EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000014888 (Gene tree)
Gene ID: 109522681
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 3153 bases
Position: chrKV880150.1:394513-397665
Accession: 109522681
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000025043	LSM	PF01423.22	5.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000018848	-	1209	XM_019881446	ENSHCOP00000025043	238 (aa)	XP_019737005	UPI00094EAFFD

Gene Model

Click here to download ENSHCOG00000014888's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000014888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000014888	snrpb	70	94.643	ENSG00000125835	SNRPB	74	98.077	Homo_sapiens
ENSHCOG00000014888	snrpb	100	98.750	ENSAPOG00000019606	snrpb	82	98.750	Acanthochromis_polyacanthus
ENSHCOG00000014888	snrpb	69	94.611	ENSAMEG00000011353	SNRPB	75	92.308	Ailuropoda_melanoleuca
ENSHCOG00000014888	snrpb	92	99.099	ENSACIG00000014480	snrpb	99	99.099	Amphilophus_citrinellus
ENSHCOG00000014888	snrpb	100	99.167	ENSAOCG00000006876	snrpb	100	99.167	Amphiprion_ocellaris
ENSHCOG00000014888	snrpb	100	99.167	ENSAPEG00000021585	snrpb	100	99.167	Amphiprion_percula
ENSHCOG00000014888	snrpb	100	97.917	ENSATEG00000009836	snrpb	100	97.917	Anabas_testudineus
ENSHCOG00000014888	snrpb	66	95.625	ENSACAG00000002053	SNRPB	75	92.529	Anolis_carolinensis
ENSHCOG00000014888	snrpb	96	86.147	ENSANAG00000036271	-	74	84.699	Aotus_nancymaae
ENSHCOG00000014888	snrpb	70	94.643	ENSANAG00000024443	-	79	92.350	Aotus_nancymaae
ENSHCOG00000014888	snrpb	100	98.750	ENSACLG00000014707	snrpb	100	98.750	Astatotilapia_calliptera
ENSHCOG00000014888	snrpb	99	98.305	ENSAMXG00000029434	snrpb	99	98.305	Astyanax_mexicanus
ENSHCOG00000014888	snrpb	91	81.900	ENSBTAG00000001038	SNRPB	79	92.896	Bos_taurus
ENSHCOG00000014888	snrpb	70	94.643	ENSCJAG00000020971	-	79	92.350	Callithrix_jacchus
ENSHCOG00000014888	snrpb	89	85.047	ENSCJAG00000023097	-	76	85.246	Callithrix_jacchus
ENSHCOG00000014888	snrpb	61	84.247	ENSCAFG00000031109	-	76	80.874	Canis_familiaris
ENSHCOG00000014888	snrpb	70	94.643	ENSCAFG00000006693	-	79	92.350	Canis_familiaris
ENSHCOG00000014888	snrpb	70	94.643	ENSCAFG00020016981	-	76	92.350	Canis_lupus_dingo
ENSHCOG00000014888	snrpb	70	94.643	ENSCHIG00000025449	-	79	92.896	Capra_hircus
ENSHCOG00000014888	snrpb	96	74.348	ENSTSYG00000032303	-	66	72.928	Carlito_syrichta
ENSHCOG00000014888	snrpb	70	94.643	ENSTSYG00000014498	-	79	92.350	Carlito_syrichta
ENSHCOG00000014888	snrpb	69	94.611	ENSCAPG00000012669	SNRPB	79	92.308	Cavia_aperea
ENSHCOG00000014888	snrpb	70	94.643	ENSCPOG00000039408	SNRPB	79	92.350	Cavia_porcellus
