EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000014555 (Gene tree)
Gene ID: 109520087
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 9746 bases
Position: chrKV880082.1:219874-229619
Accession: 109520087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000024854	RRM_1	PF00076.22	8.5e-07	1	1
ENSHCOP00000024865	RRM_1	PF00076.22	9.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000018460	-	1641	-	ENSHCOP00000024854	546 (aa)	-	-
ENSHCOT00000026652	-	3876	XM_019877036	ENSHCOP00000024865	576 (aa)	XP_019732595	UPI00094EC813

Gene Model

Click here to download ENSHCOG00000014555's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000014555's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000014555	cpsf6	66	72.840	ENSG00000149532	CPSF7	100	50.667	Homo_sapiens
ENSHCOG00000014555	cpsf6	81	82.564	ENSG00000111605	CPSF6	92	82.447	Homo_sapiens
ENSHCOG00000014555	cpsf6	78	39.378	ENSAOCG00000012357	CPSF7	59	51.908	Amphiprion_ocellaris
ENSHCOG00000014555	cpsf6	78	37.824	ENSAPEG00000015375	CPSF7	59	51.908	Amphiprion_percula
ENSHCOG00000014555	cpsf6	51	74.737	ENSACAG00000004381	CPSF6	52	71.228	Anolis_carolinensis
ENSHCOG00000014555	cpsf6	78	81.921	ENSANAG00000019240	CPSF6	76	82.353	Aotus_nancymaae
ENSHCOG00000014555	cpsf6	64	46.734	ENSANAG00000024635	CPSF7	72	46.286	Aotus_nancymaae
ENSHCOG00000014555	cpsf6	95	86.071	ENSACLG00000026325	cpsf6	95	86.250	Astatotilapia_calliptera
ENSHCOG00000014555	cpsf6	63	88.757	ENSAMXG00000016745	CPSF6	76	88.554	Astyanax_mexicanus
ENSHCOG00000014555	cpsf6	66	51.546	ENSBTAG00000015263	CPSF7	73	50.794	Bos_taurus
ENSHCOG00000014555	cpsf6	79	83.051	ENSCJAG00000001798	CPSF6	91	82.283	Callithrix_jacchus
ENSHCOG00000014555	cpsf6	66	72.840	ENSCJAG00000019282	CPSF7	75	58.333	Callithrix_jacchus
ENSHCOG00000014555	cpsf6	59	59.864	ENSCAFG00000016152	CPSF7	73	50.794	Canis_familiaris
ENSHCOG00000014555	cpsf6	75	80.892	ENSCAFG00000000424	CPSF6	76	82.353	Canis_familiaris
ENSHCOG00000014555	cpsf6	59	59.864	ENSCAFG00020012753	CPSF7	73	50.794	Canis_lupus_dingo
ENSHCOG00000014555	cpsf6	66	51.546	ENSCHIG00000014655	CPSF7	73	50.794	Capra_hircus
ENSHCOG00000014555	cpsf6	79	82.778	ENSTSYG00000008591	CPSF6	91	82.283	Carlito_syrichta
ENSHCOG00000014555	cpsf6	59	59.864	ENSTSYG00000010138	-	73	50.794	Carlito_syrichta
ENSHCOG00000014555	cpsf6	53	59.722	ENSCAPG00000006384	CPSF7	71	50.259	Cavia_aperea
ENSHCOG00000014555	cpsf6	58	59.722	ENSCPOG00000009980	CPSF7	73	50.259	Cavia_porcellus
ENSHCOG00000014555	cpsf6	79	83.051	ENSCCAG00000028149	CPSF6	91	81.569	Cebus_capucinus
ENSHCOG00000014555	cpsf6	59	59.184	ENSCCAG00000032367	CPSF7	73	50.265	Cebus_capucinus
ENSHCOG00000014555	cpsf6	82	82.625	ENSCATG00000039288	CPSF6	90	83.333	Cercocebus_atys
ENSHCOG00000014555	cpsf6	68	51.031	ENSCATG00000042801	CPSF7	75	50.265	Cercocebus_atys
