	4761	XM_019869365	ENSHCOP00000024559	1586 (aa)	XP_019724924	-

Gene Model

Click here to download ENSHCOG00000014062's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03008	Ribosome biogenesis in eukaryotes	KEGG
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000014062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000014062	xrn1	99	69.531	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSHCOG00000014062	xrn1	99	77.122	ENSAPOG00000000622	xrn1	94	84.144	Acanthochromis_polyacanthus
ENSHCOG00000014062	xrn1	97	69.786	ENSAMEG00000012538	XRN1	94	70.024	Ailuropoda_melanoleuca
ENSHCOG00000014062	xrn1	99	84.258	ENSACIG00000001057	xrn1	96	84.258	Amphilophus_citrinellus
ENSHCOG00000014062	xrn1	99	84.452	ENSAOCG00000014097	xrn1	94	84.534	Amphiprion_ocellaris
ENSHCOG00000014062	xrn1	99	84.804	ENSAPEG00000006620	xrn1	94	84.886	Amphiprion_percula
ENSHCOG00000014062	xrn1	99	73.632	ENSATEG00000009752	xrn1	100	73.632	Anabas_testudineus
ENSHCOG00000014062	xrn1	98	69.758	ENSAPLG00000004905	XRN1	95	69.677	Anas_platyrhynchos
ENSHCOG00000014062	xrn1	99	71.255	ENSACAG00000004985	XRN1	91	71.452	Anolis_carolinensis
ENSHCOG00000014062	xrn1	95	70.234	ENSANAG00000029013	XRN1	99	73.013	Aotus_nancymaae
ENSHCOG00000014062	xrn1	99	83.755	ENSACLG00000004806	xrn1	94	83.755	Astatotilapia_calliptera
ENSHCOG00000014062	xrn1	99	74.550	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSHCOG00000014062	xrn1	99	69.844	ENSBTAG00000011524	XRN1	96	71.337	Bos_taurus
ENSHCOG00000014062	xrn1	76	38.200	WBGene00012730	xrn-1	85	37.456	Caenorhabditis_elegans
ENSHCOG00000014062	xrn1	99	70.000	ENSCJAG00000001872	XRN1	98	69.852	Callithrix_jacchus
ENSHCOG00000014062	xrn1	97	70.391	ENSCAFG00000007783	XRN1	96	71.566	Canis_familiaris
ENSHCOG00000014062	xrn1	97	70.312	ENSCAFG00020009120	XRN1	99	74.154	Canis_lupus_dingo
ENSHCOG00000014062	xrn1	99	69.531	ENSCHIG00000019192	XRN1	93	71.095	Capra_hircus
ENSHCOG00000014062	xrn1	99	70.129	ENSTSYG00000002705	XRN1	96	70.451	Carlito_syrichta
ENSHCOG00000014062	xrn1	60	61.248	ENSCAPG00000004604	-	99	61.412	Cavia_aperea
ENSHCOG00000014062	xrn1	99	70.000	ENSCCAG00000034800	XRN1	99	77.031	Cebus_capucinus
ENSHCOG00000014062	xrn1	96	70.095	ENSCATG00000041794	XRN1	97	69.945	Cercocebus_atys
ENSHCOG00000014062	xrn1	99	69.531	ENSCLAG00000001451	XRN1	99	77.567	Chinchilla_lanigera
ENSHCOG00000014062	xrn1	96	70.253	ENSCSAG00000011265	XRN1	97	70.102	Chlorocebus_sabaeus
ENSHCOG00000014062	xrn1	54	94.805	ENSCHOG00000013961	-	52	95.833	Choloepus_hoffmanni
ENSHCOG00000014062	xrn1	75	50.199	ENSCSAVG00000008584	-	94	49.551	Ciona_savignyi
ENSHCOG00000014062	xrn1	96	70.008	ENSCANG00000037495	XRN1	99	75.495	Colobus_angolensis_palliatus
ENSHCOG00000014062	xrn1	98	70.913	ENSCGRG00001019411	Xrn1	99	76.462	Cricetulus_griseus_chok1gshd
ENSHCOG00000014062	xrn1	98	70.913	ENSCGRG00000012464	Xrn1	99	76.462	Cricetulus_griseus_crigri
