EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000015046 (Gene tree)
Gene ID: 109514870
Gene Symbol: ALYREF
Alias: ALY|ALY/REF|BEF|REF|THOC4
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 2942 bases
Position: chrKV879887.1:695126-698067
Accession: 109514870
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000012072	RRM_1	PF00076.22	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000026804	ALYREF-201	1352	XM_019868290	ENSHCOP00000012072	266 (aa)	XP_019723849	UPI00094EFFEE

Gene Model

Click here to download ENSHCOG00000015046's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG
hcq03040	Spliceosome	KEGG
hcq05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000015046's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000015046	ALYREF	98	50.000	ENSHCOG00000012825	-	94	49.248

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000015046	ALYREF	100	69.118	ENSG00000183684	ALYREF	97	67.790	Homo_sapiens
ENSHCOG00000015046	ALYREF	100	80.515	ENSAPOG00000018455	ALYREF	100	86.397	Acanthochromis_polyacanthus
ENSHCOG00000015046	ALYREF	74	74.112	ENSAMEG00000017463	ALYREF	74	74.227	Ailuropoda_melanoleuca
ENSHCOG00000015046	ALYREF	77	69.712	ENSACAG00000010526	ALYREF	73	70.558	Anolis_carolinensis
ENSHCOG00000015046	ALYREF	100	61.397	ENSANAG00000028229	-	78	60.300	Aotus_nancymaae
ENSHCOG00000015046	ALYREF	74	71.066	ENSANAG00000022638	-	81	69.652	Aotus_nancymaae
ENSHCOG00000015046	ALYREF	100	69.853	ENSBTAG00000008498	ALYREF	100	68.539	Bos_taurus
ENSHCOG00000015046	ALYREF	100	69.118	ENSCJAG00000039942	ALYREF	97	68.165	Callithrix_jacchus
ENSHCOG00000015046	ALYREF	100	69.853	ENSCAFG00000005877	ALYREF	100	68.539	Canis_familiaris
ENSHCOG00000015046	ALYREF	100	69.853	ENSCAFG00020009815	ALYREF	100	68.539	Canis_lupus_dingo
ENSHCOG00000015046	ALYREF	100	69.231	ENSCHIG00000017396	ALYREF	97	67.910	Capra_hircus
ENSHCOG00000015046	ALYREF	79	68.246	ENSTSYG00000002272	ALYREF	78	69.154	Carlito_syrichta
ENSHCOG00000015046	ALYREF	52	72.993	ENSCAPG00000014727	-	100	75.362	Cavia_aperea
ENSHCOG00000015046	ALYREF	100	69.485	ENSCPOG00000013710	ALYREF	100	67.416	Cavia_porcellus
ENSHCOG00000015046	ALYREF	100	60.300	ENSCCAG00000030237	-	100	58.955	Cebus_capucinus
ENSHCOG00000015046	ALYREF	100	69.853	ENSCCAG00000020578	-	97	68.165	Cebus_capucinus
ENSHCOG00000015046	ALYREF	100	69.485	ENSCATG00000033169	ALYREF	97	68.165	Cercocebus_atys
ENSHCOG00000015046	ALYREF	100	66.914	ENSCLAG00000015026	ALYREF	100	66.171	Chinchilla_lanigera
ENSHCOG00000015046	ALYREF	100	69.485	ENSCSAG00000002216	ALYREF	97	68.165	Chlorocebus_sabaeus
ENSHCOG00000015046	ALYREF	82	65.471	ENSCANG00000034056	ALYREF	96	68.844	Colobus_angolensis_palliatus
ENSHCOG00000015046	ALYREF	100	70.111	ENSCGRG00001018191	-	100	67.041	Cricetulus_griseus_chok1gshd
ENSHCOG00000015046	ALYREF	74	73.980	ENSCGRG00000015871	-	95	66.990	Cricetulus_griseus_crigri
ENSHCOG00000015046	ALYREF	72	58.673	ENSCSEG00000015438	-	98	55.897	Cynoglossus_semilaevis
