EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000014770 (Gene tree)
Gene ID: 109507706
Gene Symbol: trnau1apa
Alias: trnau1ap|zgc:110606
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 5013 bases
Position: chrKV880485.1:911709-916721
Accession: 109507706
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000011839	RRM_1	PF00076.22	1.9e-23	1	2
ENSHCOP00000011839	RRM_1	PF00076.22	1.9e-23	2	2
ENSHCOP00000011844	RRM_1	PF00076.22	1.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000018704	-	1444	XM_019857320	ENSHCOP00000011839	309 (aa)	XP_019712879	UPI00094EA55B
ENSHCOT00000018696	-	1327	XM_019857321	ENSHCOP00000011844	270 (aa)	XP_019712880	UPI00094ED7C6

Gene Model

Click here to download ENSHCOG00000014770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000014770's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000014770	trnau1apa	56	30.899	ENSHCOG00000005356	-	59	30.899
ENSHCOG00000014770	trnau1apa	57	30.387	ENSHCOG00000004701	tial1	58	30.556
ENSHCOG00000014770	trnau1apa	72	48.230	ENSHCOG00000011350	trnau1apb	70	48.230

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000014770	trnau1apa	97	55.195	ENSG00000180098	TRNAU1AP	99	57.096	Homo_sapiens
ENSHCOG00000014770	trnau1apa	99	70.927	ENSAPOG00000007148	TRNAU1AP	99	73.163	Acanthochromis_polyacanthus
ENSHCOG00000014770	trnau1apa	97	55.195	ENSAMEG00000011367	TRNAU1AP	99	57.096	Ailuropoda_melanoleuca
ENSHCOG00000014770	trnau1apa	91	82.979	ENSACIG00000004161	trnau1apa	93	82.979	Amphilophus_citrinellus
ENSHCOG00000014770	trnau1apa	99	71.704	ENSAOCG00000008056	trnau1apa	99	73.633	Amphiprion_ocellaris
ENSHCOG00000014770	trnau1apa	99	71.704	ENSAPEG00000008868	trnau1apa	99	73.633	Amphiprion_percula
ENSHCOG00000014770	trnau1apa	99	73.802	ENSATEG00000012140	trnau1apa	99	75.080	Anabas_testudineus
ENSHCOG00000014770	trnau1apa	92	55.709	ENSAPLG00000002606	TRNAU1AP	98	57.491	Anas_platyrhynchos
ENSHCOG00000014770	trnau1apa	70	37.037	ENSACAG00000004205	-	84	36.522	Anolis_carolinensis
ENSHCOG00000014770	trnau1apa	96	45.183	ENSACAG00000003995	-	98	48.161	Anolis_carolinensis
ENSHCOG00000014770	trnau1apa	97	66.429	ENSANAG00000018976	TRNAU1AP	99	57.096	Aotus_nancymaae
ENSHCOG00000014770	trnau1apa	99	71.845	ENSACLG00000018515	trnau1apa	99	73.786	Astatotilapia_calliptera
ENSHCOG00000014770	trnau1apa	93	66.667	ENSAMXG00000029240	-	97	66.667	Astyanax_mexicanus
ENSHCOG00000014770	trnau1apa	99	51.899	ENSAMXG00000013750	trnau1apa	97	51.899	Astyanax_mexicanus
ENSHCOG00000014770	trnau1apa	97	54.870	ENSBTAG00000010393	TRNAU1AP	99	56.766	Bos_taurus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCJAG00000009717	TRNAU1AP	99	57.096	Callithrix_jacchus
ENSHCOG00000014770	trnau1apa	97	55.195	ENSCAFG00000011735	TRNAU1AP	99	57.096	Canis_familiaris
ENSHCOG00000014770	trnau1apa	97	55.195	ENSCAFG00020023584	TRNAU1AP	99	57.096	Canis_lupus_dingo
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCHIG00000023215	TRNAU1AP	99	56.766	Capra_hircus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSTSYG00000003506	TRNAU1AP	99	57.096	Carlito_syrichta
