EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000014589 (Gene tree)
Gene ID: 109526691
Gene Symbol: c1d
Alias: zgc:103509
Full Name: nuclear nucleic acid-binding protein C1D-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4026 bases
Position: chrKV880264.1:475729-479754
Accession: 109526691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000011703	Sas10_Utp3	PF04000.15	1e-16	1	1
ENSHCOP00000011714	Sas10_Utp3	PF04000.15	1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000018514	-	444	XM_019888131	ENSHCOP00000011703	147 (aa)	XP_019743690	UPI00094F1910
ENSHCOT00000018525	-	444	XM_019888133	ENSHCOP00000011714	147 (aa)	XP_019743692	UPI00094F1910

Gene Model

Click here to download ENSHCOG00000014589's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000014589's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000014589	c1d	100	100.000	ENSHCOG00000014568	C1D	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000014589	c1d	89	63.359	ENSG00000197223	C1D	91	63.359	Homo_sapiens
ENSHCOG00000014589	c1d	98	72.973	ENSAPOG00000005466	c1d	93	76.812	Acanthochromis_polyacanthus
ENSHCOG00000014589	c1d	90	62.121	ENSAMEG00000004859	C1D	90	62.121	Ailuropoda_melanoleuca
ENSHCOG00000014589	c1d	87	80.469	ENSACIG00000012684	c1d	83	80.469	Amphilophus_citrinellus
ENSHCOG00000014589	c1d	99	71.141	ENSAOCG00000020354	c1d	96	72.340	Amphiprion_ocellaris
ENSHCOG00000014589	c1d	99	70.470	ENSAPEG00000001403	c1d	97	70.470	Amphiprion_percula
ENSHCOG00000014589	c1d	98	71.622	ENSATEG00000012922	c1d	95	71.622	Anabas_testudineus
ENSHCOG00000014589	c1d	81	68.067	ENSAPLG00000009320	C1D	82	68.067	Anas_platyrhynchos
ENSHCOG00000014589	c1d	83	68.852	ENSACAG00000001337	C1D	97	71.186	Anolis_carolinensis
ENSHCOG00000014589	c1d	89	64.122	ENSANAG00000035972	-	91	64.122	Aotus_nancymaae
ENSHCOG00000014589	c1d	89	61.069	ENSANAG00000005773	-	91	61.069	Aotus_nancymaae
ENSHCOG00000014589	c1d	97	72.222	ENSACLG00000026206	c1d	94	76.761	Astatotilapia_calliptera
ENSHCOG00000014589	c1d	88	69.767	ENSAMXG00000043212	c1d	88	69.767	Astyanax_mexicanus
ENSHCOG00000014589	c1d	91	61.194	ENSBTAG00000049002	C1D	95	61.194	Bos_taurus
ENSHCOG00000014589	c1d	74	60.550	ENSCJAG00000044668	-	70	64.444	Callithrix_jacchus
ENSHCOG00000014589	c1d	93	60.294	ENSCJAG00000006589	C1D	89	60.294	Callithrix_jacchus
ENSHCOG00000014589	c1d	91	62.687	ENSCAFG00000030099	C1D	95	62.687	Canis_familiaris
ENSHCOG00000014589	c1d	91	62.687	ENSCAFG00020026997	C1D	95	62.687	Canis_lupus_dingo
ENSHCOG00000014589	c1d	91	61.194	ENSCHIG00000025729	C1D	95	61.194	Capra_hircus
ENSHCOG00000014589	c1d	91	61.194	ENSTSYG00000035739	-	95	61.194	Carlito_syrichta