ENSHCOG00000014555	cpsf6	58	59.722	ENSCLAG00000003174	CPSF7	73	49.741	Chinchilla_lanigera
ENSHCOG00000014555	cpsf6	68	51.031	ENSCSAG00000006414	CPSF7	75	50.265	Chlorocebus_sabaeus
ENSHCOG00000014555	cpsf6	78	82.625	ENSCANG00000037294	CPSF6	88	82.166	Colobus_angolensis_palliatus
ENSHCOG00000014555	cpsf6	59	60.544	ENSCGRG00001020382	Cpsf7	73	50.777	Cricetulus_griseus_chok1gshd
ENSHCOG00000014555	cpsf6	95	41.495	ENSCGRG00000017954	Cpsf7	75	50.777	Cricetulus_griseus_crigri
ENSHCOG00000014555	cpsf6	53	41.237	ENSCSEG00000001956	CPSF7	77	45.695	Cynoglossus_semilaevis
ENSHCOG00000014555	cpsf6	94	88.868	ENSCSEG00000008967	cpsf6	94	86.782	Cynoglossus_semilaevis
ENSHCOG00000014555	cpsf6	67	35.586	ENSCVAG00000007392	CPSF7	72	43.949	Cyprinodon_variegatus
ENSHCOG00000014555	cpsf6	95	84.107	ENSCVAG00000014857	cpsf6	94	83.525	Cyprinodon_variegatus
ENSHCOG00000014555	cpsf6	67	74.074	ENSDNOG00000018517	CPSF7	75	59.091	Dasypus_novemcinctus
ENSHCOG00000014555	cpsf6	70	79.909	ENSETEG00000002097	CPSF6	63	80.569	Echinops_telfairi
ENSHCOG00000014555	cpsf6	66	49.162	ENSETEG00000003765	CPSF7	72	53.892	Echinops_telfairi
ENSHCOG00000014555	cpsf6	59	59.864	ENSEASG00005008196	CPSF7	73	50.794	Equus_asinus_asinus
ENSHCOG00000014555	cpsf6	67	74.074	ENSECAG00000018521	CPSF7	77	59.091	Equus_caballus
ENSHCOG00000014555	cpsf6	67	74.074	ENSFCAG00000013677	CPSF7	77	59.091	Felis_catus
ENSHCOG00000014555	cpsf6	51	74.386	ENSFCAG00000002855	CPSF6	51	74.737	Felis_catus
ENSHCOG00000014555	cpsf6	88	42.916	ENSFDAG00000003919	CPSF7	73	51.323	Fukomys_damarensis
ENSHCOG00000014555	cpsf6	95	80.855	ENSFHEG00000019693	cpsf6	95	80.342	Fundulus_heteroclitus
ENSHCOG00000014555	cpsf6	54	94.220	ENSGMOG00000012951	cpsf6	53	95.798	Gadus_morhua
ENSHCOG00000014555	cpsf6	63	48.619	ENSGALG00000040962	CPSF7	63	52.874	Gallus_gallus
ENSHCOG00000014555	cpsf6	82	82.625	ENSGGOG00000008211	CPSF6	90	83.333	Gorilla_gorilla
ENSHCOG00000014555	cpsf6	95	86.250	ENSHBUG00000005998	cpsf6	94	88.123	Haplochromis_burtoni
ENSHCOG00000014555	cpsf6	61	59.722	ENSHGLG00000019090	-	75	50.777	Heterocephalus_glaber_female
ENSHCOG00000014555	cpsf6	96	48.947	ENSHGLG00100013933	-	73	50.282	Heterocephalus_glaber_male
ENSHCOG00000014555	cpsf6	59	59.864	ENSSTOG00000007708	CPSF7	73	50.259	Ictidomys_tridecemlineatus
ENSHCOG00000014555	cpsf6	61	59.864	ENSJJAG00000019390	Cpsf7	75	50.259	Jaculus_jaculus
ENSHCOG00000014555	cpsf6	54	73.231	ENSKMAG00000014794	cpsf6	95	85.484	Kryptolebias_marmoratus
ENSHCOG00000014555	cpsf6	95	86.348	ENSLBEG00000015762	cpsf6	95	88.298	Labrus_bergylta
ENSHCOG00000014555	cpsf6	57	39.310	ENSLBEG00000000947	CPSF7	69	43.709	Labrus_bergylta
ENSHCOG00000014555	cpsf6	51	76.056	ENSLACG00000008625	CPSF6	51	73.239	Latimeria_chalumnae
ENSHCOG00000014555	cpsf6	93	34.866	ENSLACG00000005542	CPSF7	69	45.513	Latimeria_chalumnae
ENSHCOG00000014555	cpsf6	67	87.940	ENSLOCG00000016190	cpsf6	64	86.228	Lepisosteus_oculatus