ENSHCOG00000014888	snrpb	70	94.643	ENSCCAG00000026002	SNRPB	79	92.350	Cebus_capucinus
ENSHCOG00000014888	snrpb	53	83.465	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSHCOG00000014888	snrpb	70	94.643	ENSCATG00000030230	SNRPB	79	92.350	Cercocebus_atys
ENSHCOG00000014888	snrpb	70	94.643	ENSCLAG00000012442	SNRPB	77	92.350	Chinchilla_lanigera
ENSHCOG00000014888	snrpb	70	94.643	ENSCSAG00000010840	SNRPB	79	92.350	Chlorocebus_sabaeus
ENSHCOG00000014888	snrpb	70	96.429	ENSCPBG00000026801	SNRPB	80	93.443	Chrysemys_picta_bellii
ENSHCOG00000014888	snrpb	70	94.643	ENSCANG00000019461	SNRPB	79	92.350	Colobus_angolensis_palliatus
ENSHCOG00000014888	snrpb	70	94.643	ENSCGRG00001023046	Snrpb	79	92.350	Cricetulus_griseus_chok1gshd
ENSHCOG00000014888	snrpb	68	94.479	ENSCGRG00000010423	Snrpb	78	92.000	Cricetulus_griseus_crigri
ENSHCOG00000014888	snrpb	100	98.739	ENSCSEG00000020328	snrpb	100	98.739	Cynoglossus_semilaevis
ENSHCOG00000014888	snrpb	100	98.326	ENSDARG00000011125	snrpb	100	98.326	Danio_rerio
ENSHCOG00000014888	snrpb	70	88.690	ENSDNOG00000007896	-	75	86.339	Dasypus_novemcinctus
ENSHCOG00000014888	snrpb	70	94.643	ENSDNOG00000015545	-	76	92.350	Dasypus_novemcinctus
ENSHCOG00000014888	snrpb	67	94.444	ENSDORG00000029558	Snrpb	77	92.655	Dipodomys_ordii
ENSHCOG00000014888	snrpb	77	62.437	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSHCOG00000014888	snrpb	70	73.810	ENSETEG00000006830	SNRPB	80	72.678	Echinops_telfairi
ENSHCOG00000014888	snrpb	77	79.235	ENSEBUG00000007467	SNRPB	62	87.919	Eptatretus_burgeri
ENSHCOG00000014888	snrpb	70	94.048	ENSEASG00005012991	SNRPB	79	91.803	Equus_asinus_asinus
ENSHCOG00000014888	snrpb	70	94.643	ENSECAG00000011944	SNRPB	79	92.350	Equus_caballus
ENSHCOG00000014888	snrpb	70	94.643	ENSEEUG00000015568	SNRPB	64	92.350	Erinaceus_europaeus
ENSHCOG00000014888	snrpb	99	98.298	ENSELUG00000014564	snrpb	99	98.298	Esox_lucius
ENSHCOG00000014888	snrpb	70	94.643	ENSFCAG00000034090	-	79	92.350	Felis_catus
ENSHCOG00000014888	snrpb	66	96.250	ENSFALG00000004866	SNRPB	75	92.571	Ficedula_albicollis
ENSHCOG00000014888	snrpb	70	94.643	ENSFDAG00000009937	SNRPB	79	92.350	Fukomys_damarensis
ENSHCOG00000014888	snrpb	70	96.429	ENSGALG00000035421	SNRPN	76	92.896	Gallus_gallus
ENSHCOG00000014888	snrpb	94	97.345	ENSGAFG00000019558	snrpb	99	97.345	Gambusia_affinis
ENSHCOG00000014888	snrpb	100	98.739	ENSGACG00000003262	snrpb	100	98.739	Gasterosteus_aculeatus
ENSHCOG00000014888	snrpb	70	96.429	ENSGAGG00000001308	SNRPB	76	93.443	Gopherus_agassizii
ENSHCOG00000014888	snrpb	70	94.643	ENSGGOG00000016138	SNRPB	79	92.350	Gorilla_gorilla