ENSHCOG00000014589	c1d	74	63.303	ENSTSYG00000026573	-	69	63.303	Carlito_syrichta
ENSHCOG00000014589	c1d	74	58.716	ENSCAPG00000011523	-	95	57.018	Cavia_aperea
ENSHCOG00000014589	c1d	78	58.772	ENSCPOG00000020112	-	95	58.772	Cavia_porcellus
ENSHCOG00000014589	c1d	89	64.122	ENSCPOG00000037986	-	91	64.122	Cavia_porcellus
ENSHCOG00000014589	c1d	89	63.359	ENSCCAG00000030405	-	91	63.359	Cebus_capucinus
ENSHCOG00000014589	c1d	89	61.069	ENSCATG00000043348	-	91	61.069	Cercocebus_atys
ENSHCOG00000014589	c1d	89	62.595	ENSCATG00000045336	C1D	91	62.595	Cercocebus_atys
ENSHCOG00000014589	c1d	92	60.741	ENSCLAG00000011883	C1D	96	60.741	Chinchilla_lanigera
ENSHCOG00000014589	c1d	91	61.940	ENSCSAG00000014811	C1D	94	61.940	Chlorocebus_sabaeus
ENSHCOG00000014589	c1d	91	61.194	ENSCHOG00000006719	C1D	75	61.194	Choloepus_hoffmanni
ENSHCOG00000014589	c1d	91	61.194	ENSCPBG00000014451	C1D	91	61.194	Chrysemys_picta_bellii
ENSHCOG00000014589	c1d	81	45.378	ENSCING00000020906	-	65	45.968	Ciona_intestinalis
ENSHCOG00000014589	c1d	82	46.667	ENSCSAVG00000000150	-	69	46.667	Ciona_savignyi
ENSHCOG00000014589	c1d	89	62.595	ENSCANG00000035564	C1D	91	62.595	Colobus_angolensis_palliatus
ENSHCOG00000014589	c1d	68	63.000	ENSCANG00000036599	-	73	63.333	Colobus_angolensis_palliatus
ENSHCOG00000014589	c1d	92	61.481	ENSCGRG00001023376	C1d	89	61.481	Cricetulus_griseus_chok1gshd
ENSHCOG00000014589	c1d	92	61.481	ENSCGRG00000010245	C1d	89	61.481	Cricetulus_griseus_crigri
ENSHCOG00000014589	c1d	96	68.243	ENSCSEG00000000587	c1d	92	74.046	Cynoglossus_semilaevis
ENSHCOG00000014589	c1d	99	68.919	ENSCVAG00000004603	c1d	97	69.388	Cyprinodon_variegatus
ENSHCOG00000014589	c1d	80	64.407	ENSDARG00000021112	c1d	87	62.791	Danio_rerio
ENSHCOG00000014589	c1d	91	53.731	ENSDNOG00000046068	-	95	53.731	Dasypus_novemcinctus
ENSHCOG00000014589	c1d	91	60.448	ENSDORG00000003300	C1d	95	60.448	Dipodomys_ordii
ENSHCOG00000014589	c1d	63	66.667	ENSETEG00000014857	C1D	98	66.667	Echinops_telfairi
ENSHCOG00000014589	c1d	82	50.413	ENSEBUG00000006874	c1d	76	50.413	Eptatretus_burgeri
ENSHCOG00000014589	c1d	91	61.194	ENSEASG00005007307	C1D	87	61.194	Equus_asinus_asinus
ENSHCOG00000014589	c1d	93	61.765	ENSECAG00000002187	C1D	92	63.359	Equus_caballus
ENSHCOG00000014589	c1d	86	74.803	ENSELUG00000014823	c1d	87	74.803	Esox_lucius
ENSHCOG00000014589	c1d	91	61.194	ENSFCAG00000028933	C1D	95	61.194	Felis_catus
ENSHCOG00000014589	c1d	89	61.940	ENSFALG00000013640	C1D	81	61.940	Ficedula_albicollis
ENSHCOG00000014589	c1d	91	61.194	ENSFDAG00000010462	-	95	61.194	Fukomys_damarensis