ENSHCOG00000015046	ALYREF	70	75.401	ENSDNOG00000002563	ALYREF	75	75.000	Dasypus_novemcinctus
ENSHCOG00000015046	ALYREF	71	75.000	ENSDORG00000025849	-	73	74.211	Dipodomys_ordii
ENSHCOG00000015046	ALYREF	70	76.596	ENSETEG00000016596	ALYREF	100	73.936	Echinops_telfairi
ENSHCOG00000015046	ALYREF	100	69.485	ENSEASG00005005824	ALYREF	95	68.165	Equus_asinus_asinus
ENSHCOG00000015046	ALYREF	100	69.485	ENSECAG00000018754	ALYREF	95	68.165	Equus_caballus
ENSHCOG00000015046	ALYREF	67	72.043	ENSEEUG00000010164	ALYREF	100	68.539	Erinaceus_europaeus
ENSHCOG00000015046	ALYREF	100	69.853	ENSFCAG00000022549	ALYREF	98	68.539	Felis_catus
ENSHCOG00000015046	ALYREF	87	64.681	ENSFDAG00000001213	ALYREF	89	67.822	Fukomys_damarensis
ENSHCOG00000015046	ALYREF	100	70.522	ENSGALG00000007237	ALYREF	100	69.030	Gallus_gallus
ENSHCOG00000015046	ALYREF	100	82.090	ENSGACG00000013328	ALYREF	100	79.926	Gasterosteus_aculeatus
ENSHCOG00000015046	ALYREF	100	69.030	ENSGAGG00000008536	ALYREF	100	67.669	Gopherus_agassizii
ENSHCOG00000015046	ALYREF	100	69.485	ENSGGOG00000013935	ALYREF	99	67.537	Gorilla_gorilla
ENSHCOG00000015046	ALYREF	100	69.742	ENSHGLG00000008293	ALYREF	100	68.165	Heterocephalus_glaber_female
ENSHCOG00000015046	ALYREF	71	73.684	ENSHGLG00100006949	ALYREF	77	72.775	Heterocephalus_glaber_male
ENSHCOG00000015046	ALYREF	100	69.597	ENSJJAG00000004134	-	100	67.041	Jaculus_jaculus
ENSHCOG00000015046	ALYREF	100	72.556	ENSLACG00000005694	ALYREF	100	70.677	Latimeria_chalumnae
ENSHCOG00000015046	ALYREF	74	77.041	ENSLAFG00000003083	ALYREF	100	73.737	Loxodonta_africana
ENSHCOG00000015046	ALYREF	100	68.797	ENSMFAG00000001394	ALYREF	97	68.165	Macaca_fascicularis
ENSHCOG00000015046	ALYREF	100	69.485	ENSMMUG00000012884	ALYREF	97	68.165	Macaca_mulatta
ENSHCOG00000015046	ALYREF	100	69.485	ENSMNEG00000043666	ALYREF	97	68.165	Macaca_nemestrina
ENSHCOG00000015046	ALYREF	73	72.362	ENSMLEG00000043353	ALYREF	87	69.347	Mandrillus_leucophaeus
ENSHCOG00000015046	ALYREF	100	65.428	ENSMAUG00000020552	-	100	62.547	Mesocricetus_auratus
ENSHCOG00000015046	ALYREF	100	70.221	ENSMICG00000017403	ALYREF	97	67.790	Microcebus_murinus
ENSHCOG00000015046	ALYREF	100	65.789	ENSMOCG00000016792	-	100	65.299	Microtus_ochrogaster
ENSHCOG00000015046	ALYREF	99	68.266	ENSMODG00000003030	ALYREF	84	67.790	Monodelphis_domestica
ENSHCOG00000015046	ALYREF	100	78.519	ENSMALG00000019408	ALYREF	100	77.407	Monopterus_albus
ENSHCOG00000015046	ALYREF	100	69.373	MGP_CAROLIEiJ_G0017529	Alyref	100	67.416	Mus_caroli
ENSHCOG00000015046	ALYREF	100	59.176	MGP_CAROLIEiJ_G0014874	Alyref2	100	60.448	Mus_caroli
ENSHCOG00000015046	ALYREF	100	51.536	ENSMUSG00000091779	Gm21293	100	48.621	Mus_musculus
ENSHCOG00000015046	ALYREF	80	58.019	ENSMUSG00000096744	Gm4307	99	45.079	Mus_musculus
ENSHCOG00000015046	ALYREF	100	52.381	ENSMUSG00000097878	Gm8764	98	53.488	Mus_musculus
ENSHCOG00000015046	ALYREF	80	58.019	ENSMUSG00000112856	Gm4305	99	45.079	Mus_musculus