ENSHCOG00000014062	xrn1	99	76.537	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSHCOG00000014062	xrn1	71	79.225	ENSCVAG00000013089	xrn1	99	82.570	Cyprinodon_variegatus
ENSHCOG00000014062	xrn1	99	77.124	ENSDARG00000091652	xrn1	98	80.665	Danio_rerio
ENSHCOG00000014062	xrn1	99	70.294	ENSDORG00000013833	Xrn1	95	71.118	Dipodomys_ordii
ENSHCOG00000014062	xrn1	75	40.820	FBgn0020261	pcm	72	40.902	Drosophila_melanogaster
ENSHCOG00000014062	xrn1	85	73.874	ENSETEG00000003978	XRN1	85	74.380	Echinops_telfairi
ENSHCOG00000014062	xrn1	97	71.176	ENSEASG00005002687	XRN1	99	76.000	Equus_asinus_asinus
ENSHCOG00000014062	xrn1	97	70.095	ENSECAG00000008301	XRN1	96	71.360	Equus_caballus
ENSHCOG00000014062	xrn1	81	65.407	ENSEEUG00000011323	XRN1	76	65.407	Erinaceus_europaeus
ENSHCOG00000014062	xrn1	99	77.733	ENSELUG00000000169	xrn1	95	77.976	Esox_lucius
ENSHCOG00000014062	xrn1	99	66.236	ENSFCAG00000027589	XRN1	98	80.132	Felis_catus
ENSHCOG00000014062	xrn1	99	70.864	ENSFALG00000007021	XRN1	91	71.278	Ficedula_albicollis
ENSHCOG00000014062	xrn1	97	68.987	ENSFDAG00000020494	XRN1	99	75.846	Fukomys_damarensis
ENSHCOG00000014062	xrn1	94	72.712	ENSGMOG00000006396	xrn1	87	73.124	Gadus_morhua
ENSHCOG00000014062	xrn1	99	71.302	ENSGALG00000002706	XRN1	91	71.197	Gallus_gallus
ENSHCOG00000014062	xrn1	99	82.595	ENSGACG00000014328	xrn1	94	82.595	Gasterosteus_aculeatus
ENSHCOG00000014062	xrn1	94	71.208	ENSGAGG00000017535	XRN1	96	70.040	Gopherus_agassizii
ENSHCOG00000014062	xrn1	99	69.531	ENSGGOG00000008047	XRN1	96	70.616	Gorilla_gorilla
ENSHCOG00000014062	xrn1	99	81.944	ENSHBUG00000005908	xrn1	98	79.588	Haplochromis_burtoni
ENSHCOG00000014062	xrn1	99	69.460	ENSHGLG00000014476	XRN1	99	75.846	Heterocephalus_glaber_female
ENSHCOG00000014062	xrn1	99	69.381	ENSHGLG00100015130	XRN1	99	75.846	Heterocephalus_glaber_male
ENSHCOG00000014062	xrn1	99	76.175	ENSIPUG00000015229	xrn1	95	76.233	Ictalurus_punctatus
ENSHCOG00000014062	xrn1	97	69.844	ENSSTOG00000013552	XRN1	99	75.076	Ictidomys_tridecemlineatus
ENSHCOG00000014062	xrn1	93	69.427	ENSJJAG00000010863	Xrn1	99	75.684	Jaculus_jaculus
ENSHCOG00000014062	xrn1	99	81.030	ENSKMAG00000021356	xrn1	95	82.008	Kryptolebias_marmoratus
ENSHCOG00000014062	xrn1	99	83.388	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSHCOG00000014062	xrn1	99	70.640	ENSLACG00000009020	XRN1	93	70.640	Latimeria_chalumnae
ENSHCOG00000014062	xrn1	99	74.878	ENSLOCG00000007944	xrn1	99	71.948	Lepisosteus_oculatus
ENSHCOG00000014062	xrn1	66	73.164	ENSLAFG00000015426	XRN1	99	73.414	Loxodonta_africana
ENSHCOG00000014062	xrn1	96	70.174	ENSMFAG00000032599	XRN1	97	70.024	Macaca_fascicularis
ENSHCOG00000014062	xrn1	96	70.174	ENSMMUG00000014038	XRN1	97	70.024	Macaca_mulatta
ENSHCOG00000014062	xrn1	96	70.253	ENSMNEG00000034217	XRN1	97	70.253	Macaca_nemestrina
ENSHCOG00000014062	xrn1	100	73.580	ENSMAMG00000013219	xrn1	92	84.599	Mastacembelus_armatus
ENSHCOG00000014062	xrn1	99	83.592	ENSMZEG00005015099	xrn1	94	83.592	Maylandia_zebra