ENSHCOG00000014555	cpsf6	69	78.607	ENSLAFG00000030413	CPSF6	78	80.208	Loxodonta_africana
ENSHCOG00000014555	cpsf6	59	60.544	ENSLAFG00000032084	CPSF7	73	50.794	Loxodonta_africana
ENSHCOG00000014555	cpsf6	59	59.184	ENSMFAG00000001401	CPSF7	73	50.265	Macaca_fascicularis
ENSHCOG00000014555	cpsf6	82	82.625	ENSMFAG00000045318	CPSF6	90	83.333	Macaca_fascicularis
ENSHCOG00000014555	cpsf6	68	86.047	ENSMMUG00000002921	CPSF6	51	74.737	Macaca_mulatta
ENSHCOG00000014555	cpsf6	68	51.031	ENSMMUG00000015280	CPSF7	75	50.265	Macaca_mulatta
ENSHCOG00000014555	cpsf6	68	51.031	ENSMNEG00000029585	CPSF7	75	50.265	Macaca_nemestrina
ENSHCOG00000014555	cpsf6	82	82.171	ENSMNEG00000036311	CPSF6	90	83.333	Macaca_nemestrina
ENSHCOG00000014555	cpsf6	66	51.031	ENSMLEG00000031269	CPSF7	71	50.265	Mandrillus_leucophaeus
ENSHCOG00000014555	cpsf6	78	82.625	ENSMLEG00000003957	CPSF6	88	82.166	Mandrillus_leucophaeus
ENSHCOG00000014555	cpsf6	53	86.250	ENSMAMG00000010385	cpsf6	94	87.356	Mastacembelus_armatus
ENSHCOG00000014555	cpsf6	95	86.250	ENSMZEG00005007975	cpsf6	94	88.123	Maylandia_zebra
ENSHCOG00000014555	cpsf6	95	39.267	ENSMGAG00000004876	CPSF7	62	57.738	Meleagris_gallopavo
ENSHCOG00000014555	cpsf6	59	59.864	ENSMAUG00000013020	Cpsf7	73	50.259	Mesocricetus_auratus
ENSHCOG00000014555	cpsf6	82	82.171	ENSMICG00000007385	-	90	83.333	Microcebus_murinus
ENSHCOG00000014555	cpsf6	59	59.864	ENSMICG00000013788	CPSF7	73	50.794	Microcebus_murinus
ENSHCOG00000014555	cpsf6	59	59.864	ENSMOCG00000000072	Cpsf7	73	50.259	Microtus_ochrogaster
ENSHCOG00000014555	cpsf6	66	50.761	ENSMODG00000020364	CPSF7	65	58.333	Monodelphis_domestica
ENSHCOG00000014555	cpsf6	75	91.753	ENSMALG00000014908	cpsf6	75	91.813	Monopterus_albus
ENSHCOG00000014555	cpsf6	59	59.864	MGP_CAROLIEiJ_G0022690	Cpsf7	73	50.259	Mus_caroli
ENSHCOG00000014555	cpsf6	59	59.864	ENSMUSG00000034820	Cpsf7	73	50.259	Mus_musculus
ENSHCOG00000014555	cpsf6	59	59.864	MGP_PahariEiJ_G0014184	Cpsf7	73	50.259	Mus_pahari
ENSHCOG00000014555	cpsf6	59	59.864	MGP_SPRETEiJ_G0023604	Cpsf7	73	50.259	Mus_spretus
ENSHCOG00000014555	cpsf6	54	59.184	ENSMPUG00000014163	CPSF7	70	49.735	Mustela_putorius_furo
ENSHCOG00000014555	cpsf6	68	51.546	ENSMLUG00000013278	CPSF7	75	50.794	Myotis_lucifugus
ENSHCOG00000014555	cpsf6	75	82.734	ENSMLUG00000028728	-	85	83.448	Myotis_lucifugus
ENSHCOG00000014555	cpsf6	78	71.635	ENSMLUG00000023960	-	77	69.061	Myotis_lucifugus
ENSHCOG00000014555	cpsf6	66	51.546	ENSNGAG00000005031	Cpsf7	73	50.259	Nannospalax_galili
ENSHCOG00000014555	cpsf6	82	82.171	ENSNLEG00000003798	CPSF6	90	83.333	Nomascus_leucogenys
ENSHCOG00000014555	cpsf6	59	59.184	ENSNLEG00000002529	CPSF7	67	50.265	Nomascus_leucogenys
ENSHCOG00000014555	cpsf6	66	51.546	ENSMEUG00000002261	CPSF7	73	50.259	Notamacropus_eugenii
ENSHCOG00000014555	cpsf6	71	86.782	ENSODEG00000004418	-	82	86.111	Octodon_degus