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCPOG00000001925	TRNAU1AP	99	57.096	Cavia_porcellus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCCAG00000037506	TRNAU1AP	99	57.096	Cebus_capucinus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCATG00000044617	TRNAU1AP	99	56.766	Cercocebus_atys
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCLAG00000008223	TRNAU1AP	99	58.086	Chinchilla_lanigera
ENSHCOG00000014770	trnau1apa	97	54.870	ENSCSAG00000001014	TRNAU1AP	99	56.766	Chlorocebus_sabaeus
ENSHCOG00000014770	trnau1apa	94	55.517	ENSCPBG00000000121	TRNAU1AP	100	56.552	Chrysemys_picta_bellii
ENSHCOG00000014770	trnau1apa	56	47.159	ENSCSAVG00000011781	-	90	47.159	Ciona_savignyi
ENSHCOG00000014770	trnau1apa	97	47.403	ENSCANG00000041949	TRNAU1AP	100	52.632	Colobus_angolensis_palliatus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCGRG00001004713	Trnau1ap	99	57.426	Cricetulus_griseus_chok1gshd
ENSHCOG00000014770	trnau1apa	97	66.429	ENSCGRG00000014532	Trnau1ap	99	57.426	Cricetulus_griseus_crigri
ENSHCOG00000014770	trnau1apa	99	66.772	ENSCSEG00000006663	trnau1apa	99	69.811	Cynoglossus_semilaevis
ENSHCOG00000014770	trnau1apa	99	72.204	ENSCVAG00000018069	trnau1apa	99	72.524	Cyprinodon_variegatus
ENSHCOG00000014770	trnau1apa	92	47.260	ENSDARG00000101323	trnau1apa	87	47.260	Danio_rerio
ENSHCOG00000014770	trnau1apa	58	58.242	ENSDNOG00000047959	-	91	58.242	Dasypus_novemcinctus
ENSHCOG00000014770	trnau1apa	97	56.169	ENSDNOG00000033009	TRNAU1AP	99	58.086	Dasypus_novemcinctus
ENSHCOG00000014770	trnau1apa	97	52.443	ENSDORG00000006349	Trnau1ap	97	60.494	Dipodomys_ordii
ENSHCOG00000014770	trnau1apa	93	34.513	FBgn0031607	CG15440	96	34.615	Drosophila_melanogaster
ENSHCOG00000014770	trnau1apa	82	53.462	ENSETEG00000012594	TRNAU1AP	99	55.686	Echinops_telfairi
ENSHCOG00000014770	trnau1apa	51	45.161	ENSEBUG00000006349	-	56	45.161	Eptatretus_burgeri
ENSHCOG00000014770	trnau1apa	97	66.429	ENSEASG00005010062	TRNAU1AP	99	57.096	Equus_asinus_asinus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSECAG00000012980	TRNAU1AP	99	57.096	Equus_caballus
ENSHCOG00000014770	trnau1apa	99	63.871	ENSELUG00000017686	trnau1apa	99	65.484	Esox_lucius
ENSHCOG00000014770	trnau1apa	93	72.043	ENSELUG00000022790	-	95	72.043	Esox_lucius
ENSHCOG00000014770	trnau1apa	97	55.195	ENSFCAG00000013401	TRNAU1AP	99	57.096	Felis_catus
ENSHCOG00000014770	trnau1apa	94	54.639	ENSFALG00000001371	TRNAU1AP	100	56.164	Ficedula_albicollis
ENSHCOG00000014770	trnau1apa	95	66.429	ENSFDAG00000018599	TRNAU1AP	98	57.718	Fukomys_damarensis
ENSHCOG00000014770	trnau1apa	78	79.592	ENSFHEG00000018232	trnau1apa	86	77.308	Fundulus_heteroclitus
ENSHCOG00000014770	trnau1apa	93	62.116	ENSGMOG00000016508	trnau1apa	93	62.457	Gadus_morhua
ENSHCOG00000014770	trnau1apa	62	38.389	ENSGALG00000012721	C2H6orf52	86	37.295	Gallus_gallus
ENSHCOG00000014770	trnau1apa	97	54.636	ENSGALG00000001310	-	99	56.954	Gallus_gallus
ENSHCOG00000014770	trnau1apa	80	78.800	ENSGAFG00000004928	trnau1apa	94	80.632	Gambusia_affinis