ENSHCOG00000014888	snrpb	100	98.750	ENSHBUG00000008369	snrpb	100	98.750	Haplochromis_burtoni
ENSHCOG00000014888	snrpb	70	94.643	ENSHGLG00000016241	-	79	92.350	Heterocephalus_glaber_female
ENSHCOG00000014888	snrpb	63	86.000	ENSHGLG00000016505	-	86	81.111	Heterocephalus_glaber_female
ENSHCOG00000014888	snrpb	70	94.643	ENSHGLG00100012877	-	79	92.350	Heterocephalus_glaber_male
ENSHCOG00000014888	snrpb	63	86.000	ENSHGLG00100004178	-	86	81.111	Heterocephalus_glaber_male
ENSHCOG00000014888	snrpb	99	97.881	ENSIPUG00000024569	SNRPB	99	97.881	Ictalurus_punctatus
ENSHCOG00000014888	snrpb	89	78.404	ENSSTOG00000027821	-	62	94.853	Ictidomys_tridecemlineatus
ENSHCOG00000014888	snrpb	70	92.857	ENSSTOG00000033664	-	76	90.710	Ictidomys_tridecemlineatus
ENSHCOG00000014888	snrpb	70	94.643	ENSJJAG00000024170	Snrpb	79	92.350	Jaculus_jaculus
ENSHCOG00000014888	snrpb	95	97.807	ENSKMAG00000014494	snrpb	93	97.807	Kryptolebias_marmoratus
ENSHCOG00000014888	snrpb	100	99.580	ENSLBEG00000005678	snrpb	100	99.580	Labrus_bergylta
ENSHCOG00000014888	snrpb	99	94.958	ENSLACG00000011459	SNRPB	99	94.958	Latimeria_chalumnae
ENSHCOG00000014888	snrpb	99	98.305	ENSLOCG00000002687	snrpb	99	98.305	Lepisosteus_oculatus
ENSHCOG00000014888	snrpb	69	90.419	ENSLAFG00000017588	SNRPB	78	89.011	Loxodonta_africana
ENSHCOG00000014888	snrpb	70	94.643	ENSMFAG00000038756	SNRPB	79	92.350	Macaca_fascicularis
ENSHCOG00000014888	snrpb	70	94.643	ENSMMUG00000010050	SNRPB	79	92.350	Macaca_mulatta
ENSHCOG00000014888	snrpb	70	94.643	ENSMNEG00000027954	SNRPB	79	92.350	Macaca_nemestrina
ENSHCOG00000014888	snrpb	70	94.643	ENSMLEG00000022346	SNRPB	79	92.350	Mandrillus_leucophaeus
ENSHCOG00000014888	snrpb	99	98.745	ENSMAMG00000009294	snrpb	97	98.745	Mastacembelus_armatus
ENSHCOG00000014888	snrpb	100	98.750	ENSMZEG00005011856	snrpb	100	98.750	Maylandia_zebra
ENSHCOG00000014888	snrpb	75	83.978	ENSMICG00000015983	-	84	82.514	Microcebus_murinus
ENSHCOG00000014888	snrpb	70	94.643	ENSMICG00000016519	SNRPB	79	92.896	Microcebus_murinus
ENSHCOG00000014888	snrpb	58	78.417	ENSMOCG00000021362	-	76	75.138	Microtus_ochrogaster
ENSHCOG00000014888	snrpb	70	94.048	ENSMOCG00000002892	-	79	92.350	Microtus_ochrogaster
ENSHCOG00000014888	snrpb	95	100.000	ENSMMOG00000013226	snrpb	97	100.000	Mola_mola
ENSHCOG00000014888	snrpb	100	97.917	ENSMALG00000020839	snrpb	81	97.917	Monopterus_albus
ENSHCOG00000014888	snrpb	70	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	98.077	Mus_caroli
ENSHCOG00000014888	snrpb	70	94.643	ENSMUSG00000027404	Snrpb	74	98.077	Mus_musculus
ENSHCOG00000014888	snrpb	70	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	98.077	Mus_pahari