ENSHCOG00000015046	ALYREF	89	54.733	ENSMUSG00000096640	Gm4312	99	45.079	Mus_musculus
ENSHCOG00000015046	ALYREF	100	69.373	ENSMUSG00000025134	Alyref	100	67.416	Mus_musculus
ENSHCOG00000015046	ALYREF	100	63.296	ENSMUSG00000060244	Alyref2	100	62.687	Mus_musculus
ENSHCOG00000015046	ALYREF	89	54.733	ENSMUSG00000094314	Gm4301	99	45.079	Mus_musculus
ENSHCOG00000015046	ALYREF	80	58.019	ENSMUSG00000112931	Gm4303	99	45.079	Mus_musculus
ENSHCOG00000015046	ALYREF	100	52.381	ENSMUSG00000095022	Gm20765	100	48.621	Mus_musculus
ENSHCOG00000015046	ALYREF	100	51.678	ENSMUSG00000090854	Gm4340	100	47.959	Mus_musculus
ENSHCOG00000015046	ALYREF	100	51.087	ENSMUSG00000117091	AC153137.1	100	48.708	Mus_musculus
ENSHCOG00000015046	ALYREF	80	58.019	ENSMUSG00000091101	Gm4302	62	56.604	Mus_musculus
ENSHCOG00000015046	ALYREF	100	51.536	ENSMUSG00000097550	Gm21304	100	48.621	Mus_musculus
ENSHCOG00000015046	ALYREF	100	52.381	ENSMUSG00000094144	Gm21312	100	48.621	Mus_musculus
ENSHCOG00000015046	ALYREF	100	52.015	ENSMUSG00000086727	4931428L18Rik	100	50.554	Mus_musculus
ENSHCOG00000015046	ALYREF	100	52.381	ENSMUSG00000097427	Gm6763	98	53.488	Mus_musculus
ENSHCOG00000015046	ALYREF	73	75.500	MGP_PahariEiJ_G0018656	-	99	71.282	Mus_pahari
ENSHCOG00000015046	ALYREF	100	69.373	MGP_PahariEiJ_G0018655	-	100	67.416	Mus_pahari
ENSHCOG00000015046	ALYREF	80	58.491	MGP_PahariEiJ_G0027255	-	81	57.547	Mus_pahari
ENSHCOG00000015046	ALYREF	80	58.491	MGP_PahariEiJ_G0027254	-	83	57.547	Mus_pahari
ENSHCOG00000015046	ALYREF	70	51.489	MGP_SPRETEiJ_G0016590	-	100	49.138	Mus_spretus
ENSHCOG00000015046	ALYREF	100	62.547	MGP_SPRETEiJ_G0015679	Alyref2	100	61.940	Mus_spretus
ENSHCOG00000015046	ALYREF	100	69.373	MGP_SPRETEiJ_G0018373	Alyref	100	67.416	Mus_spretus
ENSHCOG00000015046	ALYREF	98	57.088	ENSMLUG00000027516	-	78	53.640	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	74	74.490	ENSMLUG00000009555	-	68	72.727	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	57.034	ENSMLUG00000002626	-	98	53.053	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	73	60.000	ENSMLUG00000024447	-	64	54.774	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	54.198	ENSMLUG00000030407	-	77	47.893	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	76	60.099	ENSMLUG00000024976	-	65	55.779	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	75	59.903	ENSMLUG00000026271	-	65	57.576	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	80	53.302	ENSMLUG00000028343	-	85	54.595	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	54.962	ENSMLUG00000025677	-	77	49.042	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	49.057	ENSMLUG00000015043	-	98	44.610	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	100	45.421	ENSMLUG00000023213	-	74	46.231	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	50.382	ENSMLUG00000022869	-	81	48.473	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	53.257	ENSMLUG00000027352	-	77	49.425	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	98	48.315	ENSMLUG00000024471	-	82	44.981	Myotis_lucifugus