ENSHCOG00000014062	xrn1	98	68.544	ENSMGAG00000006333	XRN1	94	68.277	Meleagris_gallopavo
ENSHCOG00000014062	xrn1	98	70.332	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSHCOG00000014062	xrn1	62	76.462	ENSMOCG00000008665	Xrn1	99	76.462	Microtus_ochrogaster
ENSHCOG00000014062	xrn1	99	72.689	ENSMODG00000021236	XRN1	94	72.158	Monodelphis_domestica
ENSHCOG00000014062	xrn1	99	68.831	ENSMALG00000004098	xrn1	100	69.322	Monopterus_albus
ENSHCOG00000014062	xrn1	95	77.638	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSHCOG00000014062	xrn1	99	69.782	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSHCOG00000014062	xrn1	99	70.720	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSHCOG00000014062	xrn1	99	69.782	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSHCOG00000014062	xrn1	97	71.141	ENSMPUG00000012040	XRN1	96	71.314	Mustela_putorius_furo
ENSHCOG00000014062	xrn1	99	70.804	ENSMLUG00000016885	XRN1	96	70.883	Myotis_lucifugus
ENSHCOG00000014062	xrn1	62	72.910	ENSNGAG00000023964	Xrn1	99	73.375	Nannospalax_galili
ENSHCOG00000014062	xrn1	95	69.609	ENSNLEG00000004726	XRN1	96	70.697	Nomascus_leucogenys
ENSHCOG00000014062	xrn1	67	96.907	ENSMEUG00000014473	-	63	97.087	Notamacropus_eugenii
ENSHCOG00000014062	xrn1	69	66.825	ENSOPRG00000007337	-	63	66.877	Ochotona_princeps
ENSHCOG00000014062	xrn1	99	83.159	ENSONIG00000016673	xrn1	96	83.159	Oreochromis_niloticus
ENSHCOG00000014062	xrn1	91	66.439	ENSOANG00000006735	XRN1	98	66.015	Ornithorhynchus_anatinus
ENSHCOG00000014062	xrn1	99	71.224	ENSOCUG00000001861	XRN1	94	71.406	Oryctolagus_cuniculus
ENSHCOG00000014062	xrn1	99	82.353	ENSORLG00000013005	xrn1	93	82.353	Oryzias_latipes
ENSHCOG00000014062	xrn1	99	82.108	ENSORLG00020005559	xrn1	95	82.108	Oryzias_latipes_hni
ENSHCOG00000014062	xrn1	94	74.237	ENSORLG00015022523	xrn1	100	74.150	Oryzias_latipes_hsok
ENSHCOG00000014062	xrn1	99	82.761	ENSOMEG00000015397	xrn1	96	82.598	Oryzias_melastigma
ENSHCOG00000014062	xrn1	99	69.082	ENSOGAG00000000170	XRN1	96	69.175	Otolemur_garnettii
ENSHCOG00000014062	xrn1	99	69.609	ENSOARG00000006343	XRN1	96	71.095	Ovis_aries
ENSHCOG00000014062	xrn1	99	69.688	ENSPPAG00000010180	XRN1	98	69.542	Pan_paniscus
ENSHCOG00000014062	xrn1	99	71.234	ENSPPRG00000007125	XRN1	96	71.256	Panthera_pardus
ENSHCOG00000014062	xrn1	99	71.176	ENSPTIG00000021081	XRN1	96	71.256	Panthera_tigris_altaica
ENSHCOG00000014062	xrn1	99	69.688	ENSPTRG00000015482	XRN1	96	70.777	Pan_troglodytes
ENSHCOG00000014062	xrn1	99	70.174	ENSPANG00000010638	XRN1	97	70.024	Papio_anubis
ENSHCOG00000014062	xrn1	99	70.574	ENSPSIG00000018050	XRN1	94	70.391	Pelodiscus_sinensis
ENSHCOG00000014062	xrn1	61	82.544	ENSPMGG00000002648	xrn1	99	82.835	Periophthalmus_magnuspinnatus
ENSHCOG00000014062	xrn1	62	76.462	ENSPEMG00000020610	Xrn1	99	76.615	Peromyscus_maniculatus_bairdii
ENSHCOG00000014062	xrn1	70	50.042	ENSPMAG00000002975	xrn1	99	48.379	Petromyzon_marinus