ENSHCOG00000014589	c1d	91	51.111	ENSFDAG00000014175	-	89	58.716	Fukomys_damarensis
ENSHCOG00000014589	c1d	98	71.429	ENSFHEG00000010545	c1d	95	71.429	Fundulus_heteroclitus
ENSHCOG00000014589	c1d	82	74.380	ENSGMOG00000013911	-	96	74.380	Gadus_morhua
ENSHCOG00000014589	c1d	81	68.067	ENSGALG00000008765	C1D	83	68.067	Gallus_gallus
ENSHCOG00000014589	c1d	99	70.861	ENSGAFG00000012578	c1d	96	70.861	Gambusia_affinis
ENSHCOG00000014589	c1d	84	74.219	ENSGACG00000011981	c1d	100	74.219	Gasterosteus_aculeatus
ENSHCOG00000014589	c1d	82	65.000	ENSGAGG00000013383	C1D	81	65.000	Gopherus_agassizii
ENSHCOG00000014589	c1d	88	63.566	ENSGGOG00000022296	-	90	63.566	Gorilla_gorilla
ENSHCOG00000014589	c1d	91	61.194	ENSGGOG00000025982	-	74	61.194	Gorilla_gorilla
ENSHCOG00000014589	c1d	86	60.630	ENSGGOG00000025808	-	73	60.630	Gorilla_gorilla
ENSHCOG00000014589	c1d	99	72.297	ENSHBUG00000018531	c1d	87	76.712	Haplochromis_burtoni
ENSHCOG00000014589	c1d	89	54.962	ENSHGLG00000021219	-	96	54.348	Heterocephalus_glaber_female
ENSHCOG00000014589	c1d	82	64.463	ENSHGLG00000012332	-	91	62.595	Heterocephalus_glaber_female
ENSHCOG00000014589	c1d	91	61.194	ENSHGLG00100000221	-	95	61.194	Heterocephalus_glaber_male
ENSHCOG00000014589	c1d	89	55.725	ENSHGLG00100019951	-	95	53.731	Heterocephalus_glaber_male
ENSHCOG00000014589	c1d	82	64.167	ENSIPUG00000018661	c1d	83	64.167	Ictalurus_punctatus
ENSHCOG00000014589	c1d	91	62.687	ENSSTOG00000012346	C1D	94	62.687	Ictidomys_tridecemlineatus
ENSHCOG00000014589	c1d	80	61.983	ENSJJAG00000023186	-	92	61.983	Jaculus_jaculus
ENSHCOG00000014589	c1d	86	58.730	ENSJJAG00000005044	-	91	58.730	Jaculus_jaculus
ENSHCOG00000014589	c1d	86	52.381	ENSJJAG00000016086	-	90	52.381	Jaculus_jaculus
ENSHCOG00000014589	c1d	88	59.690	ENSJJAG00000009540	-	93	59.690	Jaculus_jaculus
ENSHCOG00000014589	c1d	99	72.483	ENSKMAG00000015077	c1d	97	72.483	Kryptolebias_marmoratus
ENSHCOG00000014589	c1d	99	72.483	ENSLBEG00000008351	c1d	96	72.483	Labrus_bergylta
ENSHCOG00000014589	c1d	98	59.028	ENSLACG00000007516	C1D	92	59.028	Latimeria_chalumnae
ENSHCOG00000014589	c1d	86	66.142	ENSLOCG00000016024	c1d	86	66.142	Lepisosteus_oculatus
ENSHCOG00000014589	c1d	91	61.940	ENSLAFG00000002083	C1D	95	61.940	Loxodonta_africana
ENSHCOG00000014589	c1d	89	62.595	ENSMFAG00000034261	C1D	91	62.595	Macaca_fascicularis
ENSHCOG00000014589	c1d	89	61.069	ENSMFAG00000028681	-	91	61.069	Macaca_fascicularis
ENSHCOG00000014589	c1d	89	61.069	ENSMFAG00000034034	-	91	61.069	Macaca_fascicularis
ENSHCOG00000014589	c1d	89	62.595	ENSMMUG00000041557	C1D	93	62.595	Macaca_mulatta
ENSHCOG00000014589	c1d	89	60.305	ENSMMUG00000043184	-	91	60.305	Macaca_mulatta