ENSHCOG00000014770	trnau1apa	99	73.052	ENSGACG00000001443	trnau1apa	99	75.000	Gasterosteus_aculeatus
ENSHCOG00000014770	trnau1apa	94	55.517	ENSGAGG00000004940	TRNAU1AP	100	56.552	Gopherus_agassizii
ENSHCOG00000014770	trnau1apa	97	66.429	ENSGGOG00000003511	TRNAU1AP	99	57.096	Gorilla_gorilla
ENSHCOG00000014770	trnau1apa	99	72.168	ENSHBUG00000002510	trnau1apa	99	85.714	Haplochromis_burtoni
ENSHCOG00000014770	trnau1apa	97	66.429	ENSHGLG00000010380	TRNAU1AP	99	58.086	Heterocephalus_glaber_female
ENSHCOG00000014770	trnau1apa	97	54.545	ENSHGLG00100012699	TRNAU1AP	99	56.436	Heterocephalus_glaber_male
ENSHCOG00000014770	trnau1apa	97	66.429	ENSSTOG00000000079	TRNAU1AP	99	57.096	Ictidomys_tridecemlineatus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSJJAG00000010128	Trnau1ap	99	57.426	Jaculus_jaculus
ENSHCOG00000014770	trnau1apa	99	72.436	ENSKMAG00000001230	trnau1apa	99	72.756	Kryptolebias_marmoratus
ENSHCOG00000014770	trnau1apa	99	72.930	ENSLBEG00000011683	trnau1apa	99	74.286	Labrus_bergylta
ENSHCOG00000014770	trnau1apa	96	47.176	ENSLACG00000005541	TRNAU1AP	98	49.164	Latimeria_chalumnae
ENSHCOG00000014770	trnau1apa	95	56.610	ENSLOCG00000004041	trnau1apa	98	56.610	Lepisosteus_oculatus
ENSHCOG00000014770	trnau1apa	97	55.519	ENSLAFG00000007628	TRNAU1AP	99	57.426	Loxodonta_africana
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMFAG00000043751	TRNAU1AP	99	56.766	Macaca_fascicularis
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMMUG00000006561	TRNAU1AP	99	56.766	Macaca_mulatta
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMNEG00000044201	TRNAU1AP	99	56.766	Macaca_nemestrina
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMLEG00000015649	TRNAU1AP	99	56.766	Mandrillus_leucophaeus
ENSHCOG00000014770	trnau1apa	99	73.016	ENSMAMG00000001247	trnau1apa	99	74.286	Mastacembelus_armatus
ENSHCOG00000014770	trnau1apa	99	71.845	ENSMZEG00005017722	trnau1apa	99	73.786	Maylandia_zebra
ENSHCOG00000014770	trnau1apa	95	54.333	ENSMGAG00000002105	TRNAU1AP	100	56.949	Meleagris_gallopavo
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMICG00000008386	TRNAU1AP	99	58.086	Microcebus_murinus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMOCG00000011189	Trnau1ap	99	57.096	Microtus_ochrogaster
ENSHCOG00000014770	trnau1apa	99	63.548	ENSMMOG00000012107	trnau1apa	99	63.548	Mola_mola
ENSHCOG00000014770	trnau1apa	97	56.623	ENSMODG00000010927	TRNAU1AP	99	56.766	Monodelphis_domestica
ENSHCOG00000014770	trnau1apa	99	71.565	ENSMALG00000016778	trnau1apa	99	73.482	Monopterus_albus
ENSHCOG00000014770	trnau1apa	97	66.429	MGP_CAROLIEiJ_G0026563	Trnau1ap	99	56.766	Mus_caroli
ENSHCOG00000014770	trnau1apa	97	66.429	ENSMUSG00000028898	Trnau1ap	99	56.766	Mus_musculus
ENSHCOG00000014770	trnau1apa	97	66.429	MGP_PahariEiJ_G0028896	Trnau1ap	84	72.881	Mus_pahari
ENSHCOG00000014770	trnau1apa	97	66.429	MGP_SPRETEiJ_G0027544	Trnau1ap	99	57.756	Mus_spretus
ENSHCOG00000014770	trnau1apa	97	55.519	ENSMPUG00000015511	TRNAU1AP	99	57.426	Mustela_putorius_furo