ENSHCOG00000014062	xrn1	99	72.383	ENSPCIG00000028735	XRN1	99	76.935	Phascolarctos_cinereus
ENSHCOG00000014062	xrn1	90	83.157	ENSPFOG00000013932	xrn1	95	81.644	Poecilia_formosa
ENSHCOG00000014062	xrn1	90	83.333	ENSPLAG00000021653	xrn1	93	83.333	Poecilia_latipinna
ENSHCOG00000014062	xrn1	88	83.048	ENSPMEG00000003076	xrn1	89	83.048	Poecilia_mexicana
ENSHCOG00000014062	xrn1	99	82.818	ENSPREG00000021147	xrn1	94	82.899	Poecilia_reticulata
ENSHCOG00000014062	xrn1	99	69.844	ENSPPYG00000014172	XRN1	98	69.775	Pongo_abelii
ENSHCOG00000014062	xrn1	86	66.584	ENSPCAG00000005638	XRN1	91	66.502	Procavia_capensis
ENSHCOG00000014062	xrn1	98	70.476	ENSPCOG00000013089	XRN1	99	77.031	Propithecus_coquereli
ENSHCOG00000014062	xrn1	93	69.741	ENSPVAG00000016265	XRN1	87	85.260	Pteropus_vampyrus
ENSHCOG00000014062	xrn1	99	82.925	ENSPNYG00000010570	xrn1	95	82.925	Pundamilia_nyererei
ENSHCOG00000014062	xrn1	99	73.779	ENSPNAG00000023531	xrn1	96	74.023	Pygocentrus_nattereri
ENSHCOG00000014062	xrn1	99	70.221	ENSRNOG00000042951	Xrn1	94	70.221	Rattus_norvegicus
ENSHCOG00000014062	xrn1	96	70.016	ENSRBIG00000041227	XRN1	97	69.866	Rhinopithecus_bieti
ENSHCOG00000014062	xrn1	74	33.178	YGL173C	XRN1	72	53.261	Saccharomyces_cerevisiae
ENSHCOG00000014062	xrn1	95	70.873	ENSSBOG00000029561	XRN1	97	70.639	Saimiri_boliviensis_boliviensis
ENSHCOG00000014062	xrn1	98	70.419	ENSSHAG00000016207	XRN1	96	70.337	Sarcophilus_harrisii
ENSHCOG00000014062	xrn1	98	77.317	ENSSFOG00015024211	xrn1	95	77.451	Scleropages_formosus
ENSHCOG00000014062	xrn1	99	83.483	ENSSMAG00000016534	xrn1	94	83.483	Scophthalmus_maximus
ENSHCOG00000014062	xrn1	99	71.833	ENSSDUG00000010306	xrn1	100	72.140	Seriola_dumerili
ENSHCOG00000014062	xrn1	99	83.211	ENSSLDG00000021543	xrn1	95	83.211	Seriola_lalandi_dorsalis
ENSHCOG00000014062	xrn1	65	67.146	ENSSARG00000007741	-	75	67.146	Sorex_araneus
ENSHCOG00000014062	xrn1	99	70.991	ENSTGUG00000008498	XRN1	96	70.833	Taeniopygia_guttata
ENSHCOG00000014062	xrn1	99	79.676	ENSTRUG00000004895	xrn1	99	81.314	Takifugu_rubripes
ENSHCOG00000014062	xrn1	99	78.457	ENSTNIG00000017615	xrn1	96	78.554	Tetraodon_nigroviridis
ENSHCOG00000014062	xrn1	72	84.946	ENSTBEG00000003256	XRN1	75	71.701	Tupaia_belangeri
ENSHCOG00000014062	xrn1	92	67.656	ENSTTRG00000012914	XRN1	84	69.082	Tursiops_truncatus
ENSHCOG00000014062	xrn1	97	69.163	ENSUAMG00000001608	XRN1	99	72.769	Ursus_americanus
ENSHCOG00000014062	xrn1	97	70.934	ENSUMAG00000013625	XRN1	96	71.176	Ursus_maritimus
ENSHCOG00000014062	xrn1	99	67.502	ENSVPAG00000004690	XRN1	97	68.283	Vicugna_pacos
ENSHCOG00000014062	xrn1	97	70.156	ENSVVUG00000024461	XRN1	99	76.520	Vulpes_vulpes
ENSHCOG00000014062	xrn1	99	71.151	ENSXETG00000000619	xrn1	99	84.474	Xenopus_tropicalis
ENSHCOG00000014062	xrn1	99	82.204	ENSXCOG00000007917	xrn1	96	82.204	Xiphophorus_couchianus
ENSHCOG00000014062	xrn1	99	73.165	ENSXMAG00000018320	xrn1	100	73.350	Xiphophorus_maculatus