ENSHCOG00000014589	c1d	89	61.069	ENSMMUG00000017209	-	91	61.069	Macaca_mulatta
ENSHCOG00000014589	c1d	89	62.595	ENSMNEG00000040612	C1D	91	62.595	Macaca_nemestrina
ENSHCOG00000014589	c1d	89	61.069	ENSMNEG00000020626	-	91	61.069	Macaca_nemestrina
ENSHCOG00000014589	c1d	89	62.595	ENSMLEG00000027619	C1D	91	62.595	Mandrillus_leucophaeus
ENSHCOG00000014589	c1d	89	61.069	ENSMLEG00000028412	-	91	61.069	Mandrillus_leucophaeus
ENSHCOG00000014589	c1d	99	67.763	ENSMAMG00000022156	c1d	95	69.595	Mastacembelus_armatus
ENSHCOG00000014589	c1d	99	72.297	ENSMZEG00005027343	c1d	99	76.712	Maylandia_zebra
ENSHCOG00000014589	c1d	91	62.687	ENSMGAG00000004517	C1D	94	62.687	Meleagris_gallopavo
ENSHCOG00000014589	c1d	90	61.364	ENSMAUG00000008974	C1d	94	61.364	Mesocricetus_auratus
ENSHCOG00000014589	c1d	91	61.940	ENSMICG00000032141	C1D	95	61.940	Microcebus_murinus
ENSHCOG00000014589	c1d	93	61.314	ENSMOCG00000010860	C1d	91	61.314	Microtus_ochrogaster
ENSHCOG00000014589	c1d	99	71.333	ENSMMOG00000007332	c1d	97	71.333	Mola_mola
ENSHCOG00000014589	c1d	86	64.567	ENSMODG00000003561	C1D	89	64.567	Monodelphis_domestica
ENSHCOG00000014589	c1d	99	77.241	ENSMALG00000020864	c1d	91	82.353	Monopterus_albus
ENSHCOG00000014589	c1d	89	63.359	MGP_CAROLIEiJ_G0016110	C1d	94	65.766	Mus_caroli
ENSHCOG00000014589	c1d	89	63.359	ENSMUSG00000000581	C1d	94	65.766	Mus_musculus
ENSHCOG00000014589	c1d	90	62.121	MGP_PahariEiJ_G0016781	C1d	94	66.667	Mus_pahari
ENSHCOG00000014589	c1d	89	63.359	MGP_SPRETEiJ_G0016952	C1d	94	65.766	Mus_spretus
ENSHCOG00000014589	c1d	91	61.940	ENSMPUG00000006224	C1D	95	61.940	Mustela_putorius_furo
ENSHCOG00000014589	c1d	90	59.848	ENSMLUG00000029990	-	94	59.848	Myotis_lucifugus
ENSHCOG00000014589	c1d	90	62.879	ENSMLUG00000010791	-	94	62.879	Myotis_lucifugus
ENSHCOG00000014589	c1d	90	61.364	ENSMLUG00000024947	-	94	61.364	Myotis_lucifugus
ENSHCOG00000014589	c1d	91	58.209	ENSNGAG00000016675	-	95	58.209	Nannospalax_galili
ENSHCOG00000014589	c1d	89	61.832	ENSNGAG00000011872	-	91	61.832	Nannospalax_galili
ENSHCOG00000014589	c1d	84	58.065	ENSNGAG00000012482	-	98	58.065	Nannospalax_galili
ENSHCOG00000014589	c1d	99	70.946	ENSNBRG00000010704	c1d	99	75.342	Neolamprologus_brichardi
ENSHCOG00000014589	c1d	91	62.687	ENSNLEG00000032919	-	73	62.687	Nomascus_leucogenys
ENSHCOG00000014589	c1d	91	62.687	ENSOPRG00000009586	C1D	94	62.687	Ochotona_princeps
ENSHCOG00000014589	c1d	78	58.772	ENSODEG00000018525	-	81	58.772	Octodon_degus
ENSHCOG00000014589	c1d	89	62.595	ENSODEG00000011242	-	91	62.595	Octodon_degus
ENSHCOG00000014589	c1d	89	62.595	ENSODEG00000018885	-	93	62.595	Octodon_degus