ENSHCOG00000014770	trnau1apa	97	56.169	ENSMLUG00000012586	TRNAU1AP	99	58.086	Myotis_lucifugus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSNGAG00000015881	Trnau1ap	99	57.475	Nannospalax_galili
ENSHCOG00000014770	trnau1apa	99	61.218	ENSNBRG00000001758	trnau1apa	99	63.141	Neolamprologus_brichardi
ENSHCOG00000014770	trnau1apa	97	66.429	ENSNLEG00000009822	TRNAU1AP	99	57.096	Nomascus_leucogenys
ENSHCOG00000014770	trnau1apa	94	56.271	ENSMEUG00000006117	TRNAU1AP	100	56.419	Notamacropus_eugenii
ENSHCOG00000014770	trnau1apa	64	58.696	ENSOPRG00000007084	-	62	58.696	Ochotona_princeps
ENSHCOG00000014770	trnau1apa	97	66.429	ENSODEG00000002970	TRNAU1AP	99	58.086	Octodon_degus
ENSHCOG00000014770	trnau1apa	80	74.502	ENSONIG00000004715	trnau1apa	97	76.892	Oreochromis_niloticus
ENSHCOG00000014770	trnau1apa	99	42.484	ENSOANG00000005325	-	99	43.464	Ornithorhynchus_anatinus
ENSHCOG00000014770	trnau1apa	97	53.896	ENSOCUG00000011704	-	99	55.776	Oryctolagus_cuniculus
ENSHCOG00000014770	trnau1apa	97	47.855	ENSOCUG00000002353	-	99	47.855	Oryctolagus_cuniculus
ENSHCOG00000014770	trnau1apa	85	48.864	ENSOCUG00000006834	-	97	48.864	Oryctolagus_cuniculus
ENSHCOG00000014770	trnau1apa	99	73.312	ENSORLG00000010428	trnau1apa	99	73.955	Oryzias_latipes
ENSHCOG00000014770	trnau1apa	99	73.312	ENSORLG00020000926	trnau1ap	99	73.955	Oryzias_latipes_hni
ENSHCOG00000014770	trnau1apa	99	73.312	ENSORLG00015009858	trnau1ap	99	73.955	Oryzias_latipes_hsok
ENSHCOG00000014770	trnau1apa	99	73.633	ENSOMEG00000007873	trnau1apa	99	73.955	Oryzias_melastigma
ENSHCOG00000014770	trnau1apa	95	55.776	ENSOGAG00000002274	TRNAU1AP	98	57.718	Otolemur_garnettii
ENSHCOG00000014770	trnau1apa	97	54.870	ENSOARG00000002843	TRNAU1AP	99	56.766	Ovis_aries
ENSHCOG00000014770	trnau1apa	97	66.429	ENSPPAG00000033927	TRNAU1AP	99	57.096	Pan_paniscus
ENSHCOG00000014770	trnau1apa	97	55.195	ENSPPRG00000004416	TRNAU1AP	99	57.096	Panthera_pardus
ENSHCOG00000014770	trnau1apa	97	55.195	ENSPTIG00000016677	TRNAU1AP	99	57.096	Panthera_tigris_altaica
ENSHCOG00000014770	trnau1apa	90	50.178	ENSPTRG00000000434	-	95	51.246	Pan_troglodytes
ENSHCOG00000014770	trnau1apa	97	66.429	ENSPANG00000016019	TRNAU1AP	99	56.766	Papio_anubis
ENSHCOG00000014770	trnau1apa	93	56.122	ENSPKIG00000015511	trnau1apa	93	56.122	Paramormyrops_kingsleyae
ENSHCOG00000014770	trnau1apa	92	72.043	ENSPKIG00000022205	-	95	72.043	Paramormyrops_kingsleyae
ENSHCOG00000014770	trnau1apa	94	55.517	ENSPSIG00000006864	TRNAU1AP	100	56.552	Pelodiscus_sinensis
ENSHCOG00000014770	trnau1apa	97	62.791	ENSPMGG00000023893	trnau1apa	96	62.791	Periophthalmus_magnuspinnatus
ENSHCOG00000014770	trnau1apa	97	65.714	ENSPEMG00000007877	Trnau1ap	99	57.096	Peromyscus_maniculatus_bairdii
ENSHCOG00000014770	trnau1apa	75	48.707	ENSPMAG00000005934	trnau1apa	96	48.707	Petromyzon_marinus
ENSHCOG00000014770	trnau1apa	56	50.000	ENSPMAG00000000592	trnau1apa	95	50.000	Petromyzon_marinus
ENSHCOG00000014770	trnau1apa	99	72.524	ENSPFOG00000008100	trnau1apa	99	74.760	Poecilia_formosa
ENSHCOG00000014770	trnau1apa	96	72.093	ENSPLAG00000010236	trnau1apa	99	74.419	Poecilia_latipinna