ENSHCOG00000014888	snrpb	70	94.643	MGP_SPRETEiJ_G0025213	Snrpb	79	92.350	Mus_spretus
ENSHCOG00000014888	snrpb	70	94.643	ENSMPUG00000009283	SNRPB	79	92.350	Mustela_putorius_furo
ENSHCOG00000014888	snrpb	70	91.071	ENSMLUG00000016951	SNRPB	76	89.071	Myotis_lucifugus
ENSHCOG00000014888	snrpb	70	94.643	ENSNGAG00000012051	Snrpb	79	92.350	Nannospalax_galili
ENSHCOG00000014888	snrpb	95	96.930	ENSNBRG00000006353	snrpb	87	96.930	Neolamprologus_brichardi
ENSHCOG00000014888	snrpb	70	94.643	ENSNLEG00000029067	SNRPB	77	92.308	Nomascus_leucogenys
ENSHCOG00000014888	snrpb	69	94.611	ENSMEUG00000015625	SNRPB	81	92.308	Notamacropus_eugenii
ENSHCOG00000014888	snrpb	70	94.643	ENSODEG00000004305	-	79	92.350	Octodon_degus
ENSHCOG00000014888	snrpb	70	89.286	ENSODEG00000016060	-	77	87.432	Octodon_degus
ENSHCOG00000014888	snrpb	100	98.750	ENSONIG00000000248	snrpb	100	98.750	Oreochromis_niloticus
ENSHCOG00000014888	snrpb	88	90.141	ENSOCUG00000028215	-	76	90.164	Oryctolagus_cuniculus
ENSHCOG00000014888	snrpb	74	88.827	ENSOCUG00000022423	-	92	86.592	Oryctolagus_cuniculus
ENSHCOG00000014888	snrpb	88	65.566	ENSOCUG00000026813	-	78	63.889	Oryctolagus_cuniculus
ENSHCOG00000014888	snrpb	89	88.372	ENSOCUG00000021456	-	76	87.978	Oryctolagus_cuniculus
ENSHCOG00000014888	snrpb	70	94.643	ENSOCUG00000014042	-	76	92.350	Oryctolagus_cuniculus
ENSHCOG00000014888	snrpb	100	97.917	ENSORLG00000021862	snrpb	100	97.917	Oryzias_latipes
ENSHCOG00000014888	snrpb	70	94.643	ENSOGAG00000016149	SNRPB	76	92.350	Otolemur_garnettii
ENSHCOG00000014888	snrpb	70	94.643	ENSOARG00000006740	SNRPB	79	92.896	Ovis_aries
ENSHCOG00000014888	snrpb	70	94.643	ENSPPAG00000036314	SNRPB	79	92.350	Pan_paniscus
ENSHCOG00000014888	snrpb	70	94.643	ENSPPRG00000003233	-	79	92.350	Panthera_pardus
ENSHCOG00000014888	snrpb	69	94.611	ENSPTIG00000007468	SNRPB	79	92.308	Panthera_tigris_altaica
ENSHCOG00000014888	snrpb	70	94.643	ENSPTRG00000013176	SNRPB	79	92.350	Pan_troglodytes
ENSHCOG00000014888	snrpb	70	94.643	ENSPANG00000020362	SNRPB	76	92.350	Papio_anubis
ENSHCOG00000014888	snrpb	99	97.034	ENSPKIG00000002865	snrpb	99	97.034	Paramormyrops_kingsleyae
ENSHCOG00000014888	snrpb	69	96.407	ENSPSIG00000014125	SNRPB	75	93.407	Pelodiscus_sinensis
ENSHCOG00000014888	snrpb	74	97.714	ENSPMGG00000016349	snrpb	75	97.714	Periophthalmus_magnuspinnatus
ENSHCOG00000014888	snrpb	70	94.643	ENSPEMG00000007948	Snrpb	79	92.350	Peromyscus_maniculatus_bairdii
ENSHCOG00000014888	snrpb	69	94.012	ENSPCIG00000004694	SNRPB	76	91.758	Phascolarctos_cinereus
ENSHCOG00000014888	snrpb	63	100.000	ENSPFOG00000011802	snrpb	63	100.000	Poecilia_formosa