ENSHCOG00000015046	ALYREF	100	69.485	ENSNLEG00000010313	ALYREF	97	68.165	Nomascus_leucogenys
ENSHCOG00000015046	ALYREF	52	73.723	ENSMEUG00000002210	ALYREF	59	76.812	Notamacropus_eugenii
ENSHCOG00000015046	ALYREF	52	75.912	ENSOPRG00000005551	-	52	76.087	Ochotona_princeps
ENSHCOG00000015046	ALYREF	100	68.727	ENSODEG00000008359	ALYREF	100	67.037	Octodon_degus
ENSHCOG00000015046	ALYREF	100	81.181	ENSORLG00000012331	ALYREF	100	84.502	Oryzias_latipes
ENSHCOG00000015046	ALYREF	71	75.000	ENSOGAG00000012409	ALYREF	76	72.487	Otolemur_garnettii
ENSHCOG00000015046	ALYREF	70	75.936	ENSOARG00000017932	ALYREF	69	72.864	Ovis_aries
ENSHCOG00000015046	ALYREF	100	69.853	ENSPPRG00000010829	ALYREF	98	68.539	Panthera_pardus
ENSHCOG00000015046	ALYREF	61	71.856	ENSPTIG00000006399	ALYREF	73	80.435	Panthera_tigris_altaica
ENSHCOG00000015046	ALYREF	100	69.485	ENSPTRG00000009774	ALYREF	97	68.165	Pan_troglodytes
ENSHCOG00000015046	ALYREF	100	69.485	ENSPANG00000019265	ALYREF	97	68.165	Papio_anubis
ENSHCOG00000015046	ALYREF	51	72.593	ENSPSIG00000017541	ALYREF	98	76.296	Pelodiscus_sinensis
ENSHCOG00000015046	ALYREF	100	69.485	ENSPPYG00000008749	ALYREF	97	68.165	Pongo_abelii
ENSHCOG00000015046	ALYREF	100	70.221	ENSPCOG00000020874	ALYREF	97	67.790	Propithecus_coquereli
ENSHCOG00000015046	ALYREF	100	62.030	ENSPVAG00000017866	ALYREF	69	73.404	Pteropus_vampyrus
ENSHCOG00000015046	ALYREF	67	71.892	ENSRNOG00000036687	Alyref	91	67.978	Rattus_norvegicus
ENSHCOG00000015046	ALYREF	71	72.632	ENSRBIG00000039651	ALYREF	74	71.728	Rhinopithecus_bieti
ENSHCOG00000015046	ALYREF	79	69.585	ENSRROG00000045364	ALYREF	75	71.875	Rhinopithecus_roxellana
ENSHCOG00000015046	ALYREF	73	73.711	ENSSHAG00000010459	ALYREF	95	73.196	Sarcophilus_harrisii
ENSHCOG00000015046	ALYREF	100	53.191	ENSSDUG00000003992	-	100	55.319	Seriola_dumerili
ENSHCOG00000015046	ALYREF	100	53.763	ENSSLDG00000005386	-	100	56.631	Seriola_lalandi_dorsalis
ENSHCOG00000015046	ALYREF	100	68.657	ENSSPUG00000004600	ALYREF	100	66.418	Sphenodon_punctatus
ENSHCOG00000015046	ALYREF	100	82.051	ENSSPAG00000011178	ALYREF	97	83.150	Stegastes_partitus
ENSHCOG00000015046	ALYREF	100	70.111	ENSSSCG00000032655	ALYREF	100	68.914	Sus_scrofa
ENSHCOG00000015046	ALYREF	51	72.593	ENSTGUG00000003513	ALYREF	100	72.857	Taeniopygia_guttata
ENSHCOG00000015046	ALYREF	100	80.370	ENSTRUG00000008828	ALYREF	100	80.000	Takifugu_rubripes
ENSHCOG00000015046	ALYREF	70	76.471	ENSTBEG00000005834	ALYREF	100	75.532	Tupaia_belangeri
ENSHCOG00000015046	ALYREF	100	69.118	ENSTTRG00000012275	ALYREF	100	67.790	Tursiops_truncatus
ENSHCOG00000015046	ALYREF	86	56.067	ENSUAMG00000016931	ALYREF	66	65.241	Ursus_americanus
ENSHCOG00000015046	ALYREF	86	55.230	ENSUMAG00000016384	ALYREF	65	61.290	Ursus_maritimus
ENSHCOG00000015046	ALYREF	100	69.517	ENSXETG00000005391	alyref	100	64.684	Xenopus_tropicalis