ENSHCOG00000014770	trnau1apa	99	70.513	ENSPMEG00000016387	trnau1apa	97	72.756	Poecilia_mexicana
ENSHCOG00000014770	trnau1apa	89	75.789	ENSPREG00000019821	trnau1apa	96	75.789	Poecilia_reticulata
ENSHCOG00000014770	trnau1apa	86	49.791	ENSPPYG00000001639	-	100	50.000	Pongo_abelii
ENSHCOG00000014770	trnau1apa	96	64.748	ENSPCOG00000027712	-	99	58.086	Propithecus_coquereli
ENSHCOG00000014770	trnau1apa	95	63.504	ENSPCOG00000023470	-	100	52.896	Propithecus_coquereli
ENSHCOG00000014770	trnau1apa	97	55.195	ENSPVAG00000017214	TRNAU1AP	99	57.096	Pteropus_vampyrus
ENSHCOG00000014770	trnau1apa	99	75.000	ENSPNYG00000010130	trnau1apa	99	78.295	Pundamilia_nyererei
ENSHCOG00000014770	trnau1apa	99	50.955	ENSPNAG00000024905	trnau1apa	97	50.955	Pygocentrus_nattereri
ENSHCOG00000014770	trnau1apa	83	56.015	ENSRNOG00000055344	Trnau1ap	83	58.238	Rattus_norvegicus
ENSHCOG00000014770	trnau1apa	97	66.429	ENSRBIG00000029083	TRNAU1AP	99	57.096	Rhinopithecus_bieti
ENSHCOG00000014770	trnau1apa	97	66.429	ENSRROG00000029128	TRNAU1AP	99	57.096	Rhinopithecus_roxellana
ENSHCOG00000014770	trnau1apa	97	66.429	ENSSBOG00000021299	TRNAU1AP	99	57.096	Saimiri_boliviensis_boliviensis
ENSHCOG00000014770	trnau1apa	97	56.291	ENSSHAG00000008108	TRNAU1AP	99	56.436	Sarcophilus_harrisii
ENSHCOG00000014770	trnau1apa	99	69.010	ENSSMAG00000020851	trnau1apa	99	73.248	Scophthalmus_maximus
ENSHCOG00000014770	trnau1apa	99	71.203	ENSSDUG00000011734	trnau1apa	99	73.101	Seriola_dumerili
ENSHCOG00000014770	trnau1apa	99	66.418	ENSSLDG00000012101	trnau1apa	99	68.657	Seriola_lalandi_dorsalis
ENSHCOG00000014770	trnau1apa	95	54.817	ENSSARG00000007536	TRNAU1AP	100	56.757	Sorex_araneus
ENSHCOG00000014770	trnau1apa	94	53.952	ENSSPUG00000010400	-	96	54.983	Sphenodon_punctatus
ENSHCOG00000014770	trnau1apa	62	48.691	ENSSPUG00000010415	-	99	48.691	Sphenodon_punctatus
ENSHCOG00000014770	trnau1apa	99	71.474	ENSSPAG00000005029	trnau1apa	99	74.038	Stegastes_partitus
ENSHCOG00000014770	trnau1apa	97	55.195	ENSSSCG00000030284	TRNAU1AP	99	57.096	Sus_scrofa
ENSHCOG00000014770	trnau1apa	62	42.784	ENSTGUG00000005908	-	94	42.784	Taeniopygia_guttata
ENSHCOG00000014770	trnau1apa	95	54.576	ENSTGUG00000000735	-	100	56.419	Taeniopygia_guttata
ENSHCOG00000014770	trnau1apa	99	75.405	ENSTRUG00000003352	trnau1apa	99	75.405	Takifugu_rubripes
ENSHCOG00000014770	trnau1apa	99	71.383	ENSTNIG00000006129	trnau1apa	99	75.241	Tetraodon_nigroviridis
ENSHCOG00000014770	trnau1apa	82	50.000	ENSTBEG00000008049	-	99	51.969	Tupaia_belangeri
ENSHCOG00000014770	trnau1apa	97	56.169	ENSTTRG00000001854	TRNAU1AP	99	58.086	Tursiops_truncatus
ENSHCOG00000014770	trnau1apa	94	55.219	ENSUAMG00000008789	TRNAU1AP	100	57.192	Ursus_americanus
ENSHCOG00000014770	trnau1apa	97	56.623	ENSUMAG00000011068	TRNAU1AP	99	57.426	Ursus_maritimus
ENSHCOG00000014770	trnau1apa	97	49.515	ENSVPAG00000006778	TRNAU1AP	100	51.316	Vicugna_pacos
ENSHCOG00000014770	trnau1apa	97	54.397	ENSVVUG00000012518	TRNAU1AP	93	56.291	Vulpes_vulpes
ENSHCOG00000014770	trnau1apa	99	72.843	ENSXMAG00000017361	trnau1apa	99	75.080	Xiphophorus_maculatus