EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000014222 (Gene tree)
Gene ID: 109530678
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 26383 bases
Position: chrKV879789.1:589845-616227
Accession: 109530678
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000011388	ResIII	PF04851.15	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000018094	-	4797	XM_019894579	ENSHCOP00000011388	1598 (aa)	XP_019750138	-

Gene Model

Click here to download ENSHCOG00000014222's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000014222's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000014222	chd1	96	53.424	ENSHCOG00000008855	chd2	89	55.640

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000014222	chd1	91	79.678	ENSG00000153922	CHD1	91	84.466	Homo_sapiens
ENSHCOG00000014222	chd1	71	91.580	ENSAPOG00000005764	chd1	97	91.565	Acanthochromis_polyacanthus
ENSHCOG00000014222	chd1	96	89.358	ENSAOCG00000023105	chd1	96	89.228	Amphiprion_ocellaris
ENSHCOG00000014222	chd1	96	90.532	ENSAPEG00000013544	chd1	96	90.402	Amphiprion_percula
ENSHCOG00000014222	chd1	93	90.106	ENSATEG00000010676	chd1	90	89.774	Anabas_testudineus
ENSHCOG00000014222	chd1	79	85.422	ENSAMXG00000010843	chd1	96	85.208	Astyanax_mexicanus
ENSHCOG00000014222	chd1	91	79.611	ENSCATG00000032035	CHD1	88	79.178	Cercocebus_atys
ENSHCOG00000014222	chd1	91	79.611	ENSCSAG00000015339	CHD1	87	79.178	Chlorocebus_sabaeus
ENSHCOG00000014222	chd1	55	79.067	ENSCPBG00000015831	CHD1	83	80.607	Chrysemys_picta_bellii
ENSHCOG00000014222	chd1	91	77.733	ENSCANG00000036916	CHD1	89	76.243	Colobus_angolensis_palliatus
ENSHCOG00000014222	chd1	91	78.969	ENSCGRG00001023943	Chd1	88	78.463	Cricetulus_griseus_chok1gshd
ENSHCOG00000014222	chd1	91	78.969	ENSCGRG00000008652	Chd1	88	78.463	Cricetulus_griseus_crigri
ENSHCOG00000014222	chd1	95	85.336	ENSCSEG00000009553	chd1	97	85.152	Cynoglossus_semilaevis
ENSHCOG00000014222	chd1	76	81.678	ENSEASG00005016110	CHD1	96	74.951	Equus_asinus_asinus
ENSHCOG00000014222	chd1	95	80.645	ENSELUG00000017677	chd1	94	82.668	Esox_lucius
ENSHCOG00000014222	chd1	76	88.780	ENSFHEG00000021164	chd1	89	88.807	Fundulus_heteroclitus
ENSHCOG00000014222	chd1	93	87.830	ENSGMOG00000001537	chd1	85	87.990	Gadus_morhua
ENSHCOG00000014222	chd1	99	72.877	ENSGALG00000031327	-	92	77.623	Gallus_gallus
ENSHCOG00000014222	chd1	80	90.166	ENSGAFG00000019880	chd1	87	82.083	Gambusia_affinis
ENSHCOG00000014222	chd1	91	76.356	ENSGGOG00000011463	CHD1	88	75.547	Gorilla_gorilla
ENSHCOG00000014222	chd1	95	83.258	ENSIPUG00000001369	chd1	96	83.173	Ictalurus_punctatus
ENSHCOG00000014222	chd1	55	82.095	ENSLAFG00000023183	CHD1	80	83.856	Loxodonta_africana
ENSHCOG00000014222	chd1	91	79.611	ENSMFAG00000031226	CHD1	88	79.178	Macaca_fascicularis
ENSHCOG00000014222	chd1	74	83.586	ENSMMUG00000014090	CHD1	84	82.836	Macaca_mulatta