ENSHCOG00000014589	c1d	99	76.552	ENSONIG00000001233	c1d	96	76.552	Oreochromis_niloticus
ENSHCOG00000014589	c1d	65	74.737	ENSOANG00000008385	C1D	94	69.231	Ornithorhynchus_anatinus
ENSHCOG00000014589	c1d	91	63.433	ENSOCUG00000009771	-	94	63.433	Oryctolagus_cuniculus
ENSHCOG00000014589	c1d	91	63.433	ENSOCUG00000025587	-	94	63.433	Oryctolagus_cuniculus
ENSHCOG00000014589	c1d	97	70.629	ENSORLG00000021968	c1d	92	70.629	Oryzias_latipes
ENSHCOG00000014589	c1d	97	69.930	ENSORLG00020000507	c1d	93	69.930	Oryzias_latipes_hni
ENSHCOG00000014589	c1d	97	69.930	ENSORLG00015004594	c1d	91	69.930	Oryzias_latipes_hsok
ENSHCOG00000014589	c1d	97	71.429	ENSOMEG00000004672	c1d	94	71.429	Oryzias_melastigma
ENSHCOG00000014589	c1d	91	61.194	ENSOGAG00000027934	-	94	61.194	Otolemur_garnettii
ENSHCOG00000014589	c1d	91	61.194	ENSOARG00000019931	C1D	94	61.194	Ovis_aries
ENSHCOG00000014589	c1d	89	63.359	ENSPPAG00000037847	-	91	63.359	Pan_paniscus
ENSHCOG00000014589	c1d	90	59.091	ENSPPAG00000040091	-	76	59.091	Pan_paniscus
ENSHCOG00000014589	c1d	60	56.818	ENSPPRG00000022830	-	75	56.818	Panthera_pardus
ENSHCOG00000014589	c1d	91	61.194	ENSPPRG00000017045	-	95	61.194	Panthera_pardus
ENSHCOG00000014589	c1d	91	61.194	ENSPTIG00000009414	C1D	95	61.194	Panthera_tigris_altaica
ENSHCOG00000014589	c1d	89	63.359	ENSPTRG00000023558	C1D	91	63.359	Pan_troglodytes
ENSHCOG00000014589	c1d	89	61.069	ENSPANG00000000501	-	91	61.069	Papio_anubis
ENSHCOG00000014589	c1d	89	62.595	ENSPANG00000002886	C1D	72	62.595	Papio_anubis
ENSHCOG00000014589	c1d	98	59.722	ENSPKIG00000004877	c1d	93	59.722	Paramormyrops_kingsleyae
ENSHCOG00000014589	c1d	82	66.667	ENSPSIG00000010015	C1D	83	66.667	Pelodiscus_sinensis
ENSHCOG00000014589	c1d	82	81.818	ENSPMGG00000009326	c1d	85	78.626	Periophthalmus_magnuspinnatus
ENSHCOG00000014589	c1d	86	63.281	ENSPCIG00000018629	-	90	63.281	Phascolarctos_cinereus
ENSHCOG00000014589	c1d	86	58.915	ENSPCIG00000006831	-	89	58.915	Phascolarctos_cinereus
ENSHCOG00000014589	c1d	99	72.185	ENSPFOG00000003686	c1d	97	72.185	Poecilia_formosa
ENSHCOG00000014589	c1d	99	72.185	ENSPLAG00000000228	c1d	91	78.295	Poecilia_latipinna
ENSHCOG00000014589	c1d	99	72.185	ENSPMEG00000023213	c1d	97	72.185	Poecilia_mexicana
ENSHCOG00000014589	c1d	98	72.109	ENSPREG00000000742	c1d	96	75.182	Poecilia_reticulata
ENSHCOG00000014589	c1d	89	63.359	ENSPPYG00000012354	C1D	71	63.359	Pongo_abelii
ENSHCOG00000014589	c1d	90	58.333	ENSPPYG00000002294	-	94	58.333	Pongo_abelii
ENSHCOG00000014589	c1d	91	50.000	ENSPCAG00000010088	C1D	75	50.000	Procavia_capensis
ENSHCOG00000014589	c1d	91	61.940	ENSPCOG00000016112	C1D	95	61.940	Propithecus_coquereli