ENSHCOG00000014555	cpsf6	58	55.782	ENSODEG00000002610	CPSF7	74	50.000	Octodon_degus
ENSHCOG00000014555	cpsf6	79	64.238	ENSODEG00000007109	-	66	63.522	Octodon_degus
ENSHCOG00000014555	cpsf6	95	86.225	ENSONIG00000011702	cpsf6	94	90.038	Oreochromis_niloticus
ENSHCOG00000014555	cpsf6	88	43.927	ENSOCUG00000024726	CPSF7	74	49.741	Oryctolagus_cuniculus
ENSHCOG00000014555	cpsf6	51	82.007	ENSORLG00000013893	cpsf6	52	82.007	Oryzias_latipes
ENSHCOG00000014555	cpsf6	76	34.505	ENSORLG00000006495	CPSF7	54	51.852	Oryzias_latipes
ENSHCOG00000014555	cpsf6	76	34.505	ENSORLG00020012657	CPSF7	54	51.852	Oryzias_latipes_hni
ENSHCOG00000014555	cpsf6	51	82.007	ENSORLG00020016593	cpsf6	52	82.007	Oryzias_latipes_hni
ENSHCOG00000014555	cpsf6	51	82.007	ENSORLG00015015558	cpsf6	52	82.007	Oryzias_latipes_hsok
ENSHCOG00000014555	cpsf6	76	34.505	ENSORLG00015011091	CPSF7	54	50.926	Oryzias_latipes_hsok
ENSHCOG00000014555	cpsf6	70	37.768	ENSOMEG00000000539	CPSF7	62	46.875	Oryzias_melastigma
ENSHCOG00000014555	cpsf6	59	59.864	ENSOGAG00000027958	CPSF7	68	50.794	Otolemur_garnettii
ENSHCOG00000014555	cpsf6	95	36.333	ENSOARG00000012937	CPSF7	66	49.718	Ovis_aries
ENSHCOG00000014555	cpsf6	66	51.031	ENSPPAG00000028232	CPSF7	71	50.265	Pan_paniscus
ENSHCOG00000014555	cpsf6	51	74.386	ENSPPRG00000021620	CPSF6	51	74.737	Panthera_pardus
ENSHCOG00000014555	cpsf6	95	39.665	ENSPPRG00000008538	CPSF7	71	50.562	Panthera_pardus
ENSHCOG00000014555	cpsf6	59	59.864	ENSPTIG00000021699	CPSF7	73	50.794	Panthera_tigris_altaica
ENSHCOG00000014555	cpsf6	82	82.625	ENSPTRG00000005205	CPSF6	90	83.333	Pan_troglodytes
ENSHCOG00000014555	cpsf6	59	59.184	ENSPTRG00000003742	CPSF7	73	50.265	Pan_troglodytes
ENSHCOG00000014555	cpsf6	82	82.625	ENSPANG00000011641	CPSF6	90	83.333	Papio_anubis
ENSHCOG00000014555	cpsf6	59	59.184	ENSPANG00000006037	CPSF7	69	50.265	Papio_anubis
ENSHCOG00000014555	cpsf6	51	78.246	ENSPKIG00000003081	-	52	76.573	Paramormyrops_kingsleyae
ENSHCOG00000014555	cpsf6	51	83.624	ENSPKIG00000022613	CPSF6	52	78.472	Paramormyrops_kingsleyae
ENSHCOG00000014555	cpsf6	61	46.369	ENSPKIG00000018054	CPSF7	73	48.718	Paramormyrops_kingsleyae
ENSHCOG00000014555	cpsf6	61	59.864	ENSPEMG00000012648	Cpsf7	75	50.259	Peromyscus_maniculatus_bairdii
ENSHCOG00000014555	cpsf6	66	50.761	ENSPCIG00000002551	CPSF7	73	58.647	Phascolarctos_cinereus
ENSHCOG00000014555	cpsf6	83	93.229	ENSPFOG00000006990	cpsf6	91	93.200	Poecilia_formosa
ENSHCOG00000014555	cpsf6	95	86.607	ENSPLAG00000005715	cpsf6	95	84.643	Poecilia_latipinna
ENSHCOG00000014555	cpsf6	95	86.607	ENSPMEG00000001353	cpsf6	95	84.643	Poecilia_mexicana
ENSHCOG00000014555	cpsf6	95	86.607	ENSPREG00000004417	cpsf6	95	84.643	Poecilia_reticulata
ENSHCOG00000014555	cpsf6	51	74.386	ENSPPYG00000004756	CPSF6	51	74.737	Pongo_abelii
ENSHCOG00000014555	cpsf6	59	59.184	ENSPPYG00000003188	CPSF7	73	50.265	Pongo_abelii