ENSHCOG00000014222	chd1	91	79.611	ENSMNEG00000045073	CHD1	88	79.178	Macaca_nemestrina
ENSHCOG00000014222	chd1	91	75.184	ENSMLEG00000041096	CHD1	88	75.398	Mandrillus_leucophaeus
ENSHCOG00000014222	chd1	78	91.488	ENSMZEG00005010957	chd1	94	91.342	Maylandia_zebra
ENSHCOG00000014222	chd1	91	76.923	ENSMOCG00000019121	Chd1	87	76.903	Microtus_ochrogaster
ENSHCOG00000014222	chd1	76	92.345	ENSMALG00000013317	chd1	86	92.345	Monopterus_albus
ENSHCOG00000014222	chd1	91	78.782	MGP_CAROLIEiJ_G0021099	Chd1	88	78.411	Mus_caroli
ENSHCOG00000014222	chd1	91	78.849	ENSMUSG00000023852	Chd1	88	78.477	Mus_musculus
ENSHCOG00000014222	chd1	91	78.715	MGP_PahariEiJ_G0023414	Chd1	88	78.723	Mus_pahari
ENSHCOG00000014222	chd1	95	87.857	ENSNBRG00000006860	chd1	96	87.273	Neolamprologus_brichardi
ENSHCOG00000014222	chd1	91	77.548	ENSNLEG00000014493	CHD1	88	77.141	Nomascus_leucogenys
ENSHCOG00000014222	chd1	93	78.641	ENSOANG00000004891	CHD1	100	78.783	Ornithorhynchus_anatinus
ENSHCOG00000014222	chd1	55	89.379	ENSORLG00015016725	chd1	83	89.379	Oryzias_latipes_hsok
ENSHCOG00000014222	chd1	91	78.371	ENSPPAG00000043367	CHD1	89	77.888	Pan_paniscus
ENSHCOG00000014222	chd1	91	79.544	ENSPTRG00000017103	CHD1	88	78.912	Pan_troglodytes
ENSHCOG00000014222	chd1	91	79.611	ENSPANG00000006387	CHD1	88	79.178	Papio_anubis
ENSHCOG00000014222	chd1	94	77.104	ENSPKIG00000024719	chd1	92	78.010	Paramormyrops_kingsleyae
ENSHCOG00000014222	chd1	76	90.700	ENSPMGG00000005785	chd1	91	90.977	Periophthalmus_magnuspinnatus
ENSHCOG00000014222	chd1	91	78.820	ENSPEMG00000015939	Chd1	87	78.448	Peromyscus_maniculatus_bairdii
ENSHCOG00000014222	chd1	93	86.216	ENSPREG00000004209	chd1	90	86.083	Poecilia_reticulata
ENSHCOG00000014222	chd1	74	82.506	ENSRNOG00000014434	Chd1	85	82.090	Rattus_norvegicus
ENSHCOG00000014222	chd1	91	78.024	ENSRBIG00000044325	CHD1	88	77.475	Rhinopithecus_bieti
ENSHCOG00000014222	chd1	91	79.611	ENSRROG00000001726	CHD1	88	79.178	Rhinopithecus_roxellana
ENSHCOG00000014222	chd1	78	83.690	ENSSFOG00015007161	chd1	94	83.846	Scleropages_formosus
ENSHCOG00000014222	chd1	76	93.469	ENSSDUG00000018314	chd1	86	93.393	Seriola_dumerili
ENSHCOG00000014222	chd1	57	91.416	ENSSLDG00000017244	chd1	99	89.697	Seriola_lalandi_dorsalis
ENSHCOG00000014222	chd1	76	93.791	ENSSPAG00000007024	chd1	86	93.791	Stegastes_partitus
ENSHCOG00000014222	chd1	77	84.375	ENSSSCG00000014177	CHD1	87	82.815	Sus_scrofa
ENSHCOG00000014222	chd1	93	85.952	ENSTRUG00000010282	chd1	89	86.085	Takifugu_rubripes
ENSHCOG00000014222	chd1	69	89.727	ENSTNIG00000007101	chd1	85	90.545	Tetraodon_nigroviridis
ENSHCOG00000014222	chd1	93	84.327	ENSXCOG00000017184	chd1	91	84.126	Xiphophorus_couchianus
ENSHCOG00000014222	chd1	75	89.390	ENSXMAG00000014538	chd1	87	89.223	Xiphophorus_maculatus