ENSHCOG00000014888	snrpb	89	71.698	ENSPREG00000015515	snrpb	62	100.000	Poecilia_reticulata
ENSHCOG00000014888	snrpb	70	94.643	ENSPPYG00000010841	SNRPB	79	92.350	Pongo_abelii
ENSHCOG00000014888	snrpb	70	94.643	ENSPCOG00000013686	SNRPB	79	92.350	Propithecus_coquereli
ENSHCOG00000014888	snrpb	70	93.452	ENSPVAG00000017013	SNRPB	64	90.710	Pteropus_vampyrus
ENSHCOG00000014888	snrpb	100	98.750	ENSPNYG00000014788	snrpb	100	98.750	Pundamilia_nyererei
ENSHCOG00000014888	snrpb	99	97.881	ENSPNAG00000016126	snrpb	99	97.881	Pygocentrus_nattereri
ENSHCOG00000014888	snrpb	70	94.643	ENSRNOG00000006961	Snrpb	79	92.350	Rattus_norvegicus
ENSHCOG00000014888	snrpb	70	94.643	ENSRBIG00000040505	SNRPB	79	93.407	Rhinopithecus_bieti
ENSHCOG00000014888	snrpb	70	94.643	ENSRROG00000036094	SNRPB	79	92.350	Rhinopithecus_roxellana
ENSHCOG00000014888	snrpb	70	94.643	ENSSBOG00000027310	SNRPB	79	92.350	Saimiri_boliviensis_boliviensis
ENSHCOG00000014888	snrpb	70	95.238	ENSSHAG00000010394	SNRPB	76	92.896	Sarcophilus_harrisii
ENSHCOG00000014888	snrpb	99	96.610	ENSSFOG00015002870	snrpb	99	96.610	Scleropages_formosus
ENSHCOG00000014888	snrpb	100	99.160	ENSSMAG00000006766	snrpb	100	99.160	Scophthalmus_maximus
ENSHCOG00000014888	snrpb	100	98.750	ENSSDUG00000018539	snrpb	100	98.750	Seriola_dumerili
ENSHCOG00000014888	snrpb	100	98.750	ENSSLDG00000022391	snrpb	100	98.750	Seriola_lalandi_dorsalis
ENSHCOG00000014888	snrpb	69	79.042	ENSSARG00000003084	SNRPB	78	78.022	Sorex_araneus
ENSHCOG00000014888	snrpb	69	96.407	ENSSPUG00000015659	SNRPB	76	93.407	Sphenodon_punctatus
ENSHCOG00000014888	snrpb	100	98.750	ENSSPAG00000021992	snrpb	100	98.750	Stegastes_partitus
ENSHCOG00000014888	snrpb	95	73.362	ENSSSCG00000011966	-	77	69.399	Sus_scrofa
ENSHCOG00000014888	snrpb	70	94.643	ENSSSCG00000040857	-	79	92.896	Sus_scrofa
ENSHCOG00000014888	snrpb	71	83.529	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSHCOG00000014888	snrpb	95	99.558	ENSTRUG00000023094	snrpb	99	99.558	Takifugu_rubripes
ENSHCOG00000014888	snrpb	100	99.160	ENSTNIG00000002991	snrpb	100	99.160	Tetraodon_nigroviridis
ENSHCOG00000014888	snrpb	70	94.643	ENSUAMG00000005984	-	88	91.803	Ursus_americanus
ENSHCOG00000014888	snrpb	90	78.037	ENSUMAG00000002123	-	63	94.891	Ursus_maritimus
ENSHCOG00000014888	snrpb	93	75.330	ENSVVUG00000010086	-	78	74.725	Vulpes_vulpes
ENSHCOG00000014888	snrpb	70	94.048	ENSVVUG00000025654	-	76	91.803	Vulpes_vulpes
ENSHCOG00000014888	snrpb	63	98.000	ENSXETG00000027266	snrpb	77	92.896	Xenopus_tropicalis
ENSHCOG00000014888	snrpb	89	68.075	ENSXMAG00000028767	snrpb	58	100.000	Xiphophorus_maculatus