ENSHCOG00000014589	c1d	91	61.194	ENSPVAG00000012692	C1D	75	61.194	Pteropus_vampyrus
ENSHCOG00000014589	c1d	81	82.353	ENSPNYG00000008789	c1d	99	76.712	Pundamilia_nyererei
ENSHCOG00000014589	c1d	85	72.000	ENSPNAG00000004219	c1d	86	72.000	Pygocentrus_nattereri
ENSHCOG00000014589	c1d	89	64.885	ENSRNOG00000005982	C1d	91	64.885	Rattus_norvegicus
ENSHCOG00000014589	c1d	89	60.305	ENSRBIG00000026211	-	91	60.305	Rhinopithecus_bieti
ENSHCOG00000014589	c1d	89	62.595	ENSRROG00000029013	C1D	91	62.595	Rhinopithecus_roxellana
ENSHCOG00000014589	c1d	89	61.069	ENSRROG00000005944	-	91	61.069	Rhinopithecus_roxellana
ENSHCOG00000014589	c1d	89	63.359	ENSSBOG00000025275	C1D	91	63.359	Saimiri_boliviensis_boliviensis
ENSHCOG00000014589	c1d	91	61.194	ENSSHAG00000008352	C1D	63	61.194	Sarcophilus_harrisii
ENSHCOG00000014589	c1d	83	63.115	ENSSFOG00015010861	c1d	87	63.115	Scleropages_formosus
ENSHCOG00000014589	c1d	100	72.185	ENSSMAG00000019230	c1d	97	72.185	Scophthalmus_maximus
ENSHCOG00000014589	c1d	100	74.834	ENSSDUG00000020213	c1d	97	74.342	Seriola_dumerili
ENSHCOG00000014589	c1d	100	74.172	ENSSLDG00000017371	c1d	97	74.172	Seriola_lalandi_dorsalis
ENSHCOG00000014589	c1d	82	64.463	ENSSPUG00000006525	C1D	90	60.294	Sphenodon_punctatus
ENSHCOG00000014589	c1d	97	74.830	ENSSPAG00000008574	c1d	94	76.712	Stegastes_partitus
ENSHCOG00000014589	c1d	72	54.717	ENSSSCG00000035701	-	93	52.679	Sus_scrofa
ENSHCOG00000014589	c1d	91	61.194	ENSSSCG00000039331	-	95	61.194	Sus_scrofa
ENSHCOG00000014589	c1d	80	67.797	ENSTGUG00000002367	C1D	82	67.797	Taeniopygia_guttata
ENSHCOG00000014589	c1d	97	68.531	ENSTRUG00000012245	c1d	86	68.531	Takifugu_rubripes
ENSHCOG00000014589	c1d	90	74.436	ENSTNIG00000009827	c1d	90	74.436	Tetraodon_nigroviridis
ENSHCOG00000014589	c1d	91	60.448	ENSTBEG00000009797	C1D	95	60.448	Tupaia_belangeri
ENSHCOG00000014589	c1d	89	61.832	ENSTTRG00000013982	C1D	74	61.832	Tursiops_truncatus
ENSHCOG00000014589	c1d	82	55.645	ENSUAMG00000025246	C1D	93	55.645	Ursus_americanus
ENSHCOG00000014589	c1d	91	61.194	ENSUMAG00000021118	-	95	61.194	Ursus_maritimus
ENSHCOG00000014589	c1d	64	51.546	ENSUMAG00000006451	-	72	52.174	Ursus_maritimus
ENSHCOG00000014589	c1d	91	62.687	ENSVPAG00000012080	C1D	75	62.687	Vicugna_pacos
ENSHCOG00000014589	c1d	91	62.687	ENSVVUG00000027629	C1D	84	62.687	Vulpes_vulpes
ENSHCOG00000014589	c1d	81	63.025	ENSXETG00000025934	c1d	81	63.559	Xenopus_tropicalis
ENSHCOG00000014589	c1d	99	71.812	ENSXCOG00000013813	c1d	95	72.483	Xiphophorus_couchianus
ENSHCOG00000014589	c1d	99	71.141	ENSXMAG00000022273	c1d	95	71.812	Xiphophorus_maculatus