ENSHCOG00000014555	cpsf6	79	83.051	ENSPCOG00000024384	CPSF6	91	81.569	Propithecus_coquereli
ENSHCOG00000014555	cpsf6	59	59.864	ENSPCOG00000011976	CPSF7	73	50.794	Propithecus_coquereli
ENSHCOG00000014555	cpsf6	59	59.864	ENSPVAG00000010675	CPSF7	73	50.794	Pteropus_vampyrus
ENSHCOG00000014555	cpsf6	95	86.250	ENSPNYG00000020315	cpsf6	95	86.429	Pundamilia_nyererei
ENSHCOG00000014555	cpsf6	60	46.452	ENSPNAG00000015073	CPSF7	67	46.061	Pygocentrus_nattereri
ENSHCOG00000014555	cpsf6	61	59.864	ENSRNOG00000020668	Cpsf7	75	50.259	Rattus_norvegicus
ENSHCOG00000014555	cpsf6	66	72.840	ENSRBIG00000031429	CPSF7	77	58.333	Rhinopithecus_bieti
ENSHCOG00000014555	cpsf6	82	82.625	ENSRBIG00000042827	CPSF6	90	83.333	Rhinopithecus_bieti
ENSHCOG00000014555	cpsf6	82	82.171	ENSRROG00000042758	CPSF6	90	83.333	Rhinopithecus_roxellana
ENSHCOG00000014555	cpsf6	59	59.184	ENSRROG00000045009	CPSF7	73	50.265	Rhinopithecus_roxellana
ENSHCOG00000014555	cpsf6	78	82.625	ENSSBOG00000010652	CPSF6	89	82.166	Saimiri_boliviensis_boliviensis
ENSHCOG00000014555	cpsf6	59	59.184	ENSSBOG00000018431	CPSF7	73	50.265	Saimiri_boliviensis_boliviensis
ENSHCOG00000014555	cpsf6	63	51.546	ENSSHAG00000011964	CPSF7	71	50.259	Sarcophilus_harrisii
ENSHCOG00000014555	cpsf6	52	76.655	ENSSFOG00015015803	CPSF6	51	75.088	Scleropages_formosus
ENSHCOG00000014555	cpsf6	96	40.404	ENSSFOG00015010288	cpsf7	68	46.043	Scleropages_formosus
ENSHCOG00000014555	cpsf6	95	84.409	ENSSMAG00000000471	cpsf6	95	86.559	Scophthalmus_maximus
ENSHCOG00000014555	cpsf6	95	85.510	ENSSDUG00000005024	cpsf6	95	86.607	Seriola_dumerili
ENSHCOG00000014555	cpsf6	95	85.510	ENSSLDG00000009042	cpsf6	95	86.607	Seriola_lalandi_dorsalis
ENSHCOG00000014555	cpsf6	86	83.922	ENSSARG00000006743	CPSF6	78	86.220	Sorex_araneus
ENSHCOG00000014555	cpsf6	66	49.490	ENSSPUG00000019344	CPSF7	73	51.412	Sphenodon_punctatus
ENSHCOG00000014555	cpsf6	95	84.973	ENSSPAG00000013906	cpsf6	95	86.071	Stegastes_partitus
ENSHCOG00000014555	cpsf6	67	74.074	ENSSSCG00000013083	CPSF7	75	59.091	Sus_scrofa
ENSHCOG00000014555	cpsf6	63	51.955	ENSTGUG00000006513	CPSF7	71	51.744	Taeniopygia_guttata
ENSHCOG00000014555	cpsf6	54	59.184	ENSTTRG00000011085	CPSF7	71	50.794	Tursiops_truncatus
ENSHCOG00000014555	cpsf6	59	59.864	ENSUAMG00000017809	CPSF7	73	50.794	Ursus_americanus
ENSHCOG00000014555	cpsf6	58	86.667	ENSUMAG00000020779	CPSF6	70	87.879	Ursus_maritimus
ENSHCOG00000014555	cpsf6	61	59.864	ENSUMAG00000011825	CPSF7	75	50.794	Ursus_maritimus
ENSHCOG00000014555	cpsf6	67	74.074	ENSVVUG00000004939	CPSF7	75	59.091	Vulpes_vulpes
ENSHCOG00000014555	cpsf6	97	42.435	ENSXETG00000006715	cpsf7	65	47.753	Xenopus_tropicalis
ENSHCOG00000014555	cpsf6	52	79.239	ENSXCOG00000013423	cpsf6	52	80.836	Xiphophorus_couchianus
ENSHCOG00000014555	cpsf6	95	86.429	ENSXMAG00000003459	cpsf6	95	84.464	Xiphophorus_maculatus